2021-06-03T19:00:40.3861977Z ##[section]Starting: Request a runner to run this job 2021-06-03T19:00:41.3796149Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-06-03T19:00:41.4598633Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-06-03T19:00:41.5692046Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-06-03T19:00:41.7515875Z ##[section]Finishing: Request a runner to run this job 2021-06-03T19:00:49.0313218Z Current runner version: '2.278.0' 2021-06-03T19:00:49.0342907Z ##[group]Operating System 2021-06-03T19:00:49.0344016Z Ubuntu 2021-06-03T19:00:49.0344409Z 20.04.2 2021-06-03T19:00:49.0344997Z LTS 2021-06-03T19:00:49.0345429Z ##[endgroup] 2021-06-03T19:00:49.0345908Z ##[group]Virtual Environment 2021-06-03T19:00:49.0346513Z Environment: ubuntu-20.04 2021-06-03T19:00:49.0347381Z Version: 20210531.0 2021-06-03T19:00:49.0348432Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210531.0/images/linux/Ubuntu2004-README.md 2021-06-03T19:00:49.0349695Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210531.0 2021-06-03T19:00:49.0350458Z ##[endgroup] 2021-06-03T19:00:49.0352367Z ##[group]GITHUB_TOKEN Permissions 2021-06-03T19:00:49.0353489Z Actions: write 2021-06-03T19:00:49.0354013Z Checks: write 2021-06-03T19:00:49.0354437Z Contents: write 2021-06-03T19:00:49.0354963Z Deployments: write 2021-06-03T19:00:49.0355550Z Issues: write 2021-06-03T19:00:49.0356052Z Metadata: read 2021-06-03T19:00:49.0356533Z Packages: write 2021-06-03T19:00:49.0356992Z PullRequests: write 2021-06-03T19:00:49.0357588Z RepositoryProjects: write 2021-06-03T19:00:49.0358133Z SecurityEvents: write 2021-06-03T19:00:49.0358656Z Statuses: write 2021-06-03T19:00:49.0359237Z ##[endgroup] 2021-06-03T19:00:49.0361914Z Prepare workflow directory 2021-06-03T19:00:49.1495919Z Prepare all required actions 2021-06-03T19:00:49.1509487Z Getting action download info 2021-06-03T19:00:49.5578003Z Download action repository 'actions/checkout@v2' 2021-06-03T19:00:51.5784739Z Download action repository 'r-lib/actions@master' 2021-06-03T19:00:52.2055996Z Download action repository 'adigherman/actions@master' 2021-06-03T19:00:54.7848671Z Download action repository 'msys2/setup-msys2@v2' 2021-06-03T19:00:55.0363098Z Download action repository 'actions/cache@v1' 2021-06-03T19:00:55.1957214Z Download action repository 'actions/upload-artifact@master' 2021-06-03T19:00:55.4930602Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-06-03T19:00:55.9586453Z ##[group]Run actions/checkout@v2 2021-06-03T19:00:55.9587272Z with: 2021-06-03T19:00:55.9587918Z repository: neuroconductor/neuroCombatData 2021-06-03T19:00:55.9588852Z token: *** 2021-06-03T19:00:55.9589222Z ssh-strict: true 2021-06-03T19:00:55.9589672Z persist-credentials: true 2021-06-03T19:00:55.9590115Z clean: true 2021-06-03T19:00:55.9590476Z fetch-depth: 1 2021-06-03T19:00:55.9590817Z lfs: false 2021-06-03T19:00:55.9591176Z submodules: false 2021-06-03T19:00:55.9591510Z env: 2021-06-03T19:00:55.9591912Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:00:55.9592334Z TIC_DEPLOY_KEY: 2021-06-03T19:00:55.9593066Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:00:55.9594496Z GITHUB_PAT: *** 2021-06-03T19:00:55.9595217Z COVERALLS_TOKEN: *** 2021-06-03T19:00:55.9595848Z continue-on-error: false 2021-06-03T19:00:55.9597580Z VDIFFR_RUN_TESTS: 2021-06-03T19:00:55.9598041Z ##[endgroup] 2021-06-03T19:00:56.2335080Z Syncing repository: neuroconductor/neuroCombatData 2021-06-03T19:00:56.2352166Z ##[group]Getting Git version info 2021-06-03T19:00:56.2353274Z Working directory is '/home/runner/work/neuroCombatData/neuroCombatData' 2021-06-03T19:00:56.2407424Z [command]/usr/bin/git version 2021-06-03T19:00:56.2590521Z git version 2.31.1 2021-06-03T19:00:56.2616811Z ##[endgroup] 2021-06-03T19:00:56.2625524Z Deleting the contents of '/home/runner/work/neuroCombatData/neuroCombatData' 2021-06-03T19:00:56.2634330Z ##[group]Initializing the repository 2021-06-03T19:00:56.2635808Z [command]/usr/bin/git init /home/runner/work/neuroCombatData/neuroCombatData 2021-06-03T19:00:56.2719774Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-06-03T19:00:56.2721548Z hint: is subject to change. To configure the initial branch name to use in all 2021-06-03T19:00:56.2723161Z hint: of your new repositories, which will suppress this warning, call: 2021-06-03T19:00:56.2724396Z hint: 2021-06-03T19:00:56.2725947Z hint: git config --global init.defaultBranch 2021-06-03T19:00:56.2726593Z hint: 2021-06-03T19:00:56.2727352Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-06-03T19:00:56.2729155Z hint: 'development'. The just-created branch can be renamed via this command: 2021-06-03T19:00:56.2729977Z hint: 2021-06-03T19:00:56.2730565Z hint: git branch -m 2021-06-03T19:00:56.2734209Z Initialized empty Git repository in /home/runner/work/neuroCombatData/neuroCombatData/.git/ 2021-06-03T19:00:56.2745148Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/neuroCombatData 2021-06-03T19:00:56.2794994Z ##[endgroup] 2021-06-03T19:00:56.2796036Z ##[group]Disabling automatic garbage collection 2021-06-03T19:00:56.2801836Z [command]/usr/bin/git config --local gc.auto 0 2021-06-03T19:00:56.2847616Z ##[endgroup] 2021-06-03T19:00:56.2855211Z ##[group]Setting up auth 2021-06-03T19:00:56.2864967Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-06-03T19:00:56.2922849Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-06-03T19:00:56.3328932Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-06-03T19:00:56.3370804Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-06-03T19:00:56.3619107Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-06-03T19:00:56.3685342Z ##[endgroup] 2021-06-03T19:00:56.3687801Z ##[group]Fetching the repository 2021-06-03T19:00:56.3704611Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +a68005cec61d0f6252d7c9da963f8760bd809747:refs/tags/0.99.0.s 2021-06-03T19:00:56.7642977Z remote: Enumerating objects: 27, done. 2021-06-03T19:00:56.7654534Z remote: Counting objects: 3% (1/27) 2021-06-03T19:00:56.7682465Z remote: Counting objects: 7% (2/27) 2021-06-03T19:00:56.7683401Z remote: Counting objects: 11% (3/27) 2021-06-03T19:00:56.7684037Z remote: Counting objects: 14% (4/27) 2021-06-03T19:00:56.7684644Z remote: Counting objects: 18% (5/27) 2021-06-03T19:00:56.7685240Z remote: Counting objects: 22% (6/27) 2021-06-03T19:00:56.7686147Z remote: Counting objects: 25% (7/27) 2021-06-03T19:00:56.7686715Z remote: Counting objects: 29% (8/27) 2021-06-03T19:00:56.7687269Z remote: Counting objects: 33% (9/27) 2021-06-03T19:00:56.7687839Z remote: Counting objects: 37% (10/27) 2021-06-03T19:00:56.7688409Z remote: Counting objects: 40% (11/27) 2021-06-03T19:00:56.7688964Z remote: Counting objects: 44% (12/27) 2021-06-03T19:00:56.7689563Z remote: Counting objects: 48% (13/27) 2021-06-03T19:00:56.7690474Z remote: Counting objects: 51% (14/27) 2021-06-03T19:00:56.7691027Z remote: Counting objects: 55% (15/27) 2021-06-03T19:00:56.7691594Z remote: Counting objects: 59% (16/27) 2021-06-03T19:00:56.7692157Z remote: Counting objects: 62% (17/27) 2021-06-03T19:00:56.7692709Z remote: Counting objects: 66% (18/27) 2021-06-03T19:00:56.7693272Z remote: Counting objects: 70% (19/27) 2021-06-03T19:00:56.7694177Z remote: Counting objects: 74% (20/27) 2021-06-03T19:00:56.7694837Z remote: Counting objects: 77% (21/27) 2021-06-03T19:00:56.7695407Z remote: Counting objects: 81% (22/27) 2021-06-03T19:00:56.7695964Z remote: Counting objects: 85% (23/27) 2021-06-03T19:00:56.7696504Z remote: Counting objects: 88% (24/27) 2021-06-03T19:00:56.7697061Z remote: Counting objects: 92% (25/27) 2021-06-03T19:00:56.7697864Z remote: Counting objects: 96% (26/27) 2021-06-03T19:00:56.7698417Z remote: Counting objects: 100% (27/27) 2021-06-03T19:00:56.7698998Z remote: Counting objects: 100% (27/27), done. 2021-06-03T19:00:56.7699599Z remote: Compressing objects: 4% (1/21) 2021-06-03T19:00:56.7700185Z remote: Compressing objects: 9% (2/21) 2021-06-03T19:00:56.7700962Z remote: Compressing objects: 14% (3/21) 2021-06-03T19:00:56.7701565Z remote: Compressing objects: 19% (4/21) 2021-06-03T19:00:56.7702146Z remote: Compressing objects: 23% (5/21) 2021-06-03T19:00:56.7702758Z remote: Compressing objects: 28% (6/21) 2021-06-03T19:00:56.7703361Z remote: Compressing objects: 33% (7/21) 2021-06-03T19:00:56.7704126Z remote: Compressing objects: 38% (8/21) 2021-06-03T19:00:56.7704863Z remote: Compressing objects: 42% (9/21) 2021-06-03T19:00:56.7705438Z remote: Compressing objects: 47% (10/21) 2021-06-03T19:00:56.7706009Z remote: Compressing objects: 52% (11/21) 2021-06-03T19:00:56.7706598Z remote: Compressing objects: 57% (12/21) 2021-06-03T19:00:56.7707172Z remote: Compressing objects: 61% (13/21) 2021-06-03T19:00:56.7707651Z remote: Compressing objects: 66% (14/21) 2021-06-03T19:00:56.7708259Z remote: Compressing objects: 71% (15/21) 2021-06-03T19:00:56.7708725Z remote: Compressing objects: 76% (16/21) 2021-06-03T19:00:56.7709167Z remote: Compressing objects: 80% (17/21) 2021-06-03T19:00:56.7709625Z remote: Compressing objects: 85% (18/21) 2021-06-03T19:00:56.7710409Z remote: Compressing objects: 90% (19/21) 2021-06-03T19:00:56.7711186Z remote: Compressing objects: 95% (20/21) 2021-06-03T19:00:56.7711795Z remote: Compressing objects: 100% (21/21) 2021-06-03T19:00:56.7712421Z remote: Compressing objects: 100% (21/21), done. 2021-06-03T19:00:56.7713692Z remote: Total 27 (delta 1), reused 25 (delta 1), pack-reused 0 2021-06-03T19:00:56.7714715Z From https://github.com/neuroconductor/neuroCombatData 2021-06-03T19:00:56.7715914Z * [new ref] a68005cec61d0f6252d7c9da963f8760bd809747 -> 0.99.0.s 2021-06-03T19:00:56.7716964Z ##[endgroup] 2021-06-03T19:00:56.7717645Z ##[group]Determining the checkout info 2021-06-03T19:00:56.7718228Z ##[endgroup] 2021-06-03T19:00:56.7718734Z ##[group]Checking out the ref 2021-06-03T19:00:56.7719998Z [command]/usr/bin/git checkout --progress --force refs/tags/0.99.0.s 2021-06-03T19:00:56.7720875Z Note: switching to 'refs/tags/0.99.0.s'. 2021-06-03T19:00:56.7721297Z 2021-06-03T19:00:56.7722158Z You are in 'detached HEAD' state. You can look around, make experimental 2021-06-03T19:00:56.7723083Z changes and commit them, and you can discard any commits you make in this 2021-06-03T19:00:56.7723877Z state without impacting any branches by switching back to a branch. 2021-06-03T19:00:56.7724431Z 2021-06-03T19:00:56.7724852Z If you want to create a new branch to retain commits you create, you may 2021-06-03T19:00:56.7725840Z do so (now or later) by using -c with the switch command. Example: 2021-06-03T19:00:56.7726388Z 2021-06-03T19:00:56.7726906Z git switch -c 2021-06-03T19:00:56.7727169Z 2021-06-03T19:00:56.7727486Z Or undo this operation with: 2021-06-03T19:00:56.7727733Z 2021-06-03T19:00:56.7728096Z git switch - 2021-06-03T19:00:56.7728303Z 2021-06-03T19:00:56.7728785Z Turn off this advice by setting config variable advice.detachedHead to false 2021-06-03T19:00:56.7729198Z 2021-06-03T19:00:56.7729517Z HEAD is now at a68005c Version id 200 stable 2021-06-03T19:00:56.7730103Z ##[endgroup] 2021-06-03T19:00:56.7730643Z [command]/usr/bin/git log -1 --format='%H' 2021-06-03T19:00:56.7731297Z 'a68005cec61d0f6252d7c9da963f8760bd809747' 2021-06-03T19:00:56.7834428Z ##[group]Run r-lib/actions/setup-r@master 2021-06-03T19:00:56.7834871Z with: 2021-06-03T19:00:56.7835198Z r-version: release 2021-06-03T19:00:56.7835516Z Ncpus: 1 2021-06-03T19:00:56.7835865Z crayon.enabled: NULL 2021-06-03T19:00:56.7836429Z remove-openmp-macos: true 2021-06-03T19:00:56.7836899Z http-user-agent: default 2021-06-03T19:00:56.7837292Z install-r: true 2021-06-03T19:00:56.7837755Z windows-path-include-mingw: true 2021-06-03T19:00:56.7838264Z update-rtools: false 2021-06-03T19:00:56.7838589Z env: 2021-06-03T19:00:56.7838955Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:00:56.7839352Z TIC_DEPLOY_KEY: 2021-06-03T19:00:56.7840004Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:00:56.7841275Z GITHUB_PAT: *** 2021-06-03T19:00:56.7841951Z COVERALLS_TOKEN: *** 2021-06-03T19:00:56.7842355Z continue-on-error: false 2021-06-03T19:00:56.7842755Z VDIFFR_RUN_TESTS: 2021-06-03T19:00:56.7843093Z ##[endgroup] 2021-06-03T19:00:57.7021414Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-06-03T19:00:59.4914073Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-06-03T19:00:59.4917078Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-06-03T19:00:59.4930784Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-06-03T19:00:59.5051163Z Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] 2021-06-03T19:00:59.5133109Z Get:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-06-03T19:00:59.6299778Z Get:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-06-03T19:00:59.7363541Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [1012 kB] 2021-06-03T19:00:59.7614305Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [227 kB] 2021-06-03T19:00:59.7635865Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.5 kB] 2021-06-03T19:00:59.7647554Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [241 kB] 2021-06-03T19:00:59.7691850Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [35.5 kB] 2021-06-03T19:00:59.7715750Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 c-n-f Metadata [456 B] 2021-06-03T19:00:59.7815807Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [779 kB] 2021-06-03T19:00:59.7867691Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [168 kB] 2021-06-03T19:00:59.7904615Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.6 kB] 2021-06-03T19:00:59.7907206Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [23.4 kB] 2021-06-03T19:00:59.7909961Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse Translation-en [5888 B] 2021-06-03T19:00:59.7930223Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 c-n-f Metadata [648 B] 2021-06-03T19:00:59.8745061Z Hit:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-06-03T19:00:59.9736437Z Get:20 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [74.7 kB] 2021-06-03T19:01:00.0769036Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [687 kB] 2021-06-03T19:01:00.1475128Z Get:22 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [138 kB] 2021-06-03T19:01:00.1494800Z Get:23 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7780 B] 2021-06-03T19:01:00.1496703Z Get:24 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [222 kB] 2021-06-03T19:01:00.1525435Z Get:25 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [32.7 kB] 2021-06-03T19:01:00.1539003Z Get:26 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 c-n-f Metadata [456 B] 2021-06-03T19:01:00.1546535Z Get:27 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [588 kB] 2021-06-03T19:01:00.1675131Z Get:28 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [94.6 kB] 2021-06-03T19:01:00.1681592Z Get:29 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.5 kB] 2021-06-03T19:01:00.1690233Z Get:30 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [19.9 kB] 2021-06-03T19:01:05.1230465Z Fetched 4758 kB in 1s (4829 kB/s) 2021-06-03T19:01:05.9737576Z Reading package lists... 2021-06-03T19:01:06.0009758Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-06-03T19:01:07.8210340Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-06-03T19:01:07.8906563Z Reading package lists... 2021-06-03T19:01:08.0616060Z Building dependency tree... 2021-06-03T19:01:08.0631062Z Reading state information... 2021-06-03T19:01:08.2176461Z The following additional packages will be installed: 2021-06-03T19:01:08.2177858Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-06-03T19:01:08.2178977Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-06-03T19:01:08.2181692Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-06-03T19:01:08.2183022Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-06-03T19:01:08.2184270Z libconst-fast-perl libcontextual-return-perl libcpanel-json-xs-perl 2021-06-03T19:01:08.2185497Z libcroco3 libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-06-03T19:01:08.2186734Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-06-03T19:01:08.2188385Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-06-03T19:01:08.2189648Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-06-03T19:01:08.2190706Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-06-03T19:01:08.2191916Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-06-03T19:01:08.2193305Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-06-03T19:01:08.2194582Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-06-03T19:01:08.2195758Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-06-03T19:01:08.2196925Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-06-03T19:01:08.2198029Z liblist-someutils-perl liblist-someutils-xs-perl 2021-06-03T19:01:08.2199313Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-06-03T19:01:08.2200716Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-06-03T19:01:08.2202079Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-06-03T19:01:08.2203132Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-06-03T19:01:08.2204389Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-06-03T19:01:08.2205765Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-06-03T19:01:08.2207283Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-06-03T19:01:08.2208653Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-06-03T19:01:08.2209943Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-06-03T19:01:08.2211131Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-06-03T19:01:08.2212310Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-06-03T19:01:08.2213501Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-06-03T19:01:08.2215014Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-06-03T19:01:08.2216461Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-06-03T19:01:08.2218060Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-06-03T19:01:08.2219232Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-06-03T19:01:08.2220609Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-06-03T19:01:08.2221862Z libtype-tiny-perl libtype-tiny-xs-perl libunicode-utf8-perl 2021-06-03T19:01:08.2222993Z libvariable-magic-perl libwant-perl libxml-writer-perl libyaml-libyaml-perl 2021-06-03T19:01:08.2224094Z licensecheck lintian patchutils python3-gpg python3-magic python3-unidiff 2021-06-03T19:01:08.2225169Z python3-xdg t1utils wdiff 2021-06-03T19:01:08.2226340Z Suggested packages: 2021-06-03T19:01:08.2227150Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-06-03T19:01:08.2228073Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-06-03T19:01:08.2229017Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-06-03T19:01:08.2229998Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-06-03T19:01:08.2231321Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-06-03T19:01:08.2232287Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-06-03T19:01:08.2233267Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-06-03T19:01:08.2234354Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-06-03T19:01:08.2235896Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-06-03T19:01:08.2237113Z binutils-multiarch libtext-template-perl wdiff-doc 2021-06-03T19:01:08.2820240Z The following NEW packages will be installed: 2021-06-03T19:01:08.2822413Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-06-03T19:01:08.2823708Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-06-03T19:01:08.2827787Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-06-03T19:01:08.2829665Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-06-03T19:01:08.2831273Z libclone-perl libconst-fast-perl libcontextual-return-perl 2021-06-03T19:01:08.2832614Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-06-03T19:01:08.2833830Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-06-03T19:01:08.2835189Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-06-03T19:01:08.2836414Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-06-03T19:01:08.2837551Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-06-03T19:01:08.2839154Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-06-03T19:01:08.2840386Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-06-03T19:01:08.2841714Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-06-03T19:01:08.2843179Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-06-03T19:01:08.2844458Z libipc-run-perl libjson-maybexs-perl liblinux-epoll-perl 2021-06-03T19:01:08.2845729Z liblist-compare-perl liblist-moreutils-perl liblist-someutils-perl 2021-06-03T19:01:08.2847230Z liblist-someutils-xs-perl liblog-any-adapter-screen-perl liblog-any-perl 2021-06-03T19:01:08.2848789Z libmodule-implementation-perl libmodule-runtime-perl libmoo-perl 2021-06-03T19:01:08.2850385Z libmoox-aliases-perl libmoox-struct-perl libnamespace-clean-perl 2021-06-03T19:01:08.2851707Z libnet-dns-perl libnet-dns-sec-perl libnet-domain-tld-perl libnet-ip-perl 2021-06-03T19:01:08.2852835Z libnet-libidn-perl libnumber-compare-perl libnumber-range-perl 2021-06-03T19:01:08.2855009Z libobject-id-perl libpackage-stash-perl libpackage-stash-xs-perl 2021-06-03T19:01:08.2856281Z libparams-classify-perl libparams-util-perl libparams-validate-perl 2021-06-03T19:01:08.2857916Z libpath-iterator-rule-perl libpath-tiny-perl libperl4-corelibs-perl 2021-06-03T19:01:08.2859221Z libperlio-gzip-perl libpod-constants-perl libqpdf26 libre-engine-re2-perl 2021-06-03T19:01:08.2860245Z libreadonly-perl libref-util-perl libref-util-xs-perl 2021-06-03T19:01:08.2862499Z libregexp-pattern-license-perl libregexp-pattern-perl librole-tiny-perl 2021-06-03T19:01:08.2863801Z libsereal-decoder-perl libsereal-encoder-perl libsereal-perl 2021-06-03T19:01:08.2865064Z libsort-key-perl libsort-versions-perl libstrictures-perl 2021-06-03T19:01:08.2866407Z libstring-copyright-perl libstring-escape-perl libstring-shellquote-perl 2021-06-03T19:01:08.2867745Z libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl 2021-06-03T19:01:08.2869010Z libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl 2021-06-03T19:01:08.2870144Z libterm-readkey-perl libtest-fatal-perl libtest-refcount-perl 2021-06-03T19:01:08.2871220Z libtext-glob-perl libtext-levenshtein-perl libtype-tiny-perl 2021-06-03T19:01:08.2872330Z libtype-tiny-xs-perl libunicode-utf8-perl libvariable-magic-perl 2021-06-03T19:01:08.2874871Z libwant-perl libxml-writer-perl libyaml-libyaml-perl licensecheck lintian 2021-06-03T19:01:08.2876372Z patchutils python3-gpg python3-magic python3-unidiff python3-xdg qpdf 2021-06-03T19:01:08.2877107Z t1utils wdiff 2021-06-03T19:01:08.3918551Z 0 upgraded, 126 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:01:08.3919503Z Need to get 8451 kB of archives. 2021-06-03T19:01:08.3920058Z After this operation, 31.7 MB of additional disk space will be used. 2021-06-03T19:01:08.3921896Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-06-03T19:01:08.3955088Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-06-03T19:01:08.3965145Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-06-03T19:01:08.3977265Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-06-03T19:01:08.3988558Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-06-03T19:01:08.4006344Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-06-03T19:01:08.4014145Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-06-03T19:01:08.4022829Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-06-03T19:01:08.4029829Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-06-03T19:01:08.4037618Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-06-03T19:01:08.4043536Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-06-03T19:01:08.4051107Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-06-03T19:01:08.4214491Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-06-03T19:01:08.4270901Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-06-03T19:01:08.4275107Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-06-03T19:01:08.4277357Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-06-03T19:01:08.4280097Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-06-03T19:01:08.4282126Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-06-03T19:01:08.4283403Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-06-03T19:01:08.4284771Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-06-03T19:01:08.4286286Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-06-03T19:01:08.4314105Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-06-03T19:01:08.4322891Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-06-03T19:01:08.4341647Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-06-03T19:01:08.4354677Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-06-03T19:01:08.4501110Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-06-03T19:01:08.4527023Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-06-03T19:01:08.4538990Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-06-03T19:01:08.4559211Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-06-03T19:01:08.4569711Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-06-03T19:01:08.4578110Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-06-03T19:01:08.4584484Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-06-03T19:01:08.4590497Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-06-03T19:01:08.4598986Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-06-03T19:01:08.4609948Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-06-03T19:01:08.4619209Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-06-03T19:01:08.4626250Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-06-03T19:01:08.4635418Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-06-03T19:01:08.4641089Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-06-03T19:01:08.4647363Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-06-03T19:01:08.4654013Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-06-03T19:01:08.4663091Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-06-03T19:01:08.4669334Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-06-03T19:01:08.4676452Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-06-03T19:01:08.4684397Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-06-03T19:01:08.4698805Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-06-03T19:01:08.4706921Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-06-03T19:01:08.4713455Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-06-03T19:01:08.4720620Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-06-03T19:01:08.4727534Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-06-03T19:01:08.4763201Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-06-03T19:01:08.4774372Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-06-03T19:01:08.4783739Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-06-03T19:01:08.4793019Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-06-03T19:01:08.4801640Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-06-03T19:01:08.4807100Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-06-03T19:01:08.4813467Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-06-03T19:01:08.4822391Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-06-03T19:01:08.4828009Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-06-03T19:01:08.4878785Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-06-03T19:01:08.4903310Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-06-03T19:01:08.4919380Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-06-03T19:01:08.4928623Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-06-03T19:01:08.4935659Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-06-03T19:01:08.4945752Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-06-03T19:01:08.4951830Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-06-03T19:01:08.4960877Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-06-03T19:01:08.4972890Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-06-03T19:01:08.4980158Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-06-03T19:01:08.4988285Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-06-03T19:01:08.4998137Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-06-03T19:01:08.5007556Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-06-03T19:01:08.5013454Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-06-03T19:01:08.5023047Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-06-03T19:01:08.5073842Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-06-03T19:01:08.5089078Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-06-03T19:01:08.5098443Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-06-03T19:01:08.5108522Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-06-03T19:01:08.5150917Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-06-03T19:01:08.5158209Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-06-03T19:01:08.5165979Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-06-03T19:01:08.5170964Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-06-03T19:01:08.5180871Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-06-03T19:01:08.5192262Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-06-03T19:01:08.5202768Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-06-03T19:01:08.5213052Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-06-03T19:01:08.5220586Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-06-03T19:01:08.5227430Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-06-03T19:01:08.5237152Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-06-03T19:01:08.5246957Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-06-03T19:01:08.5254384Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-06-03T19:01:08.5259613Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-06-03T19:01:08.5267379Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-06-03T19:01:08.5275913Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-06-03T19:01:08.5283228Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-06-03T19:01:08.5289764Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-06-03T19:01:08.5296485Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-06-03T19:01:08.5358551Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-06-03T19:01:08.5365697Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-06-03T19:01:08.5372714Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-06-03T19:01:08.5379811Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-06-03T19:01:08.5413019Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-06-03T19:01:08.5442407Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-06-03T19:01:08.5449934Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-06-03T19:01:08.5472730Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-06-03T19:01:08.5494475Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-06-03T19:01:08.5503645Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-06-03T19:01:08.5515040Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-06-03T19:01:08.5523247Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-06-03T19:01:08.5532748Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-06-03T19:01:08.5540134Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-06-03T19:01:08.5548144Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-06-03T19:01:08.5555018Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-06-03T19:01:08.5563849Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-06-03T19:01:08.5572555Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-06-03T19:01:08.5580403Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-06-03T19:01:08.5588208Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-06-03T19:01:08.5600226Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-06-03T19:01:08.5681757Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-06-03T19:01:08.5683686Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-06-03T19:01:08.5685598Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-06-03T19:01:08.5686909Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-06-03T19:01:08.5740656Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-06-03T19:01:08.5748247Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-06-03T19:01:08.5756177Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-06-03T19:01:08.5823765Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-06-03T19:01:09.3034405Z Fetched 8451 kB in 0s (28.9 MB/s) 2021-06-03T19:01:09.3404163Z Selecting previously unselected package dctrl-tools. 2021-06-03T19:01:09.3604257Z (Reading database ... 2021-06-03T19:01:09.3605040Z (Reading database ... 5% 2021-06-03T19:01:09.3605478Z (Reading database ... 10% 2021-06-03T19:01:09.3605881Z (Reading database ... 15% 2021-06-03T19:01:09.3606458Z (Reading database ... 20% 2021-06-03T19:01:09.3606854Z (Reading database ... 25% 2021-06-03T19:01:09.3607756Z (Reading database ... 30% 2021-06-03T19:01:09.3608573Z (Reading database ... 35% 2021-06-03T19:01:09.3608949Z (Reading database ... 40% 2021-06-03T19:01:09.3609532Z (Reading database ... 45% 2021-06-03T19:01:09.3609884Z (Reading database ... 50% 2021-06-03T19:01:09.4056184Z (Reading database ... 55% 2021-06-03T19:01:09.4525939Z (Reading database ... 60% 2021-06-03T19:01:09.4962082Z (Reading database ... 65% 2021-06-03T19:01:09.5506901Z (Reading database ... 70% 2021-06-03T19:01:09.6154025Z (Reading database ... 75% 2021-06-03T19:01:09.6868465Z (Reading database ... 80% 2021-06-03T19:01:09.7904874Z (Reading database ... 85% 2021-06-03T19:01:09.8564402Z (Reading database ... 90% 2021-06-03T19:01:09.9669819Z (Reading database ... 95% 2021-06-03T19:01:09.9670625Z (Reading database ... 100% 2021-06-03T19:01:09.9671692Z (Reading database ... 230729 files and directories currently installed.) 2021-06-03T19:01:09.9797914Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-06-03T19:01:09.9971185Z Unpacking dctrl-tools (2.24-3) ... 2021-06-03T19:01:10.2431367Z Selecting previously unselected package libfile-which-perl. 2021-06-03T19:01:10.2675318Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-06-03T19:01:10.2696745Z Unpacking libfile-which-perl (1.23-1) ... 2021-06-03T19:01:10.2979851Z Selecting previously unselected package libfile-homedir-perl. 2021-06-03T19:01:10.3223721Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb ... 2021-06-03T19:01:10.3245604Z Unpacking libfile-homedir-perl (1.004-1) ... 2021-06-03T19:01:10.3615349Z Selecting previously unselected package libio-pty-perl. 2021-06-03T19:01:10.3810376Z Preparing to unpack .../003-libio-pty-perl_1%3a1.12-1_amd64.deb ... 2021-06-03T19:01:10.3827404Z Unpacking libio-pty-perl (1:1.12-1) ... 2021-06-03T19:01:10.4215626Z Selecting previously unselected package libipc-run-perl. 2021-06-03T19:01:10.4383662Z Preparing to unpack .../004-libipc-run-perl_20180523.0-2_all.deb ... 2021-06-03T19:01:10.4410557Z Unpacking libipc-run-perl (20180523.0-2) ... 2021-06-03T19:01:10.4897453Z Selecting previously unselected package libclass-method-modifiers-perl. 2021-06-03T19:01:10.5041153Z Preparing to unpack .../005-libclass-method-modifiers-perl_2.13-1_all.deb ... 2021-06-03T19:01:10.5083164Z Unpacking libclass-method-modifiers-perl (2.13-1) ... 2021-06-03T19:01:10.5415199Z Selecting previously unselected package libb-hooks-op-check-perl. 2021-06-03T19:01:10.5606852Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-06-03T19:01:10.5622224Z Unpacking 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libmodule-runtime-perl. 2021-06-03T19:01:10.7915688Z Preparing to unpack .../010-libmodule-runtime-perl_0.016-1_all.deb ... 2021-06-03T19:01:10.7941888Z Unpacking libmodule-runtime-perl (0.016-1) ... 2021-06-03T19:01:10.8176465Z Selecting previously unselected package libimport-into-perl. 2021-06-03T19:01:10.8438977Z Preparing to unpack .../011-libimport-into-perl_1.002005-1_all.deb ... 2021-06-03T19:01:10.8451665Z Unpacking libimport-into-perl (1.002005-1) ... 2021-06-03T19:01:10.8735998Z Selecting previously unselected package librole-tiny-perl. 2021-06-03T19:01:10.8934364Z Preparing to unpack .../012-librole-tiny-perl_2.001004-1_all.deb ... 2021-06-03T19:01:10.8942726Z Unpacking librole-tiny-perl (2.001004-1) ... 2021-06-03T19:01:10.9172352Z Selecting previously unselected package libstrictures-perl. 2021-06-03T19:01:10.9386879Z Preparing to unpack .../013-libstrictures-perl_2.000006-1_all.deb ... 2021-06-03T19:01:10.9397389Z Unpacking libstrictures-perl (2.000006-1) ... 2021-06-03T19:01:10.9695500Z Selecting previously unselected package libsub-quote-perl. 2021-06-03T19:01:10.9887594Z Preparing to unpack .../014-libsub-quote-perl_2.006006-1_all.deb ... 2021-06-03T19:01:10.9900286Z Unpacking libsub-quote-perl (2.006006-1) ... 2021-06-03T19:01:11.0206266Z Selecting previously unselected package libmoo-perl. 2021-06-03T19:01:11.0414043Z Preparing to unpack .../015-libmoo-perl_2.003006-1_all.deb ... 2021-06-03T19:01:11.0427070Z Unpacking libmoo-perl (2.003006-1) ... 2021-06-03T19:01:11.0855510Z Selecting previously unselected package patchutils. 2021-06-03T19:01:11.1074004Z Preparing to unpack .../016-patchutils_0.3.4-2_amd64.deb ... 2021-06-03T19:01:11.1087148Z Unpacking patchutils (0.3.4-2) ... 2021-06-03T19:01:11.1454806Z Selecting previously unselected package wdiff. 2021-06-03T19:01:11.1648275Z Preparing to unpack .../017-wdiff_1.2.2-2build1_amd64.deb ... 2021-06-03T19:01:11.1659537Z Unpacking wdiff (1.2.2-2build1) ... 2021-06-03T19:01:11.2060954Z 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gdebi-core. 2021-06-03T19:01:11.6359038Z Preparing to unpack .../022-gdebi-core_0.9.5.7+nmu3_all.deb ... 2021-06-03T19:01:11.6367338Z Unpacking gdebi-core (0.9.5.7+nmu3) ... 2021-06-03T19:01:11.7295481Z Selecting previously unselected package libcroco3:amd64. 2021-06-03T19:01:11.7505909Z Preparing to unpack .../023-libcroco3_0.6.13-1_amd64.deb ... 2021-06-03T19:01:11.7540460Z Unpacking libcroco3:amd64 (0.6.13-1) ... 2021-06-03T19:01:11.7844202Z Selecting previously unselected package gettext. 2021-06-03T19:01:11.8079084Z Preparing to unpack .../024-gettext_0.19.8.1-10build1_amd64.deb ... 2021-06-03T19:01:11.8095602Z Unpacking gettext (0.19.8.1-10build1) ... 2021-06-03T19:01:11.9656380Z Selecting previously unselected package intltool-debian. 2021-06-03T19:01:11.9868937Z Preparing to unpack .../025-intltool-debian_0.35.0+20060710.5_all.deb ... 2021-06-03T19:01:11.9880270Z Unpacking intltool-debian (0.35.0+20060710.5) ... 2021-06-03T19:01:12.0176144Z Selecting previously unselected package libapt-pkg-perl. 2021-06-03T19:01:12.0384767Z Preparing to unpack .../026-libapt-pkg-perl_0.1.36build3_amd64.deb ... 2021-06-03T19:01:12.0397046Z Unpacking libapt-pkg-perl (0.1.36build3) ... 2021-06-03T19:01:12.0734635Z Selecting previously unselected package libarchive-zip-perl. 2021-06-03T19:01:12.0992852Z Preparing to unpack .../027-libarchive-zip-perl_1.67-2_all.deb ... 2021-06-03T19:01:12.1014390Z Unpacking libarchive-zip-perl (1.67-2) ... 2021-06-03T19:01:12.3429591Z Selecting previously unselected package libarray-intspan-perl. 2021-06-03T19:01:12.3682747Z Preparing to unpack .../028-libarray-intspan-perl_2.003-1_all.deb ... 2021-06-03T19:01:12.3706429Z Unpacking libarray-intspan-perl (2.003-1) ... 2021-06-03T19:01:12.4014991Z Selecting previously unselected package libasync-mergepoint-perl. 2021-06-03T19:01:12.4198851Z Preparing to unpack .../029-libasync-mergepoint-perl_0.04-2_all.deb ... 2021-06-03T19:01:12.4214534Z Unpacking libasync-mergepoint-perl (0.04-2) ... 2021-06-03T19:01:12.4440844Z Selecting previously unselected package libmodule-implementation-perl. 2021-06-03T19:01:12.4696717Z Preparing to unpack .../030-libmodule-implementation-perl_0.09-1_all.deb ... 2021-06-03T19:01:12.4710093Z Unpacking libmodule-implementation-perl (0.09-1) ... 2021-06-03T19:01:12.5055209Z Selecting previously unselected package libsub-exporter-progressive-perl. 2021-06-03T19:01:12.5216993Z Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-1_all.deb ... 2021-06-03T19:01:12.5231418Z Unpacking libsub-exporter-progressive-perl (0.001013-1) ... 2021-06-03T19:01:12.5454236Z Selecting previously unselected package libvariable-magic-perl. 2021-06-03T19:01:12.5685635Z Preparing to unpack .../032-libvariable-magic-perl_0.62-1build2_amd64.deb ... 2021-06-03T19:01:12.5696358Z Unpacking libvariable-magic-perl (0.62-1build2) ... 2021-06-03T19:01:12.6014972Z Selecting previously unselected package libb-hooks-endofscope-perl. 2021-06-03T19:01:12.6202812Z 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r-4.1.0 (1) ... 2021-06-03T19:01:40.7174457Z 2021-06-03T19:01:40.7175204Z 2021-06-03T19:01:40.7175770Z Reading state information... Done 2021-06-03T19:01:40.7379589Z [command]/usr/bin/sudo ln -sf /opt/R/4.1.0/bin/R /usr/local/bin/R 2021-06-03T19:01:40.7495123Z [command]/usr/bin/sudo ln -sf /opt/R/4.1.0/bin/Rscript /usr/local/bin/Rscript 2021-06-03T19:01:40.7817551Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-06-03T19:01:40.7818056Z env: 2021-06-03T19:01:40.7818586Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:01:40.7819021Z TIC_DEPLOY_KEY: 2021-06-03T19:01:40.7819752Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:01:40.7821346Z GITHUB_PAT: *** 2021-06-03T19:01:40.7822076Z COVERALLS_TOKEN: *** 2021-06-03T19:01:40.7822683Z continue-on-error: false 2021-06-03T19:01:40.7823091Z VDIFFR_RUN_TESTS: 2021-06-03T19:01:40.7823520Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:01:40.7823902Z TZ: UTC 2021-06-03T19:01:40.7824252Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:01:40.7824621Z NOT_CRAN: true 2021-06-03T19:01:40.7824942Z ##[endgroup] 2021-06-03T19:01:40.8381453Z [command]sudo apt-get install -y texinfo 2021-06-03T19:01:41.0125007Z Reading package lists... 2021-06-03T19:01:41.1650115Z Building dependency tree... 2021-06-03T19:01:41.1669625Z Reading state information... 2021-06-03T19:01:41.3772109Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-06-03T19:01:41.3782957Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:01:41.5783266Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-06-03T19:01:41.5939378Z --2021-06-03 19:01:41-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-06-03T19:01:41.6101534Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-06-03T19:01:41.6157315Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-06-03T19:01:41.6427668Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-06-03T19:01:41.6430052Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-06-03T19:01:41.6432273Z --2021-06-03 19:01:41-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-06-03T19:01:41.6931533Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-06-03T19:01:41.7550495Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-06-03T19:01:42.0250551Z HTTP request sent, awaiting response... 302 Found 2021-06-03T19:01:42.0254050Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1587/6s6tteapi4k7f57e/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=ykah6sKx0%2BVi%2F%2B3D0OBiPYoULn4MW1WK7%2Fe%2F7u1KLh0%3D&st=2021-06-03T19%3A00%3A41Z&se=2021-06-03T19%3A06%3A41Z&sp=r [following] 2021-06-03T19:01:42.0257250Z --2021-06-03 19:01:42-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1587/6s6tteapi4k7f57e/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=ykah6sKx0%2BVi%2F%2B3D0OBiPYoULn4MW1WK7%2Fe%2F7u1KLh0%3D&st=2021-06-03T19%3A00%3A41Z&se=2021-06-03T19%3A06%3A41Z&sp=r 2021-06-03T19:01:42.0789238Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-06-03T19:01:42.1402703Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-06-03T19:01:42.3605958Z HTTP request sent, awaiting response... 200 OK 2021-06-03T19:01:42.3607588Z Length: 67552518 (64M) [application/octet-stream] 2021-06-03T19:01:42.3609604Z Saving to: ‘TinyTeX.tar.gz’ 2021-06-03T19:01:42.9123106Z 2021-06-03T19:01:45.4035484Z 0K ........ ........ ........ ........ 49% 11.1M 3s 2021-06-03T19:01:47.9899987Z 32768K ........ ........ ........ ........ 99% 12.0M 0s 2021-06-03T19:01:47.9901079Z 65536K 100% 6.44M=5.6s 2021-06-03T19:01:47.9901742Z 2021-06-03T19:01:47.9903529Z 2021-06-03 19:01:47 (11.4 MB/s) - ‘TinyTeX.tar.gz’ saved [67552518/67552518] 2021-06-03T19:01:47.9903939Z 2021-06-03T19:01:50.2077854Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-06-03T19:01:50.2078877Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-06-03T19:01:50.5103025Z ##[group]Run tlmgr update --self 2021-06-03T19:01:50.5103604Z tlmgr update --self 2021-06-03T19:01:50.5104337Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-06-03T19:01:50.5105404Z tlmgr update --all 2021-06-03T19:01:50.5149427Z shell: /usr/bin/bash -e {0} 2021-06-03T19:01:50.5149759Z env: 2021-06-03T19:01:50.5150136Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:01:50.5150524Z TIC_DEPLOY_KEY: 2021-06-03T19:01:50.5151198Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:01:50.5152696Z GITHUB_PAT: *** 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[70/89, 00:05/00:05] install: placeat [4k] 2021-06-03T19:01:58.1805831Z [71/89, 00:05/00:05] install: plantuml [3k] 2021-06-03T19:01:58.2230565Z [72/89, 00:05/00:05] install: rsfs [55k] 2021-06-03T19:01:58.2713230Z [73/89, 00:05/00:05] install: selnolig [53k] 2021-06-03T19:01:58.3182201Z [74/89, 00:05/00:05] install: spelling [14k] 2021-06-03T19:01:58.3638430Z [75/89, 00:05/00:05] install: stricttex [2k] 2021-06-03T19:01:58.4058234Z [76/89, 00:05/00:05] install: texlive-common [1k] 2021-06-03T19:01:58.4493959Z [77/89, 00:05/00:05] install: texlive-en [1k] 2021-06-03T19:01:58.4938539Z [78/89, 00:05/00:05] install: texlive-msg-translations [144k] 2021-06-03T19:01:58.5503871Z [79/89, 00:05/00:05] install: thumbpdf.x86_64-linux [1k] 2021-06-03T19:01:58.5941875Z [80/89, 00:05/00:05] install: thumbpdf [19k] 2021-06-03T19:01:58.6417680Z [81/89, 00:05/00:05] install: tlshell.x86_64-linux [1k] 2021-06-03T19:01:58.6874528Z [82/89, 00:05/00:05] install: tlshell [29k] 2021-06-03T19:01:58.7350619Z [83/89, 00:05/00:05] install: typewriter [25k] 2021-06-03T19:01:58.7822791Z [84/89, 00:05/00:05] install: uninormalize [6k] 2021-06-03T19:01:58.8266034Z [85/89, 00:05/00:05] install: upquote [2k] 2021-06-03T19:01:58.8784560Z [86/89, 00:05/00:05] install: xdvi.x86_64-linux [530k] 2021-06-03T19:01:58.9646758Z [87/89, 00:05/00:05] install: xdvi [7k] 2021-06-03T19:01:59.0074668Z [88/89, 00:05/00:05] install: collection-basic [1k] 2021-06-03T19:01:59.0494176Z [89/89, 00:06/00:06] install: collection-luatex [1k] 2021-06-03T19:01:59.0707360Z running mktexlsr ... 2021-06-03T19:01:59.1517840Z done running mktexlsr. 2021-06-03T19:01:59.1791863Z running updmap-sys ... 2021-06-03T19:01:59.4401963Z done running updmap-sys. 2021-06-03T19:01:59.4403799Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-06-03T19:01:59.4406775Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/jRqSnOgjnR/7WKb4Yv2z2 ... 2021-06-03T19:01:59.8232415Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/jRqSnOgjnR/7WKb4Yv2z2. 2021-06-03T19:01:59.8234490Z OK: optex.fmt/luatex 2021-06-03T19:01:59.8235689Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-06-03T19:01:59.8237450Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-06-03T19:02:01.1371794Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-06-03T19:02:01.1373092Z tlmgr: no updates available 2021-06-03T19:02:01.2315307Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-06-03T19:02:01.2316351Z with: 2021-06-03T19:02:01.2317019Z pandoc-version: 2.7.3 2021-06-03T19:02:01.2318156Z env: 2021-06-03T19:02:01.2318657Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:02:01.2319899Z TIC_DEPLOY_KEY: 2021-06-03T19:02:01.2321153Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:02:01.2323225Z GITHUB_PAT: *** 2021-06-03T19:02:01.2324429Z COVERALLS_TOKEN: *** 2021-06-03T19:02:01.2324942Z continue-on-error: false 2021-06-03T19:02:01.2325592Z VDIFFR_RUN_TESTS: 2021-06-03T19:02:01.2326104Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:02:01.2326597Z TZ: UTC 2021-06-03T19:02:01.2327143Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:02:01.2327755Z NOT_CRAN: true 2021-06-03T19:02:01.2328282Z ##[endgroup] 2021-06-03T19:02:01.5798164Z [command]sudo apt-get install -y gdebi-core 2021-06-03T19:02:01.6434217Z Reading package lists... 2021-06-03T19:02:01.7965429Z Building dependency tree... 2021-06-03T19:02:01.7994295Z Reading state information... 2021-06-03T19:02:02.0326942Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-06-03T19:02:02.0332826Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:02.0351667Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-06-03T19:02:02.1685086Z 2021-06-03T19:02:02.1842612Z Reading package lists... 0% 2021-06-03T19:02:02.1843343Z 2021-06-03T19:02:02.1886078Z Reading package lists... 100% 2021-06-03T19:02:02.1886726Z 2021-06-03T19:02:02.1887143Z 2021-06-03T19:02:02.1887809Z Reading package lists... Done 2021-06-03T19:02:02.1888313Z 2021-06-03T19:02:02.1888968Z Building dependency tree... 0% 2021-06-03T19:02:02.1889472Z 2021-06-03T19:02:02.2118162Z Building dependency tree... 0% 2021-06-03T19:02:02.2119275Z 2021-06-03T19:02:02.2119851Z Building dependency tree... 50% 2021-06-03T19:02:02.2120176Z 2021-06-03T19:02:02.3305186Z Building dependency tree... 50% 2021-06-03T19:02:02.3305587Z 2021-06-03T19:02:02.3306348Z Building dependency tree 2021-06-03T19:02:02.3306661Z 2021-06-03T19:02:02.3307192Z Reading state information... 0% 2021-06-03T19:02:02.3307658Z 2021-06-03T19:02:02.4843329Z Reading state information... 0% 2021-06-03T19:02:02.4844002Z 2021-06-03T19:02:02.4844359Z 2021-06-03T19:02:02.4845173Z Reading state information... Done 2021-06-03T19:02:02.4846048Z 2021-06-03T19:02:02.4846601Z Reading state information... 0% 2021-06-03T19:02:02.4900836Z 2021-06-03T19:02:02.4901284Z Reading state information... 1% 2021-06-03T19:02:02.4950476Z 2021-06-03T19:02:02.4951240Z Reading state information... 3% 2021-06-03T19:02:02.4991910Z 2021-06-03T19:02:02.4992369Z Reading state information... 5% 2021-06-03T19:02:02.5038871Z 2021-06-03T19:02:02.5039420Z Reading state information... 7% 2021-06-03T19:02:02.5081333Z 2021-06-03T19:02:02.5081801Z Reading state information... 9% 2021-06-03T19:02:02.5120542Z 2021-06-03T19:02:02.5121008Z Reading state information... 11% 2021-06-03T19:02:02.5161587Z 2021-06-03T19:02:02.5162047Z Reading state information... 13% 2021-06-03T19:02:02.5197792Z 2021-06-03T19:02:02.5198322Z Reading state information... 15% 2021-06-03T19:02:02.5241297Z 2021-06-03T19:02:02.5242202Z Reading state information... 17% 2021-06-03T19:02:02.5287954Z 2021-06-03T19:02:02.5288397Z Reading state information... 19% 2021-06-03T19:02:02.5325216Z 2021-06-03T19:02:02.5325671Z Reading state information... 21% 2021-06-03T19:02:02.5362566Z 2021-06-03T19:02:02.5363104Z Reading state information... 23% 2021-06-03T19:02:02.5402273Z 2021-06-03T19:02:02.5402717Z Reading state information... 25% 2021-06-03T19:02:02.5451899Z 2021-06-03T19:02:02.5452585Z Reading state information... 27% 2021-06-03T19:02:02.5494737Z 2021-06-03T19:02:02.5495193Z Reading state information... 29% 2021-06-03T19:02:02.5535386Z 2021-06-03T19:02:02.5536134Z Reading state information... 31% 2021-06-03T19:02:02.5582001Z 2021-06-03T19:02:02.5582667Z Reading state information... 33% 2021-06-03T19:02:02.5616403Z 2021-06-03T19:02:02.5616854Z Reading state information... 35% 2021-06-03T19:02:02.5664836Z 2021-06-03T19:02:02.5665317Z Reading state information... 37% 2021-06-03T19:02:02.5717953Z 2021-06-03T19:02:02.5718399Z Reading state information... 39% 2021-06-03T19:02:02.5764631Z 2021-06-03T19:02:02.5765098Z Reading state information... 41% 2021-06-03T19:02:02.5801868Z 2021-06-03T19:02:02.5802326Z Reading state information... 43% 2021-06-03T19:02:02.5851056Z 2021-06-03T19:02:02.5851503Z Reading state information... 45% 2021-06-03T19:02:02.5913603Z 2021-06-03T19:02:02.5914277Z Reading state information... 47% 2021-06-03T19:02:02.5955758Z 2021-06-03T19:02:02.5956426Z Reading state information... 49% 2021-06-03T19:02:02.5996015Z 2021-06-03T19:02:02.5996695Z Reading state information... 51% 2021-06-03T19:02:02.6036084Z 2021-06-03T19:02:02.6036771Z Reading state information... 53% 2021-06-03T19:02:02.6085792Z 2021-06-03T19:02:02.6086494Z Reading state information... 55% 2021-06-03T19:02:02.6127589Z 2021-06-03T19:02:02.6128295Z Reading state information... 57% 2021-06-03T19:02:02.6175674Z 2021-06-03T19:02:02.6176348Z Reading state information... 59% 2021-06-03T19:02:02.6221365Z 2021-06-03T19:02:02.6222115Z Reading state information... 61% 2021-06-03T19:02:02.6278352Z 2021-06-03T19:02:02.6279595Z Reading state information... 63% 2021-06-03T19:02:02.6315358Z 2021-06-03T19:02:02.6316008Z Reading state information... 65% 2021-06-03T19:02:02.6351074Z 2021-06-03T19:02:02.6351718Z Reading state information... 67% 2021-06-03T19:02:02.6390194Z 2021-06-03T19:02:02.6390871Z Reading state information... 69% 2021-06-03T19:02:02.6438948Z 2021-06-03T19:02:02.6439624Z Reading state information... 71% 2021-06-03T19:02:02.6479334Z 2021-06-03T19:02:02.6479989Z Reading state information... 73% 2021-06-03T19:02:02.6514764Z 2021-06-03T19:02:02.6515452Z Reading state information... 75% 2021-06-03T19:02:02.6585701Z 2021-06-03T19:02:02.6586546Z Reading state information... 77% 2021-06-03T19:02:02.6621069Z 2021-06-03T19:02:02.6621717Z Reading state information... 79% 2021-06-03T19:02:02.6669052Z 2021-06-03T19:02:02.6669779Z Reading state information... 81% 2021-06-03T19:02:02.6709023Z 2021-06-03T19:02:02.6710034Z Reading state information... 83% 2021-06-03T19:02:02.6751701Z 2021-06-03T19:02:02.6753299Z Reading state information... 85% 2021-06-03T19:02:02.6791245Z 2021-06-03T19:02:02.6791714Z Reading state information... 87% 2021-06-03T19:02:02.6826724Z 2021-06-03T19:02:02.6827201Z Reading state information... 89% 2021-06-03T19:02:02.6872078Z 2021-06-03T19:02:02.6872580Z Reading state information... 91% 2021-06-03T19:02:02.6908426Z 2021-06-03T19:02:02.6908892Z Reading state information... 93% 2021-06-03T19:02:02.6948596Z 2021-06-03T19:02:02.6949161Z Reading state information... 95% 2021-06-03T19:02:02.6990865Z 2021-06-03T19:02:02.6991526Z Reading state information... 97% 2021-06-03T19:02:02.7027556Z 2021-06-03T19:02:02.7028031Z Reading state information... 99% 2021-06-03T19:02:02.9768819Z Selecting previously unselected package pandoc. 2021-06-03T19:02:03.0799611Z (Reading database ... 237841 files and directories currently installed.) 2021-06-03T19:02:03.0943051Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-06-03T19:02:03.0960602Z Unpacking pandoc (2.7.3-1) ... 2021-06-03T19:02:05.2363752Z Setting up pandoc (2.7.3-1) ... 2021-06-03T19:02:05.2403129Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:05.9654201Z 2021-06-03T19:02:05.9654940Z 2021-06-03T19:02:05.9655642Z Reading state information... Done 2021-06-03T19:02:05.9985310Z ##[group]Run git config user.name adigherman 2021-06-03T19:02:05.9985969Z git config user.name adigherman 2021-06-03T19:02:05.9986482Z git config user.email adig@jhu.edu 2021-06-03T19:02:06.0058566Z shell: /usr/bin/bash -e {0} 2021-06-03T19:02:06.0058934Z env: 2021-06-03T19:02:06.0059351Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:02:06.0060387Z TIC_DEPLOY_KEY: 2021-06-03T19:02:06.0061242Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:02:06.0062739Z GITHUB_PAT: *** 2021-06-03T19:02:06.0063551Z COVERALLS_TOKEN: *** 2021-06-03T19:02:06.0064041Z continue-on-error: false 2021-06-03T19:02:06.0064488Z VDIFFR_RUN_TESTS: 2021-06-03T19:02:06.0064923Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:02:06.0065339Z TZ: UTC 2021-06-03T19:02:06.0065688Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:02:06.0066076Z NOT_CRAN: true 2021-06-03T19:02:06.0066434Z ##[endgroup] 2021-06-03T19:02:06.0374294Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-06-03T19:02:06.0374920Z env: 2021-06-03T19:02:06.0375365Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:02:06.0375800Z TIC_DEPLOY_KEY: 2021-06-03T19:02:06.0376550Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:02:06.0378315Z GITHUB_PAT: *** 2021-06-03T19:02:06.0379080Z COVERALLS_TOKEN: *** 2021-06-03T19:02:06.0379563Z continue-on-error: false 2021-06-03T19:02:06.0380030Z VDIFFR_RUN_TESTS: 2021-06-03T19:02:06.0380487Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:02:06.0381068Z TZ: UTC 2021-06-03T19:02:06.0381441Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:02:06.0381834Z NOT_CRAN: true 2021-06-03T19:02:06.0382193Z ##[endgroup] 2021-06-03T19:02:06.2458328Z Reading package lists... 2021-06-03T19:02:06.4035047Z Building dependency tree... 2021-06-03T19:02:06.4057281Z Reading state information... 2021-06-03T19:02:06.5391814Z The following additional packages will be installed: 2021-06-03T19:02:06.5394504Z cmake-data libjsoncpp1 librhash0 2021-06-03T19:02:06.5400720Z Suggested packages: 2021-06-03T19:02:06.5401467Z cmake-doc ninja-build 2021-06-03T19:02:06.5878128Z The following NEW packages will be installed: 2021-06-03T19:02:06.5882989Z cmake cmake-data libjsoncpp1 librhash0 2021-06-03T19:02:06.6150716Z 0 upgraded, 4 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:06.6152821Z Need to get 5470 kB of archives. 2021-06-03T19:02:06.6153799Z After this operation, 28.3 MB of additional disk space will be used. 2021-06-03T19:02:06.6155935Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-06-03T19:02:06.6411133Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-06-03T19:02:06.6423106Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-06-03T19:02:06.6436235Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-06-03T19:02:07.0988077Z Fetched 5470 kB in 0s (63.9 MB/s) 2021-06-03T19:02:07.1410249Z Selecting previously unselected package cmake-data. 2021-06-03T19:02:07.1478833Z (Reading database ... 2021-06-03T19:02:07.1479284Z (Reading database ... 5% 2021-06-03T19:02:07.1479698Z (Reading database ... 10% 2021-06-03T19:02:07.1480294Z (Reading database ... 15% 2021-06-03T19:02:07.1480706Z (Reading database ... 20% 2021-06-03T19:02:07.1481130Z (Reading database ... 25% 2021-06-03T19:02:07.1481555Z (Reading database ... 30% 2021-06-03T19:02:07.1481964Z (Reading database ... 35% 2021-06-03T19:02:07.1482588Z (Reading database ... 40% 2021-06-03T19:02:07.1482997Z (Reading database ... 45% 2021-06-03T19:02:07.1483424Z (Reading database ... 50% 2021-06-03T19:02:07.1575201Z (Reading database ... 55% 2021-06-03T19:02:07.1622127Z (Reading database ... 60% 2021-06-03T19:02:07.1649294Z (Reading database ... 65% 2021-06-03T19:02:07.1713230Z (Reading database ... 70% 2021-06-03T19:02:07.1739034Z (Reading database ... 75% 2021-06-03T19:02:07.1760390Z (Reading database ... 80% 2021-06-03T19:02:07.2094494Z (Reading database ... 85% 2021-06-03T19:02:07.2154595Z (Reading database ... 90% 2021-06-03T19:02:07.2508625Z (Reading database ... 95% 2021-06-03T19:02:07.2509110Z (Reading database ... 100% 2021-06-03T19:02:07.2509771Z (Reading database ... 237848 files and directories currently installed.) 2021-06-03T19:02:07.2633285Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-06-03T19:02:07.3092597Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-06-03T19:02:07.9217629Z Selecting previously unselected package libjsoncpp1:amd64. 2021-06-03T19:02:07.9528700Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-06-03T19:02:07.9560561Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-06-03T19:02:07.9899962Z Selecting previously unselected package librhash0:amd64. 2021-06-03T19:02:08.0152389Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-06-03T19:02:08.0163196Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-06-03T19:02:08.0575958Z Selecting previously unselected package cmake. 2021-06-03T19:02:08.0848693Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-06-03T19:02:08.0862412Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-06-03T19:02:08.5067322Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-06-03T19:02:08.5102887Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-06-03T19:02:08.5586992Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-06-03T19:02:08.5621798Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-06-03T19:02:08.5664338Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:09.6105745Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:11.4023544Z Reading package lists... 2021-06-03T19:02:11.5357469Z Building dependency tree... 2021-06-03T19:02:11.5374754Z Reading state information... 2021-06-03T19:02:11.6737686Z Suggested packages: 2021-06-03T19:02:11.6739203Z libssh-doc 2021-06-03T19:02:11.7207371Z The following NEW packages will be installed: 2021-06-03T19:02:11.7209018Z libssh-dev 2021-06-03T19:02:11.7555185Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:11.7556173Z Need to get 219 kB of archives. 2021-06-03T19:02:11.7556837Z After this operation, 1127 kB of additional disk space will be used. 2021-06-03T19:02:11.7559611Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-06-03T19:02:12.1784149Z Fetched 219 kB in 0s (6126 kB/s) 2021-06-03T19:02:12.2070321Z Selecting previously unselected package libssh-dev:amd64. 2021-06-03T19:02:12.2143317Z (Reading database ... 2021-06-03T19:02:12.2144014Z (Reading database ... 5% 2021-06-03T19:02:12.2144796Z (Reading database ... 10% 2021-06-03T19:02:12.2145378Z (Reading database ... 15% 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and directories currently installed.) 2021-06-03T19:02:12.3244993Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-06-03T19:02:12.3259344Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-06-03T19:02:12.4111130Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-06-03T19:02:14.1872469Z Reading package lists... 2021-06-03T19:02:14.3416699Z Building dependency tree... 2021-06-03T19:02:14.3436411Z Reading state information... 2021-06-03T19:02:14.5381213Z The following NEW packages will be installed: 2021-06-03T19:02:14.5387820Z jags 2021-06-03T19:02:14.5570471Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:14.5571274Z Need to get 1562 kB of archives. 2021-06-03T19:02:14.5571920Z After this operation, 3615 kB of additional disk space will be used. 2021-06-03T19:02:14.5574697Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-06-03T19:02:14.9505627Z Fetched 1562 kB in 0s (51.0 MB/s) 2021-06-03T19:02:14.9790531Z Selecting previously unselected package jags. 2021-06-03T19:02:14.9859081Z (Reading database ... 2021-06-03T19:02:14.9859944Z (Reading database ... 5% 2021-06-03T19:02:14.9860794Z (Reading database ... 10% 2021-06-03T19:02:14.9861681Z (Reading database ... 15% 2021-06-03T19:02:14.9862316Z (Reading database ... 20% 2021-06-03T19:02:14.9862929Z (Reading database ... 25% 2021-06-03T19:02:14.9863563Z (Reading database ... 30% 2021-06-03T19:02:14.9864256Z (Reading database ... 35% 2021-06-03T19:02:14.9864883Z (Reading database ... 40% 2021-06-03T19:02:14.9865526Z (Reading database ... 45% 2021-06-03T19:02:14.9866166Z (Reading database ... 50% 2021-06-03T19:02:14.9943377Z (Reading database ... 55% 2021-06-03T19:02:14.9983297Z (Reading database ... 60% 2021-06-03T19:02:15.0015609Z (Reading database ... 65% 2021-06-03T19:02:15.0071066Z (Reading database ... 70% 2021-06-03T19:02:15.0097458Z (Reading database ... 75% 2021-06-03T19:02:15.0118908Z (Reading database ... 80% 2021-06-03T19:02:15.0458432Z (Reading database ... 85% 2021-06-03T19:02:15.0511049Z (Reading database ... 90% 2021-06-03T19:02:15.0810986Z (Reading database ... 95% 2021-06-03T19:02:15.0812809Z (Reading database ... 100% 2021-06-03T19:02:15.0815295Z (Reading database ... 240651 files and directories currently installed.) 2021-06-03T19:02:15.0922930Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-06-03T19:02:15.0943765Z Unpacking jags (4.3.0-3build1) ... 2021-06-03T19:02:15.2450972Z Setting up jags (4.3.0-3build1) ... 2021-06-03T19:02:15.2563901Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:15.9434674Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:17.7809912Z Reading package lists... 2021-06-03T19:02:17.9224808Z Building dependency tree... 2021-06-03T19:02:17.9242730Z Reading state information... 2021-06-03T19:02:18.0764215Z The following additional packages will be installed: 2021-06-03T19:02:18.0766145Z libnode64 libuv1-dev 2021-06-03T19:02:18.1285308Z The following NEW packages will be installed: 2021-06-03T19:02:18.1288965Z libnode-dev libnode64 libuv1-dev 2021-06-03T19:02:18.1492476Z 0 upgraded, 3 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:18.1494428Z Need to get 6239 kB of archives. 2021-06-03T19:02:18.1495340Z After this operation, 24.9 MB of additional disk space will be used. 2021-06-03T19:02:18.1497186Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-06-03T19:02:18.1543638Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-06-03T19:02:18.2077202Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-06-03T19:02:18.5903870Z Fetched 6239 kB in 0s (82.6 MB/s) 2021-06-03T19:02:18.6189078Z Selecting previously unselected package libuv1-dev:amd64. 2021-06-03T19:02:18.6258115Z (Reading database ... 2021-06-03T19:02:18.6259209Z (Reading database ... 5% 2021-06-03T19:02:18.6259842Z (Reading database ... 10% 2021-06-03T19:02:18.6260392Z (Reading database ... 15% 2021-06-03T19:02:18.6261002Z (Reading database ... 20% 2021-06-03T19:02:18.6261570Z (Reading database ... 25% 2021-06-03T19:02:18.6262121Z (Reading database ... 30% 2021-06-03T19:02:18.6262656Z (Reading database ... 35% 2021-06-03T19:02:18.6263211Z (Reading database ... 40% 2021-06-03T19:02:18.6263758Z (Reading database ... 45% 2021-06-03T19:02:18.6264914Z (Reading database ... 50% 2021-06-03T19:02:18.6346500Z (Reading database ... 55% 2021-06-03T19:02:18.6407809Z (Reading database ... 60% 2021-06-03T19:02:18.6440824Z (Reading database ... 65% 2021-06-03T19:02:18.6502032Z (Reading database ... 70% 2021-06-03T19:02:18.6528358Z (Reading database ... 75% 2021-06-03T19:02:18.6552315Z (Reading database ... 80% 2021-06-03T19:02:18.6901347Z (Reading database ... 85% 2021-06-03T19:02:18.6955504Z (Reading database ... 90% 2021-06-03T19:02:18.7235994Z (Reading database ... 95% 2021-06-03T19:02:18.7236766Z (Reading database ... 100% 2021-06-03T19:02:18.7237569Z (Reading database ... 240791 files and directories currently installed.) 2021-06-03T19:02:18.7339700Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-06-03T19:02:18.7353226Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-06-03T19:02:18.7680474Z Selecting previously unselected package libnode64:amd64. 2021-06-03T19:02:18.7957715Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-06-03T19:02:18.7979322Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-06-03T19:02:19.3937092Z Selecting previously unselected package libnode-dev:amd64. 2021-06-03T19:02:19.4116500Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-06-03T19:02:19.4126953Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-06-03T19:02:19.5003208Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-06-03T19:02:19.5039694Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-06-03T19:02:19.5074209Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-06-03T19:02:19.5111239Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:21.3344675Z Reading package lists... 2021-06-03T19:02:21.5164101Z Building dependency tree... 2021-06-03T19:02:21.5182391Z Reading state information... 2021-06-03T19:02:21.6775211Z The following additional packages will be installed: 2021-06-03T19:02:21.6785910Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-06-03T19:02:21.6789168Z Suggested packages: 2021-06-03T19:02:21.6789925Z libfftw3-doc 2021-06-03T19:02:21.7324521Z The following NEW packages will be installed: 2021-06-03T19:02:21.7328634Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-06-03T19:02:21.7543842Z 0 upgraded, 5 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:21.7544780Z Need to get 3986 kB of archives. 2021-06-03T19:02:21.7545514Z After this operation, 22.4 MB of additional disk space will be used. 2021-06-03T19:02:21.7547231Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-06-03T19:02:21.7722139Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-06-03T19:02:21.7877923Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-06-03T19:02:21.8066177Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-06-03T19:02:21.8075293Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-06-03T19:02:22.2571221Z Fetched 3986 kB in 0s (33.2 MB/s) 2021-06-03T19:02:22.2903959Z Selecting previously unselected package libfftw3-long3:amd64. 2021-06-03T19:02:22.2975971Z (Reading database ... 2021-06-03T19:02:22.2976804Z (Reading database ... 5% 2021-06-03T19:02:22.2977606Z (Reading database ... 10% 2021-06-03T19:02:22.2978150Z (Reading database ... 15% 2021-06-03T19:02:22.2978775Z (Reading database ... 20% 2021-06-03T19:02:22.2979395Z (Reading database ... 25% 2021-06-03T19:02:22.2979809Z (Reading database ... 30% 2021-06-03T19:02:22.2980232Z (Reading database ... 35% 2021-06-03T19:02:22.2980659Z (Reading database ... 40% 2021-06-03T19:02:22.2981067Z (Reading database ... 45% 2021-06-03T19:02:22.2981490Z (Reading database ... 50% 2021-06-03T19:02:22.3067862Z (Reading database ... 55% 2021-06-03T19:02:22.3111101Z (Reading database ... 60% 2021-06-03T19:02:22.3142789Z (Reading database ... 65% 2021-06-03T19:02:22.3195725Z (Reading database ... 70% 2021-06-03T19:02:22.3221627Z (Reading database ... 75% 2021-06-03T19:02:22.3246330Z (Reading database ... 80% 2021-06-03T19:02:22.3583366Z (Reading database ... 85% 2021-06-03T19:02:23.1004905Z (Reading database ... 90% 2021-06-03T19:02:23.1006805Z (Reading database ... 95% 2021-06-03T19:02:23.1007548Z (Reading database ... 100% 2021-06-03T19:02:23.1008650Z (Reading database ... 240927 files and directories currently installed.) 2021-06-03T19:02:23.1010835Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-06-03T19:02:23.1012106Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1013305Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-06-03T19:02:23.1014902Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-06-03T19:02:23.1016051Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1017267Z Selecting previously unselected package libfftw3-single3:amd64. 2021-06-03T19:02:23.1018711Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-06-03T19:02:23.1020001Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1026481Z Selecting previously unselected package libfftw3-bin. 2021-06-03T19:02:23.1028272Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-06-03T19:02:23.1029369Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1030364Z Selecting previously unselected package libfftw3-dev:amd64. 2021-06-03T19:02:23.1032125Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-06-03T19:02:23.1033439Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1034432Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1035409Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1036673Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1037994Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1039293Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-06-03T19:02:23.1040020Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:23.7748137Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:25.6537245Z Reading package lists... 2021-06-03T19:02:25.8009960Z Building dependency tree... 2021-06-03T19:02:25.8027694Z Reading state information... 2021-06-03T19:02:25.9556475Z The following additional packages will be installed: 2021-06-03T19:02:25.9560061Z libdcmtk14 2021-06-03T19:02:26.0105687Z The following NEW packages will be installed: 2021-06-03T19:02:26.0112885Z dcmtk libdcmtk14 2021-06-03T19:02:26.0444121Z 0 upgraded, 2 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:26.0445070Z Need to get 5546 kB of archives. 2021-06-03T19:02:26.0445786Z After this operation, 26.5 MB of additional disk space will be used. 2021-06-03T19:02:26.0447727Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-06-03T19:02:26.0962691Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-06-03T19:02:26.5068175Z Fetched 5546 kB in 0s (63.6 MB/s) 2021-06-03T19:02:26.5374971Z Selecting previously unselected package libdcmtk14. 2021-06-03T19:02:26.5435173Z (Reading database ... 2021-06-03T19:02:26.5436128Z (Reading database ... 5% 2021-06-03T19:02:26.5436948Z (Reading database ... 10% 2021-06-03T19:02:26.5437568Z (Reading database ... 15% 2021-06-03T19:02:26.5438156Z (Reading database ... 20% 2021-06-03T19:02:26.5438827Z (Reading database ... 25% 2021-06-03T19:02:26.5439468Z (Reading database ... 30% 2021-06-03T19:02:26.5440048Z (Reading database ... 35% 2021-06-03T19:02:26.5440635Z (Reading database ... 40% 2021-06-03T19:02:26.5441234Z (Reading database ... 45% 2021-06-03T19:02:26.5441988Z (Reading database ... 50% 2021-06-03T19:02:26.5522944Z (Reading database ... 55% 2021-06-03T19:02:26.5564243Z (Reading database ... 60% 2021-06-03T19:02:26.5592408Z (Reading database ... 65% 2021-06-03T19:02:26.5638710Z (Reading database ... 70% 2021-06-03T19:02:26.5664066Z (Reading database ... 75% 2021-06-03T19:02:26.5686802Z (Reading database ... 80% 2021-06-03T19:02:26.5994381Z (Reading database ... 85% 2021-06-03T19:02:26.6044898Z (Reading database ... 90% 2021-06-03T19:02:26.6356947Z (Reading database ... 95% 2021-06-03T19:02:26.6358594Z (Reading database ... 100% 2021-06-03T19:02:26.6360291Z (Reading database ... 241018 files and directories currently installed.) 2021-06-03T19:02:26.6529885Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-06-03T19:02:26.6556420Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-06-03T19:02:27.2015749Z Selecting previously unselected package dcmtk. 2021-06-03T19:02:27.2251307Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-06-03T19:02:27.2311178Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-06-03T19:02:27.3775474Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-06-03T19:02:27.3817186Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-06-03T19:02:27.3986082Z Adding `dcmtk' group to system ... 2021-06-03T19:02:27.5129670Z Adding `dcmtk' user to system ... 2021-06-03T19:02:27.7534433Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-06-03T19:02:28.0152052Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:29.5432786Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:31.3782729Z Reading package lists... 2021-06-03T19:02:31.5255038Z Building dependency tree... 2021-06-03T19:02:31.5272332Z Reading state information... 2021-06-03T19:02:31.7562523Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-06-03T19:02:31.7563259Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:31.8182906Z Reading package lists... 2021-06-03T19:02:31.9509718Z Building dependency tree... 2021-06-03T19:02:31.9527435Z Reading state information... 2021-06-03T19:02:32.2143823Z libpng-dev is already the newest version (1.6.37-2). 2021-06-03T19:02:32.2147298Z libpng-dev set to manually installed. 2021-06-03T19:02:32.2148652Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:32.2867866Z Reading package lists... 2021-06-03T19:02:32.4435437Z Building dependency tree... 2021-06-03T19:02:32.4453487Z Reading state information... 2021-06-03T19:02:32.6052072Z The following additional packages will be installed: 2021-06-03T19:02:32.6054913Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-06-03T19:02:32.6058826Z Suggested packages: 2021-06-03T19:02:32.6060143Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-06-03T19:02:32.6061706Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-06-03T19:02:32.6062964Z fonts-arphic-uming fonts-nanum 2021-06-03T19:02:32.6544129Z The following NEW packages will be installed: 2021-06-03T19:02:32.6546167Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-06-03T19:02:32.6547521Z libpoppler97 poppler-data 2021-06-03T19:02:32.6749870Z 0 upgraded, 6 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:32.6750714Z Need to get 2582 kB of archives. 2021-06-03T19:02:32.6751652Z After this operation, 16.7 MB of additional disk space will be used. 2021-06-03T19:02:32.6754133Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-06-03T19:02:32.7023273Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-06-03T19:02:32.7053152Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-06-03T19:02:32.7237122Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-06-03T19:02:32.7248130Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-06-03T19:02:32.7250082Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-06-03T19:02:33.1343068Z Fetched 2582 kB in 0s (39.0 MB/s) 2021-06-03T19:02:33.1654430Z Selecting previously unselected package poppler-data. 2021-06-03T19:02:33.1739777Z (Reading database ... 2021-06-03T19:02:33.1740618Z (Reading database ... 5% 2021-06-03T19:02:33.1741328Z (Reading database ... 10% 2021-06-03T19:02:33.1741995Z (Reading database ... 15% 2021-06-03T19:02:33.1742675Z (Reading database ... 20% 2021-06-03T19:02:33.1743532Z (Reading database ... 25% 2021-06-03T19:02:33.1744272Z (Reading database ... 30% 2021-06-03T19:02:33.1744949Z (Reading database ... 35% 2021-06-03T19:02:33.1745624Z (Reading database ... 40% 2021-06-03T19:02:33.1746292Z (Reading database ... 45% 2021-06-03T19:02:33.1746966Z (Reading database ... 50% 2021-06-03T19:02:33.1825773Z (Reading database ... 55% 2021-06-03T19:02:33.1868051Z (Reading database ... 60% 2021-06-03T19:02:33.1896644Z (Reading database ... 65% 2021-06-03T19:02:33.1949822Z (Reading database ... 70% 2021-06-03T19:02:33.1975424Z (Reading database ... 75% 2021-06-03T19:02:33.2001364Z (Reading database ... 80% 2021-06-03T19:02:33.2357557Z (Reading database ... 85% 2021-06-03T19:02:33.2418265Z (Reading database ... 90% 2021-06-03T19:02:33.2725366Z (Reading database ... 95% 2021-06-03T19:02:33.2727108Z (Reading database ... 100% 2021-06-03T19:02:33.2729356Z (Reading database ... 241253 files and directories currently installed.) 2021-06-03T19:02:33.2849383Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-06-03T19:02:33.2863812Z Unpacking poppler-data (0.4.9-2) ... 2021-06-03T19:02:33.5777373Z Selecting previously unselected package libopenjp2-7:amd64. 2021-06-03T19:02:33.6011001Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-06-03T19:02:33.6035147Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-06-03T19:02:33.6455382Z Selecting previously unselected package libpoppler97:amd64. 2021-06-03T19:02:33.6637882Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-06-03T19:02:33.6655782Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.7776084Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-06-03T19:02:33.7976701Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-06-03T19:02:33.7988705Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.8295687Z Selecting previously unselected package libpoppler-dev:amd64. 2021-06-03T19:02:33.8517207Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-06-03T19:02:33.8530860Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.8815534Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-06-03T19:02:33.9002743Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-06-03T19:02:33.9018861Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.9574834Z Setting up poppler-data (0.4.9-2) ... 2021-06-03T19:02:33.9709787Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-06-03T19:02:33.9750632Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.9787050Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.9817275Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.9859121Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-06-03T19:02:33.9905429Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-06-03T19:02:34.0864012Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:35.8942096Z Reading package lists... 2021-06-03T19:02:36.0351105Z Building dependency tree... 2021-06-03T19:02:36.0371368Z Reading state information... 2021-06-03T19:02:36.1928277Z The following additional packages will be installed: 2021-06-03T19:02:36.1933255Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-06-03T19:02:36.1938066Z Suggested packages: 2021-06-03T19:02:36.1938992Z libhdf5-doc 2021-06-03T19:02:36.2474038Z The following NEW packages will be installed: 2021-06-03T19:02:36.2476355Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-06-03T19:02:36.2478191Z libsz2 2021-06-03T19:02:36.2711619Z 0 upgraded, 7 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:36.2712765Z Need to get 4074 kB of archives. 2021-06-03T19:02:36.2714351Z After this operation, 17.6 MB of additional disk space will be used. 2021-06-03T19:02:36.2716946Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-06-03T19:02:36.2738363Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-06-03T19:02:36.2746610Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-06-03T19:02:36.2756165Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-06-03T19:02:36.3025263Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-06-03T19:02:36.3045489Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-06-03T19:02:36.3049308Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-06-03T19:02:36.7682385Z Fetched 4074 kB in 0s (38.2 MB/s) 2021-06-03T19:02:36.7965908Z Selecting previously unselected package hdf5-helpers. 2021-06-03T19:02:36.8038170Z (Reading database ... 2021-06-03T19:02:36.8038618Z (Reading database ... 5% 2021-06-03T19:02:36.8039094Z (Reading database ... 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2021-06-03T19:02:36.9061968Z (Reading database ... 241813 files and directories currently installed.) 2021-06-03T19:02:36.9169607Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-06-03T19:02:36.9198839Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:36.9525207Z Selecting previously unselected package libaec0:amd64. 2021-06-03T19:02:36.9750400Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-06-03T19:02:36.9778914Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.0064953Z Selecting previously unselected package libsz2:amd64. 2021-06-03T19:02:37.0293501Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-06-03T19:02:37.0310369Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.0619585Z Selecting previously unselected package libhdf5-103:amd64. 2021-06-03T19:02:37.0878856Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-06-03T19:02:37.0902142Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.2378090Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-06-03T19:02:37.2641459Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-06-03T19:02:37.2657641Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.3055598Z Selecting previously unselected package libaec-dev:amd64. 2021-06-03T19:02:37.3280610Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-06-03T19:02:37.3290769Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.3655173Z Selecting previously unselected package libhdf5-dev. 2021-06-03T19:02:37.3896970Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-06-03T19:02:37.4113740Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.7216820Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.7264226Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.7310268Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.7356715Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-06-03T19:02:37.7392391Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.7430872Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.7469721Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-06-03T19:02:37.7555772Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-06-03T19:02:37.7597421Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:38.4534878Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:40.2246947Z Reading package lists... 2021-06-03T19:02:40.3678176Z Building dependency tree... 2021-06-03T19:02:40.3705775Z Reading state information... 2021-06-03T19:02:40.5172046Z The following additional packages will be installed: 2021-06-03T19:02:40.5175859Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-06-03T19:02:40.5673822Z The following NEW packages will be installed: 2021-06-03T19:02:40.5676163Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-06-03T19:02:40.5677453Z mesa-common-dev 2021-06-03T19:02:40.6055080Z 0 upgraded, 6 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:40.6056290Z Need to get 1761 kB of archives. 2021-06-03T19:02:40.6058402Z After this operation, 5442 kB of additional disk space will be used. 2021-06-03T19:02:40.6060324Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-06-03T19:02:40.6183150Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-06-03T19:02:40.6255777Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-06-03T19:02:40.6377991Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-06-03T19:02:40.6617011Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-06-03T19:02:40.6768367Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-06-03T19:02:41.1226588Z Fetched 1761 kB in 0s (11.0 MB/s) 2021-06-03T19:02:41.1544352Z Selecting previously unselected package libdrm-dev:amd64. 2021-06-03T19:02:41.1586954Z (Reading database ... 2021-06-03T19:02:41.1587452Z (Reading database ... 5% 2021-06-03T19:02:41.1587897Z (Reading database ... 10% 2021-06-03T19:02:41.1588324Z (Reading database ... 15% 2021-06-03T19:02:41.1588762Z (Reading database ... 20% 2021-06-03T19:02:41.1589185Z (Reading database ... 25% 2021-06-03T19:02:41.1589641Z (Reading database ... 30% 2021-06-03T19:02:41.1590082Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-06-03T19:02:41.3215753Z Selecting previously unselected package libglx-dev:amd64. 2021-06-03T19:02:41.3427390Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:02:41.3444041Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-06-03T19:02:41.3895316Z Selecting previously unselected package libgl-dev:amd64. 2021-06-03T19:02:41.4073335Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:02:41.4080364Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-06-03T19:02:41.4575064Z Selecting previously unselected package libglu1-mesa:amd64. 2021-06-03T19:02:41.4767326Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-06-03T19:02:41.4796973Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-06-03T19:02:41.5215557Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-06-03T19:02:41.5411782Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-06-03T19:02:41.5430169Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-06-03T19:02:41.5895456Z Selecting previously unselected package mesa-common-dev:amd64. 2021-06-03T19:02:41.6156741Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:02:41.6167454Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-06-03T19:02:41.7855411Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-06-03T19:02:41.7898176Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-06-03T19:02:41.7934286Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-06-03T19:02:41.7966914Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-06-03T19:02:41.8004464Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-06-03T19:02:41.8041348Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-06-03T19:02:41.8081666Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:43.1506900Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:44.9403151Z Reading package lists... 2021-06-03T19:02:45.0886541Z Building dependency tree... 2021-06-03T19:02:45.0904370Z Reading state information... 2021-06-03T19:02:45.2543053Z The following additional packages will be installed: 2021-06-03T19:02:45.2546041Z libprotobuf-lite17 libprotoc17 2021-06-03T19:02:45.3086423Z The following NEW packages will be installed: 2021-06-03T19:02:45.3088322Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-06-03T19:02:45.3089425Z protobuf-compiler 2021-06-03T19:02:45.3335485Z 0 upgraded, 5 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:45.3337925Z Need to get 2754 kB of archives. 2021-06-03T19:02:45.3339657Z After this operation, 19.9 MB of additional disk space will be used. 2021-06-03T19:02:45.3342227Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-06-03T19:02:45.3470565Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-06-03T19:02:45.4018076Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-06-03T19:02:45.4202593Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-06-03T19:02:45.4281259Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-06-03T19:02:45.8291933Z Fetched 2754 kB in 0s (23.8 MB/s) 2021-06-03T19:02:45.8656361Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-06-03T19:02:45.8675990Z (Reading database ... 2021-06-03T19:02:45.8676432Z (Reading database ... 5% 2021-06-03T19:02:45.8677023Z (Reading database ... 10% 2021-06-03T19:02:45.8677715Z (Reading database ... 15% 2021-06-03T19:02:45.8678585Z (Reading database ... 20% 2021-06-03T19:02:45.8679297Z (Reading database ... 25% 2021-06-03T19:02:45.8680048Z (Reading database ... 30% 2021-06-03T19:02:45.8680678Z (Reading database ... 35% 2021-06-03T19:02:45.8681234Z (Reading database ... 40% 2021-06-03T19:02:45.8681797Z (Reading database ... 45% 2021-06-03T19:02:45.8682359Z (Reading database ... 50% 2021-06-03T19:02:45.8761416Z (Reading database ... 55% 2021-06-03T19:02:45.8804399Z (Reading database ... 60% 2021-06-03T19:02:45.8836738Z (Reading database ... 65% 2021-06-03T19:02:45.8884962Z (Reading database ... 70% 2021-06-03T19:02:45.8909482Z (Reading database ... 75% 2021-06-03T19:02:45.8934862Z (Reading database ... 80% 2021-06-03T19:02:45.9278285Z (Reading database ... 85% 2021-06-03T19:02:45.9342401Z (Reading database ... 90% 2021-06-03T19:02:45.9661650Z (Reading database ... 95% 2021-06-03T19:02:45.9662347Z (Reading database ... 100% 2021-06-03T19:02:45.9662992Z (Reading database ... 242504 files and directories currently installed.) 2021-06-03T19:02:45.9815956Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-06-03T19:02:45.9865805Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.0375629Z Selecting previously unselected package libprotoc17:amd64. 2021-06-03T19:02:46.0588123Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-06-03T19:02:46.0604380Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.1436563Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-06-03T19:02:46.1717306Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-06-03T19:02:46.1735374Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.3370817Z Selecting previously unselected package libprotoc-dev:amd64. 2021-06-03T19:02:46.3634249Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-06-03T19:02:46.3648181Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.4777337Z Selecting previously unselected package protobuf-compiler. 2021-06-03T19:02:46.4991321Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-06-03T19:02:46.5002577Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5553375Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5590960Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5623304Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5654210Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5692017Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-06-03T19:02:46.5728294Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:02:47.2749056Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:02:49.1202252Z Reading package lists... 2021-06-03T19:02:49.2804059Z Building dependency tree... 2021-06-03T19:02:49.2823299Z Reading state information... 2021-06-03T19:02:49.4500195Z The following additional packages will be installed: 2021-06-03T19:02:49.4502516Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-06-03T19:02:49.4503852Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-06-03T19:02:49.4505072Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-06-03T19:02:49.4506529Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-06-03T19:02:49.4508073Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-06-03T19:02:49.4509364Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-06-03T19:02:49.4510689Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-06-03T19:02:49.4512409Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-06-03T19:02:49.4513641Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-06-03T19:02:49.4515561Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-06-03T19:02:49.4517589Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-06-03T19:02:49.4518895Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-06-03T19:02:49.4520121Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-06-03T19:02:49.4521532Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-06-03T19:02:49.4523268Z Suggested packages: 2021-06-03T19:02:49.4524310Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-06-03T19:02:49.4525303Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-06-03T19:02:49.4526859Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-06-03T19:02:49.4528175Z nvidia-legacy-304xx-vdpau-driver 2021-06-03T19:02:49.5239965Z The following NEW packages will be installed: 2021-06-03T19:02:49.5243068Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-06-03T19:02:49.5244348Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-06-03T19:02:49.5247349Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-06-03T19:02:49.5248633Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-06-03T19:02:49.5252031Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-06-03T19:02:49.5253077Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-06-03T19:02:49.5255630Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-06-03T19:02:49.5258765Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-06-03T19:02:49.5259850Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-06-03T19:02:49.5262495Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-06-03T19:02:49.5263555Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-06-03T19:02:49.5265813Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-06-03T19:02:49.5274571Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-06-03T19:02:49.5275830Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-06-03T19:02:49.5575129Z 0 upgraded, 76 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:02:49.5576370Z Need to get 47.1 MB of archives. 2021-06-03T19:02:49.5577423Z After this operation, 195 MB of additional disk space will be used. 2021-06-03T19:02:49.5579274Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-06-03T19:02:49.7121855Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-06-03T19:02:49.7194792Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-06-03T19:02:49.7216668Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-06-03T19:02:49.7279401Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-06-03T19:02:49.7337597Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-06-03T19:02:49.7396053Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-06-03T19:02:49.7759042Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-06-03T19:02:50.6590741Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-06-03T19:02:50.6613218Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-06-03T19:02:50.6740699Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-06-03T19:02:50.6958915Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-06-03T19:02:50.6980329Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-06-03T19:02:50.7015058Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-06-03T19:02:50.7078686Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-06-03T19:02:50.7209827Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-06-03T19:02:50.7291736Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-06-03T19:02:50.7492684Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-06-03T19:02:50.7566028Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-06-03T19:02:50.7656145Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-06-03T19:02:50.7762696Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-06-03T19:02:50.8380749Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-06-03T19:02:50.9569261Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-06-03T19:02:50.9856176Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-06-03T19:02:50.9919274Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-06-03T19:02:51.0289075Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-06-03T19:02:51.6955528Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-06-03T19:02:51.6993714Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-06-03T19:02:51.7027976Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-06-03T19:02:51.7147122Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-06-03T19:02:51.7329629Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-06-03T19:02:51.7385061Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-06-03T19:02:51.7645023Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-06-03T19:02:51.7868783Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-06-03T19:02:51.8638783Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-06-03T19:02:51.8919920Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-06-03T19:02:52.0152424Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-06-03T19:02:52.0184156Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-06-03T19:02:53.5389170Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-06-03T19:02:53.5426341Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-06-03T19:02:53.5488130Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-06-03T19:02:53.5520822Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-06-03T19:02:53.5568952Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-06-03T19:02:53.5627202Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-06-03T19:02:53.5689753Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-06-03T19:02:53.6516461Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-06-03T19:02:53.6598435Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-06-03T19:02:53.6755117Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-06-03T19:02:53.6790880Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-06-03T19:02:53.8780633Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-06-03T19:02:53.9072911Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-06-03T19:02:53.9141311Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-06-03T19:02:53.9167626Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-06-03T19:02:53.9193543Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-06-03T19:02:53.9275168Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-06-03T19:02:53.9307014Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-06-03T19:02:53.9606072Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-06-03T19:02:53.9783964Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-06-03T19:02:53.9826376Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-06-03T19:02:54.0218572Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-06-03T19:02:54.0242809Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-06-03T19:02:54.0337609Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-06-03T19:02:54.0482928Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-06-03T19:02:54.0816637Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-06-03T19:02:54.1382469Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-06-03T19:02:54.1547098Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-06-03T19:02:54.1610421Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-06-03T19:02:54.3346287Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-06-03T19:02:54.3548646Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-06-03T19:02:54.5378135Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-06-03T19:02:54.5422747Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-06-03T19:02:54.5484974Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-06-03T19:02:54.7908439Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-06-03T19:02:55.0321505Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-06-03T19:02:55.1242990Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-06-03T19:02:55.1250334Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-06-03T19:02:55.7494127Z Fetched 47.1 MB in 6s (8422 kB/s) 2021-06-03T19:02:55.7860686Z Selecting previously unselected package libaom0:amd64. 2021-06-03T19:02:55.7960176Z (Reading database ... 2021-06-03T19:02:55.7961468Z (Reading database ... 5% 2021-06-03T19:02:55.7962139Z (Reading database ... 10% 2021-06-03T19:02:55.7962733Z (Reading database ... 15% 2021-06-03T19:02:55.7963348Z (Reading database ... 20% 2021-06-03T19:02:55.7964085Z (Reading database ... 25% 2021-06-03T19:02:55.7964693Z (Reading database ... 30% 2021-06-03T19:02:55.7965246Z (Reading database ... 35% 2021-06-03T19:02:55.7965803Z (Reading database ... 40% 2021-06-03T19:02:55.7966317Z (Reading database ... 45% 2021-06-03T19:02:55.7966872Z (Reading database ... 50% 2021-06-03T19:02:55.8048666Z (Reading database ... 55% 2021-06-03T19:02:55.8093877Z (Reading database ... 60% 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previously unselected package libsratom-0-0:amd64. 2021-06-03T19:03:01.0224887Z Preparing to unpack .../40-libsratom-0-0_0.6.4-1_amd64.deb ... 2021-06-03T19:03:01.0240285Z Unpacking libsratom-0-0:amd64 (0.6.4-1) ... 2021-06-03T19:03:01.0576222Z Selecting previously unselected package liblilv-0-0:amd64. 2021-06-03T19:03:01.0871006Z Preparing to unpack .../41-liblilv-0-0_0.24.6-1ubuntu0.1_amd64.deb ... 2021-06-03T19:03:01.0889154Z Unpacking liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-06-03T19:03:01.1209900Z Selecting previously unselected package libmysofa1:amd64. 2021-06-03T19:03:01.1566777Z Preparing to unpack .../42-libmysofa1_1.0~dfsg0-1_amd64.deb ... 2021-06-03T19:03:01.1582973Z Unpacking libmysofa1:amd64 (1.0~dfsg0-1) ... 2021-06-03T19:03:01.2004096Z Selecting previously unselected package libpostproc55:amd64. 2021-06-03T19:03:01.2256813Z Preparing to unpack .../43-libpostproc55_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-06-03T19:03:01.2274339Z Unpacking libpostproc55:amd64 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(2.7.0-2) ... 2021-06-03T19:03:04.6457611Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.6502157Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-06-03T19:03:04.6539280Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-06-03T19:03:04.6578323Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-06-03T19:03:04.6617120Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-06-03T19:03:04.6657539Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-06-03T19:03:04.6700460Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.6739393Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-06-03T19:03:04.6777694Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-06-03T19:03:04.6817910Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-06-03T19:03:04.6923739Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.6967992Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7005163Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7073382Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-06-03T19:03:04.7115913Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-06-03T19:03:04.7156255Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7205584Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7250515Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7295635Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-06-03T19:03:04.7407383Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:05.7001761Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:07.5799390Z Reading package lists... 2021-06-03T19:03:07.7278625Z Building dependency tree... 2021-06-03T19:03:07.7301558Z Reading state information... 2021-06-03T19:03:07.8844808Z The following additional packages will be installed: 2021-06-03T19:03:07.8847047Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-06-03T19:03:07.9393380Z The following NEW packages will be installed: 2021-06-03T19:03:07.9395683Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-06-03T19:03:07.9396862Z libmagick++-dev 2021-06-03T19:03:07.9596419Z 0 upgraded, 4 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:07.9598376Z Need to get 309 kB of archives. 2021-06-03T19:03:07.9599776Z After this operation, 2202 kB of additional disk space will be used. 2021-06-03T19:03:07.9603233Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-06-03T19:03:07.9627393Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-06-03T19:03:07.9648170Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-06-03T19:03:07.9668547Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-06-03T19:03:08.3763434Z Fetched 309 kB in 0s (13.6 MB/s) 2021-06-03T19:03:08.4104536Z Selecting previously unselected package libmagick++-6-headers. 2021-06-03T19:03:08.4184173Z (Reading database ... 2021-06-03T19:03:08.4185100Z (Reading database ... 5% 2021-06-03T19:03:08.4185760Z (Reading database ... 10% 2021-06-03T19:03:08.4186376Z (Reading database ... 15% 2021-06-03T19:03:08.4186975Z (Reading database ... 20% 2021-06-03T19:03:08.4187568Z (Reading database ... 25% 2021-06-03T19:03:08.4188227Z (Reading database ... 30% 2021-06-03T19:03:08.4188839Z (Reading database ... 35% 2021-06-03T19:03:08.4189612Z (Reading database ... 40% 2021-06-03T19:03:08.4190228Z (Reading database ... 45% 2021-06-03T19:03:08.4190839Z (Reading database ... 50% 2021-06-03T19:03:08.4298227Z (Reading database ... 55% 2021-06-03T19:03:08.4344275Z (Reading database ... 60% 2021-06-03T19:03:08.4402803Z (Reading database ... 65% 2021-06-03T19:03:08.4461166Z (Reading database ... 70% 2021-06-03T19:03:08.4475976Z (Reading database ... 75% 2021-06-03T19:03:08.4523151Z (Reading database ... 80% 2021-06-03T19:03:08.4854713Z (Reading database ... 85% 2021-06-03T19:03:08.4938416Z (Reading database ... 90% 2021-06-03T19:03:08.5240187Z (Reading database ... 95% 2021-06-03T19:03:08.5241073Z (Reading database ... 100% 2021-06-03T19:03:08.5242040Z (Reading database ... 243216 files and directories currently installed.) 2021-06-03T19:03:08.5366948Z Preparing to unpack .../libmagick++-6-headers_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-06-03T19:03:08.5461672Z Unpacking libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.5983938Z Selecting previously unselected package libmagick++-6.q16-8:amd64. 2021-06-03T19:03:08.6244928Z Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-06-03T19:03:08.6276650Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.6735799Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-06-03T19:03:08.6944598Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-06-03T19:03:08.6959666Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.7415820Z Selecting previously unselected package libmagick++-dev. 2021-06-03T19:03:08.7647329Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-06-03T19:03:08.7731843Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.8289361Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.8375716Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.8416199Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.8458173Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-06-03T19:03:08.8556380Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:10.6645692Z Reading package lists... 2021-06-03T19:03:10.8208328Z Building dependency tree... 2021-06-03T19:03:10.8226206Z Reading state information... 2021-06-03T19:03:10.9642273Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-06-03T19:03:10.9644117Z The following additional packages will be installed: 2021-06-03T19:03:10.9645581Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-06-03T19:03:10.9646717Z libijs-0.35 libjbig2dec0 2021-06-03T19:03:10.9649880Z Suggested packages: 2021-06-03T19:03:10.9651178Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-06-03T19:03:10.9652273Z ghostscript-x 2021-06-03T19:03:11.0174963Z The following NEW packages will be installed: 2021-06-03T19:03:11.0176943Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-06-03T19:03:11.0178630Z libgs9-common libijs-0.35 libjbig2dec0 2021-06-03T19:03:11.0364566Z 0 upgraded, 8 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:11.0365265Z Need to get 11.2 MB of archives. 2021-06-03T19:03:11.0367256Z After this operation, 39.1 MB of additional disk space will be used. 2021-06-03T19:03:11.0369118Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-06-03T19:03:11.0864784Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-06-03T19:03:11.0884184Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-06-03T19:03:11.2080034Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-06-03T19:03:11.2226519Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-06-03T19:03:11.2230558Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-06-03T19:03:11.2277023Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-06-03T19:03:11.2902754Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-06-03T19:03:11.6759310Z Fetched 11.2 MB in 0s (41.8 MB/s) 2021-06-03T19:03:11.7159162Z Selecting previously unselected package fonts-droid-fallback. 2021-06-03T19:03:11.7234768Z (Reading database ... 2021-06-03T19:03:11.7235577Z (Reading database ... 5% 2021-06-03T19:03:11.7236652Z (Reading 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... 100% 2021-06-03T19:03:11.8309557Z (Reading database ... 243261 files and directories currently installed.) 2021-06-03T19:03:11.8435071Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-06-03T19:03:11.8669800Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-06-03T19:03:12.0630829Z Selecting previously unselected package fonts-noto-mono. 2021-06-03T19:03:12.0938090Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-06-03T19:03:12.0959446Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-06-03T19:03:12.1336334Z Selecting previously unselected package fonts-urw-base35. 2021-06-03T19:03:12.1584876Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-06-03T19:03:12.2230403Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-06-03T19:03:12.6176141Z Selecting previously unselected package libgs9-common. 2021-06-03T19:03:12.6403848Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-06-03T19:03:12.6416972Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:12.7536253Z Selecting previously unselected package libijs-0.35:amd64. 2021-06-03T19:03:12.7751293Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-06-03T19:03:12.7781319Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-06-03T19:03:12.8134991Z Selecting previously unselected package libjbig2dec0:amd64. 2021-06-03T19:03:12.8322120Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-06-03T19:03:12.8338464Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-06-03T19:03:12.8695352Z Selecting previously unselected package libgs9:amd64. 2021-06-03T19:03:12.8937804Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-06-03T19:03:12.8950761Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:13.1815178Z Selecting previously unselected package ghostscript. 2021-06-03T19:03:13.2067709Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-06-03T19:03:13.2082550Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:13.2742802Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-06-03T19:03:13.2797209Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-06-03T19:03:13.2838033Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-06-03T19:03:13.3444248Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-06-03T19:03:13.3482099Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-06-03T19:03:13.3741949Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:13.3783901Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:13.3825034Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-06-03T19:03:13.3995162Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-06-03T19:03:13.5089528Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:13.5313858Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:16.5192204Z Reading package lists... 2021-06-03T19:03:16.7002523Z Building dependency tree... 2021-06-03T19:03:16.7023771Z Reading state information... 2021-06-03T19:03:16.8960889Z The following additional packages will be installed: 2021-06-03T19:03:16.8963634Z libudunits2-0 libudunits2-data 2021-06-03T19:03:16.9473555Z The following NEW packages will be installed: 2021-06-03T19:03:16.9475913Z libudunits2-0 libudunits2-data libudunits2-dev 2021-06-03T19:03:16.9699365Z 0 upgraded, 3 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:16.9700749Z Need to get 429 kB of archives. 2021-06-03T19:03:16.9702349Z After this operation, 1026 kB of additional disk space will be used. 2021-06-03T19:03:16.9704104Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-06-03T19:03:16.9873618Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-06-03T19:03:16.9967497Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-06-03T19:03:17.4427968Z Fetched 429 kB in 0s (6979 kB/s) 2021-06-03T19:03:17.4727690Z Selecting previously unselected package libudunits2-data. 2021-06-03T19:03:17.4805480Z (Reading database ... 2021-06-03T19:03:17.4806251Z (Reading database ... 5% 2021-06-03T19:03:17.4806909Z (Reading database ... 10% 2021-06-03T19:03:17.4807633Z (Reading database ... 15% 2021-06-03T19:03:17.4808275Z (Reading database ... 20% 2021-06-03T19:03:17.4808920Z (Reading database ... 25% 2021-06-03T19:03:17.4809710Z (Reading database ... 30% 2021-06-03T19:03:17.4810509Z (Reading database ... 35% 2021-06-03T19:03:17.4811133Z (Reading database ... 40% 2021-06-03T19:03:17.4811942Z (Reading database ... 45% 2021-06-03T19:03:17.4812837Z (Reading database ... 50% 2021-06-03T19:03:17.4888629Z (Reading database ... 55% 2021-06-03T19:03:17.4929156Z (Reading database ... 60% 2021-06-03T19:03:17.4985473Z (Reading database ... 65% 2021-06-03T19:03:17.5016684Z (Reading database ... 70% 2021-06-03T19:03:17.5039173Z (Reading database ... 75% 2021-06-03T19:03:17.5068927Z (Reading database ... 80% 2021-06-03T19:03:17.5371949Z (Reading database ... 85% 2021-06-03T19:03:17.5473031Z (Reading database ... 90% 2021-06-03T19:03:17.5824895Z (Reading database ... 95% 2021-06-03T19:03:17.5826579Z (Reading database ... 100% 2021-06-03T19:03:17.5828510Z (Reading database ... 243825 files and directories currently installed.) 2021-06-03T19:03:17.5963227Z Preparing to unpack .../libudunits2-data_2.2.26-5_all.deb ... 2021-06-03T19:03:17.5972476Z Unpacking libudunits2-data (2.2.26-5) ... 2021-06-03T19:03:17.6295154Z Selecting previously unselected package libudunits2-0:amd64. 2021-06-03T19:03:17.6550645Z Preparing to unpack .../libudunits2-0_2.2.26-5_amd64.deb ... 2021-06-03T19:03:17.6575539Z Unpacking libudunits2-0:amd64 (2.2.26-5) ... 2021-06-03T19:03:17.6936156Z Selecting previously unselected package libudunits2-dev:amd64. 2021-06-03T19:03:17.7135718Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-06-03T19:03:17.7148449Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-06-03T19:03:17.7964720Z Setting up libudunits2-data (2.2.26-5) ... 2021-06-03T19:03:17.8011289Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-06-03T19:03:17.8066903Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-06-03T19:03:17.8107687Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-06-03T19:03:17.9236642Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:19.7267647Z Reading package lists... 2021-06-03T19:03:19.9180168Z Building dependency tree... 2021-06-03T19:03:19.9204296Z Reading state information... 2021-06-03T19:03:20.1352218Z The following NEW packages will be installed: 2021-06-03T19:03:20.1355028Z libjq-dev 2021-06-03T19:03:20.1552196Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:20.1553295Z Need to get 11.2 kB of archives. 2021-06-03T19:03:20.1554210Z After this operation, 47.1 kB of additional disk space will be used. 2021-06-03T19:03:20.1556164Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-06-03T19:03:20.5750844Z Fetched 11.2 kB in 0s (702 kB/s) 2021-06-03T19:03:20.6076115Z Selecting previously unselected package libjq-dev:amd64. 2021-06-03T19:03:20.6150313Z (Reading database ... 2021-06-03T19:03:20.6151305Z (Reading database ... 5% 2021-06-03T19:03:20.6151982Z (Reading database ... 10% 2021-06-03T19:03:20.6152616Z (Reading database ... 15% 2021-06-03T19:03:20.6153266Z (Reading database ... 20% 2021-06-03T19:03:20.6153905Z (Reading database ... 25% 2021-06-03T19:03:20.6154527Z (Reading database ... 30% 2021-06-03T19:03:20.6155167Z (Reading database ... 35% 2021-06-03T19:03:20.6155816Z (Reading database ... 40% 2021-06-03T19:03:20.6156439Z (Reading database ... 45% 2021-06-03T19:03:20.6157077Z (Reading database ... 50% 2021-06-03T19:03:20.6241154Z (Reading database ... 55% 2021-06-03T19:03:20.6291066Z (Reading database ... 60% 2021-06-03T19:03:20.6351033Z (Reading database ... 65% 2021-06-03T19:03:20.6380011Z (Reading database ... 70% 2021-06-03T19:03:20.6406094Z (Reading database ... 75% 2021-06-03T19:03:20.6437834Z (Reading database ... 80% 2021-06-03T19:03:20.6759851Z (Reading database ... 85% 2021-06-03T19:03:20.6844873Z (Reading database ... 90% 2021-06-03T19:03:20.7210053Z (Reading database ... 95% 2021-06-03T19:03:20.7210786Z (Reading database ... 100% 2021-06-03T19:03:20.7211504Z (Reading database ... 243854 files and directories currently installed.) 2021-06-03T19:03:20.7351842Z Preparing to unpack .../libjq-dev_1.6-1ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:03:20.7364774Z Unpacking libjq-dev:amd64 (1.6-1ubuntu0.20.04.1) ... 2021-06-03T19:03:20.7994706Z Setting up libjq-dev:amd64 (1.6-1ubuntu0.20.04.1) ... 2021-06-03T19:03:22.6658147Z Reading package lists... 2021-06-03T19:03:22.8191175Z Building dependency tree... 2021-06-03T19:03:22.8210160Z Reading state information... 2021-06-03T19:03:23.0236552Z The following NEW packages will be installed: 2021-06-03T19:03:23.0238505Z libmng2 2021-06-03T19:03:23.0443202Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:23.0444021Z Need to get 168 kB of archives. 2021-06-03T19:03:23.0444645Z After this operation, 571 kB of additional disk space will be used. 2021-06-03T19:03:23.0446251Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-06-03T19:03:23.4608504Z Fetched 168 kB in 0s (8496 kB/s) 2021-06-03T19:03:23.4928083Z Selecting previously unselected package libmng2:amd64. 2021-06-03T19:03:23.5002638Z (Reading database ... 2021-06-03T19:03:23.5003376Z (Reading database ... 5% 2021-06-03T19:03:23.5004190Z (Reading database ... 10% 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2021-06-03T19:03:23.5984591Z (Reading database ... 243860 files and directories currently installed.) 2021-06-03T19:03:23.6095037Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-06-03T19:03:23.6117708Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-06-03T19:03:23.6817219Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-06-03T19:03:23.6860000Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:25.5218738Z Reading package lists... 2021-06-03T19:03:25.6803568Z Building dependency tree... 2021-06-03T19:03:25.6821521Z Reading state information... 2021-06-03T19:03:25.8025553Z E: Unable to locate package libmng1 2021-06-03T19:03:25.8636125Z Reading package lists... 2021-06-03T19:03:26.0067969Z Building dependency tree... 2021-06-03T19:03:26.0087676Z Reading state information... 2021-06-03T19:03:26.1299831Z E: Unable to locate package libapparmor-devel 2021-06-03T19:03:26.1970029Z Reading package lists... 2021-06-03T19:03:26.3459939Z Building dependency tree... 2021-06-03T19:03:26.3479058Z Reading state information... 2021-06-03T19:03:26.4881368Z The following additional packages will be installed: 2021-06-03T19:03:26.4882970Z libij-java 2021-06-03T19:03:26.5376539Z The following NEW packages will be installed: 2021-06-03T19:03:26.5381182Z imagej libij-java 2021-06-03T19:03:26.5556090Z 0 upgraded, 2 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:26.5557293Z Need to get 2328 kB of archives. 2021-06-03T19:03:26.5558394Z After this operation, 2498 kB of additional disk space will be used. 2021-06-03T19:03:26.5560651Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-06-03T19:03:26.5825130Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-06-03T19:03:27.1154227Z Fetched 2328 kB in 0s (57.3 MB/s) 2021-06-03T19:03:27.1164306Z Selecting previously unselected package libij-java. 2021-06-03T19:03:27.1165294Z (Reading 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90% 2021-06-03T19:03:27.1557857Z (Reading database ... 95% 2021-06-03T19:03:27.1558640Z (Reading database ... 100% 2021-06-03T19:03:27.1559457Z (Reading database ... 243866 files and directories currently installed.) 2021-06-03T19:03:27.1695012Z Preparing to unpack .../libij-java_1.52r-1_all.deb ... 2021-06-03T19:03:27.1711587Z Unpacking libij-java (1.52r-1) ... 2021-06-03T19:03:27.2638628Z Selecting previously unselected package imagej. 2021-06-03T19:03:27.2913970Z Preparing to unpack .../imagej_1.52r-1_all.deb ... 2021-06-03T19:03:27.2927042Z Unpacking imagej (1.52r-1) ... 2021-06-03T19:03:27.3966313Z Setting up libij-java (1.52r-1) ... 2021-06-03T19:03:27.4005009Z Setting up imagej (1.52r-1) ... 2021-06-03T19:03:27.4046759Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-06-03T19:03:27.9612487Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:28.6518346Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-06-03T19:03:30.5990352Z Reading package lists... 2021-06-03T19:03:30.7613193Z Building dependency tree... 2021-06-03T19:03:30.7634557Z Reading state information... 2021-06-03T19:03:30.9200268Z Suggested packages: 2021-06-03T19:03:30.9202632Z bowtie2-examples 2021-06-03T19:03:30.9736281Z The following NEW packages will be installed: 2021-06-03T19:03:30.9742753Z bowtie2 2021-06-03T19:03:31.0349477Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:31.0351219Z Need to get 1324 kB of archives. 2021-06-03T19:03:31.0352564Z After this operation, 5630 kB of additional disk space will be used. 2021-06-03T19:03:31.0354989Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-06-03T19:03:31.7083717Z Fetched 1324 kB in 0s (4507 kB/s) 2021-06-03T19:03:31.7377252Z Selecting previously unselected package bowtie2. 2021-06-03T19:03:31.7468652Z (Reading database ... 2021-06-03T19:03:31.7469433Z (Reading database ... 5% 2021-06-03T19:03:31.7470064Z (Reading database ... 10% 2021-06-03T19:03:31.7470689Z (Reading database ... 15% 2021-06-03T19:03:31.7471307Z (Reading database ... 20% 2021-06-03T19:03:31.7471927Z (Reading database ... 25% 2021-06-03T19:03:31.7472541Z (Reading database ... 30% 2021-06-03T19:03:31.7473326Z (Reading database ... 35% 2021-06-03T19:03:31.7474123Z (Reading database ... 40% 2021-06-03T19:03:31.7474761Z (Reading database ... 45% 2021-06-03T19:03:31.7475401Z (Reading database ... 50% 2021-06-03T19:03:31.7569052Z (Reading database ... 55% 2021-06-03T19:03:31.7605060Z (Reading database ... 60% 2021-06-03T19:03:31.7666825Z (Reading database ... 65% 2021-06-03T19:03:31.7694740Z (Reading database ... 70% 2021-06-03T19:03:31.7719969Z (Reading database ... 75% 2021-06-03T19:03:31.7755017Z (Reading database ... 80% 2021-06-03T19:03:31.8073969Z (Reading database ... 85% 2021-06-03T19:03:31.8169435Z (Reading database ... 90% 2021-06-03T19:03:31.8507069Z (Reading database ... 95% 2021-06-03T19:03:31.8509009Z (Reading database ... 100% 2021-06-03T19:03:31.8511016Z (Reading database ... 243889 files and directories currently installed.) 2021-06-03T19:03:31.8653368Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-06-03T19:03:31.8667462Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-06-03T19:03:32.0490683Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-06-03T19:03:32.0540520Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:34.6561461Z Reading package lists... 2021-06-03T19:03:34.8141336Z Building dependency tree... 2021-06-03T19:03:34.8164080Z Reading state information... 2021-06-03T19:03:34.9427211Z E: Unable to locate package install 2021-06-03T19:03:34.9428438Z E: Unable to locate package gdal 2021-06-03T19:03:35.0083907Z Reading package lists... 2021-06-03T19:03:35.1845523Z Building dependency tree... 2021-06-03T19:03:35.1864089Z Reading state information... 2021-06-03T19:03:35.2105878Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-06-03T19:03:35.2107488Z This may mean that the package is missing, has been obsoleted, or 2021-06-03T19:03:35.2108362Z is only available from another source 2021-06-03T19:03:35.2108876Z 2021-06-03T19:03:35.3083369Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-06-03T19:03:35.3695718Z Reading package lists... 2021-06-03T19:03:35.5154864Z Building dependency tree... 2021-06-03T19:03:35.5174972Z Reading state information... 2021-06-03T19:03:35.5401606Z Package libav-tools is not available, but is referred to by another package. 2021-06-03T19:03:35.5402826Z This may mean that the package is missing, has been obsoleted, or 2021-06-03T19:03:35.5403660Z is only available from another source 2021-06-03T19:03:35.5404445Z However the following packages replace it: 2021-06-03T19:03:35.5405087Z ffmpeg 2021-06-03T19:03:35.5405641Z 2021-06-03T19:03:35.6344372Z E: Package 'libav-tools' has no installation candidate 2021-06-03T19:03:35.6968104Z Reading package lists... 2021-06-03T19:03:35.8524341Z Building dependency tree... 2021-06-03T19:03:35.8545098Z Reading state information... 2021-06-03T19:03:35.9958093Z The following additional packages will be installed: 2021-06-03T19:03:35.9960701Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-06-03T19:03:35.9961906Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-06-03T19:03:35.9962757Z libssh2-1-dev 2021-06-03T19:03:35.9965417Z Suggested packages: 2021-06-03T19:03:35.9966137Z libgcrypt20-doc libmbedtls-doc 2021-06-03T19:03:36.0468491Z The following NEW packages will be installed: 2021-06-03T19:03:36.0470210Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-06-03T19:03:36.0474142Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-06-03T19:03:36.0478263Z libssh2-1-dev 2021-06-03T19:03:36.0701486Z 0 upgraded, 11 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:36.0702676Z Need to get 2667 kB of archives. 2021-06-03T19:03:36.0703343Z After this operation, 11.2 MB of additional disk space will be used. 2021-06-03T19:03:36.0705513Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-06-03T19:03:36.0745736Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-06-03T19:03:36.0832194Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-06-03T19:03:36.1068338Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-06-03T19:03:36.1317625Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-06-03T19:03:36.1452519Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-06-03T19:03:36.1565871Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-06-03T19:03:36.1853813Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-06-03T19:03:36.2159184Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-06-03T19:03:36.2275081Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-06-03T19:03:36.2360730Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-06-03T19:03:36.6762534Z Fetched 2667 kB in 0s (11.8 MB/s) 2021-06-03T19:03:36.7095872Z Selecting previously unselected package libgpg-error-dev. 2021-06-03T19:03:36.7114008Z (Reading database ... 2021-06-03T19:03:36.7114728Z (Reading database ... 5% 2021-06-03T19:03:36.7116100Z (Reading database 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2021-06-03T19:03:36.8161634Z (Reading database ... 243915 files and directories currently installed.) 2021-06-03T19:03:36.8275145Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-06-03T19:03:36.8290473Z Unpacking libgpg-error-dev (1.37-1) ... 2021-06-03T19:03:36.8735714Z Selecting previously unselected package libgcrypt20-dev. 2021-06-03T19:03:36.8950449Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-06-03T19:03:36.8964585Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-06-03T19:03:36.9735641Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-06-03T19:03:36.9933215Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-06-03T19:03:36.9960501Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-06-03T19:03:37.0276242Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-06-03T19:03:37.0511519Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-06-03T19:03:37.0522418Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:37.0965790Z Selecting previously unselected package libmbedx509-0:amd64. 2021-06-03T19:03:37.1228789Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-06-03T19:03:37.1244271Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:37.1559749Z Selecting previously unselected package libmbedtls12:amd64. 2021-06-03T19:03:37.1836787Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-06-03T19:03:37.1849148Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:37.2281762Z Selecting previously unselected package libgit2-28:amd64. 2021-06-03T19:03:37.2499731Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-06-03T19:03:37.2516370Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-06-03T19:03:37.3136079Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-06-03T19:03:37.3382218Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-06-03T19:03:37.3397066Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:37.4169280Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-06-03T19:03:37.4448596Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-06-03T19:03:37.4460325Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-06-03T19:03:37.5044990Z Selecting previously unselected package libhttp-parser-dev. 2021-06-03T19:03:37.5319133Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-06-03T19:03:37.5329190Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-06-03T19:03:37.5655233Z Selecting previously unselected package libgit2-dev:amd64. 2021-06-03T19:03:37.5877171Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-06-03T19:03:37.5891978Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-06-03T19:03:38.1179471Z Setting up libgpg-error-dev (1.37-1) ... 2021-06-03T19:03:38.1183789Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:38.1185296Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-06-03T19:03:38.1186358Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-06-03T19:03:38.1187902Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:38.1188791Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:38.1189643Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-06-03T19:03:38.1190620Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-06-03T19:03:38.1191570Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-06-03T19:03:38.1192490Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-06-03T19:03:38.1193262Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-06-03T19:03:38.1194167Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:42.4143452Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-06-03T19:03:42.5272226Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:44.3499992Z Reading package lists... 2021-06-03T19:03:44.4972509Z Building dependency tree... 2021-06-03T19:03:44.4995533Z Reading state information... 2021-06-03T19:03:44.7438416Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-06-03T19:03:44.7439750Z libtiff-dev set to manually installed. 2021-06-03T19:03:44.7440699Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:44.8058705Z Reading package lists... 2021-06-03T19:03:44.9586559Z Building dependency tree... 2021-06-03T19:03:44.9606716Z Reading state information... 2021-06-03T19:03:45.1986853Z unixodbc-dev is already the newest version (2.3.7). 2021-06-03T19:03:45.1987852Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:45.2611310Z Reading package lists... 2021-06-03T19:03:45.4118133Z Building dependency tree... 2021-06-03T19:03:45.4139389Z Reading state information... 2021-06-03T19:03:45.6126232Z The following NEW packages will be installed: 2021-06-03T19:03:45.6128763Z libsodium-dev 2021-06-03T19:03:45.6334104Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:45.6336176Z Need to get 169 kB of archives. 2021-06-03T19:03:45.6337846Z After this operation, 826 kB of additional disk space will be used. 2021-06-03T19:03:45.6339644Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-06-03T19:03:46.0305166Z Fetched 169 kB in 0s (8243 kB/s) 2021-06-03T19:03:46.0600497Z Selecting previously unselected package libsodium-dev:amd64. 2021-06-03T19:03:46.0673776Z (Reading database ... 2021-06-03T19:03:46.0674283Z (Reading database ... 5% 2021-06-03T19:03:46.0674691Z (Reading database ... 10% 2021-06-03T19:03:46.0675489Z (Reading database ... 15% 2021-06-03T19:03:46.0675940Z (Reading database ... 20% 2021-06-03T19:03:46.0676598Z (Reading database ... 25% 2021-06-03T19:03:46.0677082Z (Reading database ... 30% 2021-06-03T19:03:46.0679758Z (Reading database ... 35% 2021-06-03T19:03:46.0680202Z (Reading database ... 40% 2021-06-03T19:03:46.0680633Z (Reading database ... 45% 2021-06-03T19:03:46.0681235Z (Reading database ... 50% 2021-06-03T19:03:46.0800050Z (Reading database ... 55% 2021-06-03T19:03:46.0844667Z (Reading database ... 60% 2021-06-03T19:03:46.0909324Z (Reading database ... 65% 2021-06-03T19:03:46.0945899Z (Reading database ... 70% 2021-06-03T19:03:46.0978324Z (Reading database ... 75% 2021-06-03T19:03:46.1023148Z (Reading database ... 80% 2021-06-03T19:03:46.1429926Z (Reading database ... 85% 2021-06-03T19:03:46.1504458Z (Reading database ... 90% 2021-06-03T19:03:46.1903445Z (Reading database ... 95% 2021-06-03T19:03:46.1904357Z (Reading database ... 100% 2021-06-03T19:03:46.1905575Z (Reading database ... 244418 files and directories currently installed.) 2021-06-03T19:03:46.2045733Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-06-03T19:03:46.2060412Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-06-03T19:03:46.2988949Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-06-03T19:03:48.0803619Z Reading package lists... 2021-06-03T19:03:48.2309308Z Building dependency tree... 2021-06-03T19:03:48.2329496Z Reading state information... 2021-06-03T19:03:48.3929059Z The following additional packages will be installed: 2021-06-03T19:03:48.3937457Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-06-03T19:03:48.4401408Z The following NEW packages will be installed: 2021-06-03T19:03:48.4407171Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-06-03T19:03:48.4408966Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-06-03T19:03:48.4608012Z 0 upgraded, 8 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:48.4608809Z Need to get 10.4 MB of archives. 2021-06-03T19:03:48.4609615Z After this operation, 38.0 MB of additional disk space will be used. 2021-06-03T19:03:48.4611910Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-06-03T19:03:48.4736835Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-06-03T19:03:48.4904900Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-06-03T19:03:48.5163644Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-06-03T19:03:48.5361844Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-06-03T19:03:48.6377091Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-06-03T19:03:48.6633774Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-06-03T19:03:48.7128902Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-06-03T19:03:49.1270560Z Fetched 10.4 MB in 0s (38.5 MB/s) 2021-06-03T19:03:49.1560426Z Selecting previously unselected package libarchive-dev:amd64. 2021-06-03T19:03:49.1636697Z (Reading database ... 2021-06-03T19:03:49.1637437Z (Reading database ... 5% 2021-06-03T19:03:49.1638075Z (Reading database ... 10% 2021-06-03T19:03:49.1638718Z (Reading database ... 15% 2021-06-03T19:03:49.1639339Z (Reading database ... 20% 2021-06-03T19:03:49.1639974Z (Reading database ... 25% 2021-06-03T19:03:49.1640605Z (Reading database ... 30% 2021-06-03T19:03:49.1641217Z (Reading database ... 35% 2021-06-03T19:03:49.1641871Z (Reading database ... 40% 2021-06-03T19:03:49.1642494Z (Reading database ... 45% 2021-06-03T19:03:49.1643110Z (Reading database ... 50% 2021-06-03T19:03:49.1746135Z (Reading database ... 55% 2021-06-03T19:03:49.1789368Z (Reading database ... 60% 2021-06-03T19:03:49.1850414Z (Reading database ... 65% 2021-06-03T19:03:49.1884899Z (Reading database ... 70% 2021-06-03T19:03:49.1908658Z (Reading database ... 75% 2021-06-03T19:03:49.1940834Z (Reading database ... 80% 2021-06-03T19:03:49.2272945Z (Reading database ... 85% 2021-06-03T19:03:49.2353230Z (Reading database ... 90% 2021-06-03T19:03:49.2657287Z (Reading database ... 95% 2021-06-03T19:03:49.2659058Z (Reading database ... 100% 2021-06-03T19:03:49.2661296Z (Reading database ... 244488 files and directories currently installed.) 2021-06-03T19:03:49.2800362Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ... 2021-06-03T19:03:49.2812953Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-06-03T19:03:49.3575735Z Selecting previously unselected package liblept5:amd64. 2021-06-03T19:03:49.3818058Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ... 2021-06-03T19:03:49.3844333Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-06-03T19:03:49.5016234Z Selecting previously unselected package libleptonica-dev:amd64. 2021-06-03T19:03:49.5245480Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-06-03T19:03:49.5260188Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-06-03T19:03:49.6706180Z Selecting previously unselected package libtesseract4:amd64. 2021-06-03T19:03:49.7001647Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-06-03T19:03:49.7019226Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-06-03T19:03:49.8496459Z Selecting previously unselected package libtesseract-dev:amd64. 2021-06-03T19:03:49.8770525Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-06-03T19:03:49.8798043Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-06-03T19:03:50.0455837Z Selecting previously unselected package tesseract-ocr-eng. 2021-06-03T19:03:50.0747439Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-06-03T19:03:50.0758595Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-06-03T19:03:50.2396481Z Selecting previously unselected package tesseract-ocr-osd. 2021-06-03T19:03:50.2673767Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-06-03T19:03:50.2688138Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-06-03T19:03:50.6275231Z Selecting previously unselected package tesseract-ocr. 2021-06-03T19:03:50.6560492Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-06-03T19:03:50.6580148Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-06-03T19:03:50.7532922Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-06-03T19:03:50.7574446Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-06-03T19:03:50.7605118Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-06-03T19:03:50.7641465Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-06-03T19:03:50.7673830Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-06-03T19:03:50.7706522Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-06-03T19:03:50.7742826Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-06-03T19:03:50.7774097Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-06-03T19:03:50.7813341Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:03:53.6221871Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:55.4620317Z Reading package lists... 2021-06-03T19:03:55.6236641Z Building dependency tree... 2021-06-03T19:03:55.6255685Z Reading state information... 2021-06-03T19:03:55.8861711Z wget is already the newest version (1.20.3-1ubuntu1). 2021-06-03T19:03:55.8863476Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:55.9506905Z Reading package lists... 2021-06-03T19:03:56.1304209Z Building dependency tree... 2021-06-03T19:03:56.1327285Z Reading state information... 2021-06-03T19:03:56.3097509Z The following additional packages will be installed: 2021-06-03T19:03:56.3099981Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-06-03T19:03:56.3101553Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-06-03T19:03:56.3107701Z Suggested packages: 2021-06-03T19:03:56.3109262Z doc-base krb5-doc krb5-user libnorm-doc 2021-06-03T19:03:56.3624526Z The following NEW packages will be installed: 2021-06-03T19:03:56.3626513Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-06-03T19:03:56.3629359Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-06-03T19:03:56.4074180Z 0 upgraded, 10 newly installed, 0 to remove and 38 not upgraded. 2021-06-03T19:03:56.4075315Z Need to get 1459 kB of archives. 2021-06-03T19:03:56.4076357Z After this operation, 7754 kB of additional disk space will be used. 2021-06-03T19:03:56.4077906Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-06-03T19:03:56.4217657Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-06-03T19:03:56.4310490Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-06-03T19:03:56.4389768Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-06-03T19:03:56.4464413Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-06-03T19:03:56.4560635Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-06-03T19:03:56.4703695Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-06-03T19:03:56.5127758Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-06-03T19:03:56.5253103Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-06-03T19:03:56.5289850Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-06-03T19:03:56.9726682Z Fetched 1459 kB in 0s (8098 kB/s) 2021-06-03T19:03:57.0073554Z Selecting previously unselected package libgssrpc4:amd64. 2021-06-03T19:03:57.0151229Z (Reading database ... 2021-06-03T19:03:57.0153840Z (Reading database ... 5% 2021-06-03T19:03:57.0154951Z (Reading database ... 10% 2021-06-03T19:03:57.0156017Z (Reading database ... 15% 2021-06-03T19:03:57.0157309Z (Reading database ... 20% 2021-06-03T19:03:57.0158280Z (Reading database ... 25% 2021-06-03T19:03:57.0158966Z (Reading database ... 30% 2021-06-03T19:03:57.0159606Z (Reading database ... 35% 2021-06-03T19:03:57.0160586Z (Reading database ... 40% 2021-06-03T19:03:57.0161227Z (Reading database ... 45% 2021-06-03T19:03:57.0161846Z (Reading database ... 50% 2021-06-03T19:03:57.0237439Z (Reading database ... 55% 2021-06-03T19:03:57.0282935Z (Reading database ... 60% 2021-06-03T19:03:57.0317819Z (Reading database ... 65% 2021-06-03T19:03:57.0385280Z (Reading database ... 70% 2021-06-03T19:03:57.0413361Z (Reading database ... 75% 2021-06-03T19:03:57.0448371Z (Reading database ... 80% 2021-06-03T19:03:57.0856704Z (Reading database ... 85% 2021-06-03T19:03:57.0971724Z (Reading database ... 90% 2021-06-03T19:03:57.1340345Z (Reading database ... 95% 2021-06-03T19:03:57.1341913Z (Reading database ... 100% 2021-06-03T19:03:57.1345985Z (Reading database ... 244713 files and directories currently installed.) 2021-06-03T19:03:57.1468445Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.1495106Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.1855790Z Selecting previously unselected package libkdb5-9:amd64. 2021-06-03T19:03:57.2116493Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.2130861Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.2468328Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-06-03T19:03:57.2692608Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.2704467Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.2994097Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-06-03T19:03:57.3258117Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.3273763Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.3615869Z Selecting previously unselected package comerr-dev:amd64. 2021-06-03T19:03:57.3850753Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-06-03T19:03:57.3886893Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-06-03T19:03:57.4215749Z Selecting previously unselected package krb5-multidev:amd64. 2021-06-03T19:03:57.4440091Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.4452103Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.4877220Z Selecting previously unselected package libnorm-dev:amd64. 2021-06-03T19:03:57.5151449Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-06-03T19:03:57.5162325Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-06-03T19:03:57.5897216Z Selecting previously unselected package libpgm-dev:amd64. 2021-06-03T19:03:57.6125481Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-06-03T19:03:57.6139764Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-06-03T19:03:57.6616342Z Selecting previously unselected package libkrb5-dev:amd64. 2021-06-03T19:03:57.6870553Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-06-03T19:03:57.6890076Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.7159688Z Selecting previously unselected package libzmq3-dev:amd64. 2021-06-03T19:03:57.7446364Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-06-03T19:03:57.7461203Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-06-03T19:03:57.8570998Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-06-03T19:03:57.8597314Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8652759Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-06-03T19:03:57.8684413Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-06-03T19:03:57.8734477Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8775184Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8814317Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8857976Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8899942Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-06-03T19:03:57.8939350Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-06-03T19:03:57.8995286Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:03:57.9209628Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:04:00.9477527Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-06-03T19:04:02.8393881Z Reading package lists... 2021-06-03T19:04:02.9816734Z Building dependency tree... 2021-06-03T19:04:02.9836186Z Reading state information... 2021-06-03T19:04:03.1041245Z E: Unable to locate package udunits 2021-06-03T19:04:03.1713852Z Reading package lists... 2021-06-03T19:04:03.3274451Z Building dependency tree... 2021-06-03T19:04:03.3297526Z Reading state information... 2021-06-03T19:04:03.4782825Z The following additional packages will be installed: 2021-06-03T19:04:03.4791244Z libwebp6 libwebpdemux2 libwebpmux3 2021-06-03T19:04:03.5355873Z The following NEW packages will be installed: 2021-06-03T19:04:03.5360512Z libwebp-dev libwebpdemux2 2021-06-03T19:04:03.5368778Z The following packages will be upgraded: 2021-06-03T19:04:03.5372232Z libwebp6 libwebpmux3 2021-06-03T19:04:03.5565442Z 2 upgraded, 2 newly installed, 0 to remove and 36 not upgraded. 2021-06-03T19:04:03.5566129Z Need to get 480 kB of archives. 2021-06-03T19:04:03.5566997Z After this operation, 985 kB of additional disk space will be used. 2021-06-03T19:04:03.5569704Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebp6 amd64 0.6.1-2ubuntu0.20.04.1 [185 kB] 2021-06-03T19:04:03.5617781Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebpdemux2 amd64 0.6.1-2ubuntu0.20.04.1 [9576 B] 2021-06-03T19:04:03.5626498Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebpmux3 amd64 0.6.1-2ubuntu0.20.04.1 [19.5 kB] 2021-06-03T19:04:03.5635745Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebp-dev amd64 0.6.1-2ubuntu0.20.04.1 [266 kB] 2021-06-03T19:04:03.9616326Z Fetched 480 kB in 0s (18.3 MB/s) 2021-06-03T19:04:03.9984227Z (Reading database ... 2021-06-03T19:04:03.9985013Z (Reading database ... 5% 2021-06-03T19:04:03.9985813Z (Reading database ... 10% 2021-06-03T19:04:03.9986478Z (Reading database ... 15% 2021-06-03T19:04:03.9988591Z (Reading database ... 20% 2021-06-03T19:04:03.9989386Z (Reading database ... 25% 2021-06-03T19:04:03.9990156Z (Reading database ... 30% 2021-06-03T19:04:03.9991381Z (Reading database ... 35% 2021-06-03T19:04:03.9992155Z (Reading database ... 40% 2021-06-03T19:04:03.9992779Z (Reading database ... 45% 2021-06-03T19:04:03.9993438Z (Reading database ... 50% 2021-06-03T19:04:04.0068203Z (Reading database ... 55% 2021-06-03T19:04:04.0120883Z (Reading database ... 60% 2021-06-03T19:04:04.0156351Z (Reading database ... 65% 2021-06-03T19:04:04.0213826Z (Reading database ... 70% 2021-06-03T19:04:04.0238877Z (Reading database ... 75% 2021-06-03T19:04:04.0267588Z (Reading database ... 80% 2021-06-03T19:04:04.0621075Z (Reading database ... 85% 2021-06-03T19:04:04.0717583Z (Reading database ... 90% 2021-06-03T19:04:04.1027051Z (Reading database ... 95% 2021-06-03T19:04:04.1027519Z (Reading database ... 100% 2021-06-03T19:04:04.1028185Z (Reading database ... 245013 files and directories currently installed.) 2021-06-03T19:04:04.1134369Z Preparing to unpack .../libwebp6_0.6.1-2ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:04.1269328Z Unpacking libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) over (0.6.1-2) ... 2021-06-03T19:04:04.1815558Z Selecting previously unselected package libwebpdemux2:amd64. 2021-06-03T19:04:04.2011240Z Preparing to unpack .../libwebpdemux2_0.6.1-2ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:04.2027272Z Unpacking libwebpdemux2:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.2633477Z Preparing to unpack .../libwebpmux3_0.6.1-2ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:04.2747401Z Unpacking libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) over (0.6.1-2) ... 2021-06-03T19:04:04.3056367Z Selecting previously unselected package libwebp-dev:amd64. 2021-06-03T19:04:04.3283049Z Preparing to unpack .../libwebp-dev_0.6.1-2ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:04.3296435Z Unpacking libwebp-dev:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.4110028Z Setting up libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.4162500Z Setting up libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.4208447Z Setting up libwebpdemux2:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.4250376Z Setting up libwebp-dev:amd64 (0.6.1-2ubuntu0.20.04.1) ... 2021-06-03T19:04:04.4292772Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:04:06.2538210Z Reading package lists... 2021-06-03T19:04:06.4162777Z Building dependency tree... 2021-06-03T19:04:06.4182420Z Reading state information... 2021-06-03T19:04:06.5716428Z The following additional packages will be installed: 2021-06-03T19:04:06.5719629Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-06-03T19:04:06.5721871Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-06-03T19:04:06.5723362Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-06-03T19:04:06.5730711Z Suggested packages: 2021-06-03T19:04:06.5731526Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-06-03T19:04:06.5732033Z Recommended packages: 2021-06-03T19:04:06.5732374Z cargo 2021-06-03T19:04:06.6272381Z The following NEW packages will be installed: 2021-06-03T19:04:06.6276317Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-06-03T19:04:06.6277872Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-06-03T19:04:06.6279472Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-06-03T19:04:06.6525931Z 0 upgraded, 13 newly installed, 0 to remove and 36 not upgraded. 2021-06-03T19:04:06.6527478Z Need to get 108 MB of archives. 2021-06-03T19:04:06.6529534Z After this operation, 501 MB of additional disk space will be used. 2021-06-03T19:04:06.6531625Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-06-03T19:04:06.6580145Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-06-03T19:04:06.6603907Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-06-03T19:04:06.6618045Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-06-03T19:04:06.6724762Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-06-03T19:04:06.6750779Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-06-03T19:04:06.6818960Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-06-03T19:04:06.8077613Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-06-03T19:04:08.6221662Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-06-03T19:04:09.5619222Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-06-03T19:04:09.6367201Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-06-03T19:04:09.7575754Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-06-03T19:04:09.9662129Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-06-03T19:04:10.4026504Z Fetched 108 MB in 3s (32.4 MB/s) 2021-06-03T19:04:10.4353035Z Selecting previously unselected package libbabeltrace1:amd64. 2021-06-03T19:04:10.4430192Z (Reading database ... 2021-06-03T19:04:10.4430934Z (Reading database ... 5% 2021-06-03T19:04:10.4431648Z (Reading database ... 10% 2021-06-03T19:04:10.4432458Z (Reading database ... 15% 2021-06-03T19:04:10.4433050Z (Reading database ... 20% 2021-06-03T19:04:10.4433660Z (Reading database ... 25% 2021-06-03T19:04:10.4434265Z (Reading database ... 30% 2021-06-03T19:04:10.4434855Z (Reading database ... 35% 2021-06-03T19:04:10.4435463Z (Reading database ... 40% 2021-06-03T19:04:10.4436071Z (Reading database ... 45% 2021-06-03T19:04:10.4436673Z (Reading database ... 50% 2021-06-03T19:04:10.4521403Z (Reading 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libipt2 (2.0.1-1) ... 2021-06-03T19:04:10.6553049Z Selecting previously unselected package libsource-highlight-common. 2021-06-03T19:04:10.6798822Z Preparing to unpack .../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-06-03T19:04:10.6814117Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-06-03T19:04:10.7351157Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-06-03T19:04:10.7652641Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-06-03T19:04:10.7669765Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-06-03T19:04:10.8414815Z Selecting previously unselected package libsource-highlight4v5. 2021-06-03T19:04:10.8685310Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-06-03T19:04:10.8698715Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-06-03T19:04:10.9209249Z Selecting previously unselected package libxxhash0:amd64. 2021-06-03T19:04:10.9480530Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-06-03T19:04:10.9492283Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-06-03T19:04:10.9753999Z Selecting previously unselected package gdb. 2021-06-03T19:04:11.0023422Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-06-03T19:04:11.0036019Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-06-03T19:04:11.3445221Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-06-03T19:04:11.3705114Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-06-03T19:04:11.3714211Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:17.5938341Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-06-03T19:04:17.6223532Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-06-03T19:04:17.6235617Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:20.5899109Z Selecting previously unselected package rustc. 2021-06-03T19:04:20.6166776Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-06-03T19:04:20.6181766Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:20.8020787Z Selecting previously unselected package cargo. 2021-06-03T19:04:20.8290934Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-06-03T19:04:20.8304873Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-06-03T19:04:21.1496259Z Selecting previously unselected package libc6-dbg:amd64. 2021-06-03T19:04:21.1725048Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-06-03T19:04:21.1740714Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-06-03T19:04:22.3237581Z Selecting previously unselected package rust-gdb. 2021-06-03T19:04:22.3526142Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-06-03T19:04:22.3537526Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4160999Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4203270Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-06-03T19:04:22.4244453Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-06-03T19:04:22.4284371Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4321719Z Setting up libipt2 (2.0.1-1) ... 2021-06-03T19:04:22.4360017Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-06-03T19:04:22.4394658Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-06-03T19:04:22.4444622Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4479166Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-06-03T19:04:22.4516840Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-06-03T19:04:22.4567777Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4607801Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-06-03T19:04:22.4666511Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-06-03T19:04:22.4711449Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:04:22.4928273Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:04:25.4477082Z Reading package lists... 2021-06-03T19:04:25.6206727Z Building dependency tree... 2021-06-03T19:04:25.6226764Z Reading state information... 2021-06-03T19:04:25.7754490Z The following additional packages will be installed: 2021-06-03T19:04:25.7766239Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-06-03T19:04:25.7767423Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-06-03T19:04:25.7768883Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-06-03T19:04:25.7769900Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-06-03T19:04:25.7770939Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-06-03T19:04:25.7771986Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-06-03T19:04:25.7772919Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-06-03T19:04:25.7774343Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-06-03T19:04:25.7775767Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-06-03T19:04:25.7776889Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-06-03T19:04:25.7778372Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-06-03T19:04:25.7779442Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-06-03T19:04:25.7780546Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-06-03T19:04:25.7781774Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-06-03T19:04:25.7782953Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-06-03T19:04:25.7785650Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-06-03T19:04:25.7786836Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-06-03T19:04:25.7788017Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-06-03T19:04:25.7789523Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-06-03T19:04:25.7790436Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-06-03T19:04:25.7791326Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-06-03T19:04:25.7792252Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-06-03T19:04:25.7793672Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-06-03T19:04:25.7794962Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-06-03T19:04:25.7795878Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-06-03T19:04:25.7797091Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-06-03T19:04:25.7798912Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-06-03T19:04:25.7800429Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-06-03T19:04:25.7801916Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-06-03T19:04:25.7803281Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-06-03T19:04:25.7804674Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-06-03T19:04:25.7805962Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-06-03T19:04:25.7808009Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-06-03T19:04:25.7809744Z python3-cycler python3-dateutil python3-decorator python3-future 2021-06-03T19:04:25.7811295Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-06-03T19:04:25.7813108Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-06-03T19:04:25.7855164Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-06-03T19:04:25.7856326Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-06-03T19:04:25.7857421Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-06-03T19:04:25.7858907Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-06-03T19:04:25.7860151Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-06-03T19:04:25.7861444Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-06-03T19:04:25.7862564Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-06-03T19:04:25.7863854Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-06-03T19:04:25.7865328Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-06-03T19:04:25.7866466Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-06-03T19:04:25.7867560Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-06-03T19:04:25.7868781Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-06-03T19:04:25.7869800Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-06-03T19:04:25.7870406Z Suggested packages: 2021-06-03T19:04:25.7871287Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-06-03T19:04:25.7872647Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-06-03T19:04:25.7873685Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-06-03T19:04:25.7875188Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-06-03T19:04:25.7876194Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-06-03T19:04:25.7877284Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-06-03T19:04:25.7878802Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-06-03T19:04:25.7880025Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-06-03T19:04:25.7881661Z python3-gobject python3-nose python3-scipy python3-tornado 2021-06-03T19:04:25.7882835Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-06-03T19:04:25.7884515Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-06-03T19:04:25.7885982Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-06-03T19:04:25.7887148Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-06-03T19:04:25.7888196Z wpagui libengine-pkcs11-openssl 2021-06-03T19:04:25.8712179Z The following NEW packages will be installed: 2021-06-03T19:04:25.8714012Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-06-03T19:04:25.8715539Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-06-03T19:04:25.8716986Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-06-03T19:04:25.8718686Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-06-03T19:04:25.8720119Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-06-03T19:04:25.8721487Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-06-03T19:04:25.8722756Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-06-03T19:04:25.8724254Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-06-03T19:04:25.8725712Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-06-03T19:04:25.8727097Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-06-03T19:04:25.8728820Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-06-03T19:04:25.8730143Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-06-03T19:04:25.8731510Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-06-03T19:04:25.8732984Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-06-03T19:04:25.8735134Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-06-03T19:04:25.8737440Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-06-03T19:04:25.8739062Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-06-03T19:04:25.8740209Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-06-03T19:04:25.8741339Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-06-03T19:04:25.8742233Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-06-03T19:04:25.8743118Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-06-03T19:04:25.8744244Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-06-03T19:04:25.8745373Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-06-03T19:04:25.8746301Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-06-03T19:04:25.8747232Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-06-03T19:04:25.8748496Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-06-03T19:04:25.8749540Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-06-03T19:04:25.8750596Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-06-03T19:04:25.8751675Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-06-03T19:04:25.8752680Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-06-03T19:04:25.8753624Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-06-03T19:04:25.8754977Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-06-03T19:04:25.8756075Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-06-03T19:04:25.8757191Z python3-cycler python3-dateutil python3-decorator python3-future 2021-06-03T19:04:25.8758699Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-06-03T19:04:25.8759811Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-06-03T19:04:25.8760843Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-06-03T19:04:25.8761866Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-06-03T19:04:25.8762855Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-06-03T19:04:25.8764088Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-06-03T19:04:25.8765483Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-06-03T19:04:25.8766573Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-06-03T19:04:25.8767669Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-06-03T19:04:25.8769084Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-06-03T19:04:25.8770562Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-06-03T19:04:25.8771606Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-06-03T19:04:25.8772624Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-06-03T19:04:25.8774212Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-06-03T19:04:25.8775513Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-06-03T19:04:25.8977246Z 0 upgraded, 214 newly installed, 0 to remove and 36 not upgraded. 2021-06-03T19:04:25.8978670Z Need to get 183 MB of archives. 2021-06-03T19:04:25.8980064Z After this operation, 776 MB of additional disk space will be used. 2021-06-03T19:04:25.8982342Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-06-03T19:04:25.9006820Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-06-03T19:04:25.9353115Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-06-03T19:04:25.9363554Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-06-03T19:04:25.9371487Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-06-03T19:04:25.9380526Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-06-03T19:04:25.9387885Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-06-03T19:04:25.9395264Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-06-03T19:04:25.9402742Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-06-03T19:04:25.9410341Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-06-03T19:04:25.9418678Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-06-03T19:04:25.9437270Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-06-03T19:04:25.9491242Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-06-03T19:04:25.9498215Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-06-03T19:04:25.9504636Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-06-03T19:04:25.9512167Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-06-03T19:04:25.9519315Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-06-03T19:04:25.9531222Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-06-03T19:04:25.9532941Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-06-03T19:04:25.9534916Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-06-03T19:04:25.9536486Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-06-03T19:04:25.9538185Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-06-03T19:04:25.9555594Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-06-03T19:04:25.9821307Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-06-03T19:04:26.0062000Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-06-03T19:04:26.0080671Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-06-03T19:04:26.0102010Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4ubuntu0.1 [735 kB] 2021-06-03T19:04:26.0187030Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-06-03T19:04:26.0189563Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-06-03T19:04:26.0210161Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-06-03T19:04:26.0232049Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-06-03T19:04:26.0350393Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-06-03T19:04:26.0468681Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-06-03T19:04:26.0486803Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-06-03T19:04:26.0495163Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-06-03T19:04:26.0505236Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-06-03T19:04:26.1588178Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-06-03T19:04:26.1597626Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-06-03T19:04:26.1717734Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-06-03T19:04:26.1748712Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-06-03T19:04:26.1770030Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-06-03T19:04:26.1785093Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-06-03T19:04:26.1795525Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-06-03T19:04:26.1814733Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-06-03T19:04:26.1827191Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-06-03T19:04:26.1852380Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-06-03T19:04:26.1861572Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-06-03T19:04:26.1907119Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-06-03T19:04:26.1919514Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-06-03T19:04:26.1963252Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-06-03T19:04:26.1975850Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-06-03T19:04:26.1984700Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-06-03T19:04:26.1994526Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-06-03T19:04:26.2009145Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-06-03T19:04:26.2064569Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-06-03T19:04:26.2077385Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-06-03T19:04:26.2754871Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-06-03T19:04:26.2841377Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-06-03T19:04:26.2854171Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-06-03T19:04:26.2912566Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-06-03T19:04:26.2934910Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-06-03T19:04:26.2937596Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-06-03T19:04:26.2940095Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-06-03T19:04:26.2946540Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-06-03T19:04:26.2957421Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-06-03T19:04:26.2990584Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-06-03T19:04:26.3012921Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-06-03T19:04:26.3034097Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-06-03T19:04:26.3140795Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-06-03T19:04:26.3218449Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-06-03T19:04:26.3772287Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-06-03T19:04:26.3779747Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-06-03T19:04:26.3785037Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-06-03T19:04:26.3787192Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-06-03T19:04:26.3805949Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-06-03T19:04:26.3830484Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-06-03T19:04:26.3837947Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-06-03T19:04:26.4265407Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-06-03T19:04:26.4271079Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-06-03T19:04:26.4277415Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-06-03T19:04:26.4406725Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-06-03T19:04:26.4411643Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-06-03T19:04:26.4429063Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-06-03T19:04:26.4471659Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-06-03T19:04:26.4750707Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-06-03T19:04:26.4913694Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-06-03T19:04:26.4937234Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-06-03T19:04:26.4938862Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-06-03T19:04:26.4949042Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-06-03T19:04:26.5002526Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-06-03T19:04:26.5004203Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-06-03T19:04:26.5022428Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-06-03T19:04:26.5030873Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-06-03T19:04:26.5050811Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-06-03T19:04:26.5065434Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-06-03T19:04:26.5073597Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-06-03T19:04:26.5304901Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-06-03T19:04:26.5389088Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-06-03T19:04:26.5391239Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-06-03T19:04:26.5392991Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-06-03T19:04:26.5404001Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-06-03T19:04:26.5446701Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-06-03T19:04:26.5538809Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-06-03T19:04:26.5557408Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-06-03T19:04:26.5567693Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-06-03T19:04:26.5684161Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-06-03T19:04:26.5692077Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-06-03T19:04:27.1595094Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-06-03T19:04:27.1600584Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-06-03T19:04:27.1620777Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-06-03T19:04:27.1846891Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-06-03T19:04:27.2921223Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-06-03T19:04:27.2929560Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-06-03T19:04:27.2948613Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4ubuntu0.1 [620 kB] 2021-06-03T19:04:27.3048903Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-06-03T19:04:27.3055019Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-06-03T19:04:27.3547071Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.4 [789 kB] 2021-06-03T19:04:27.3690994Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-06-03T19:04:27.3715031Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-06-03T19:04:27.3718600Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-06-03T19:04:27.3725297Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-06-03T19:04:27.3766653Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-06-03T19:04:27.3793722Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-06-03T19:04:27.3795849Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-06-03T19:04:27.3798264Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-06-03T19:04:27.3824697Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-06-03T19:04:27.3834510Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-06-03T19:04:27.3845130Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-06-03T19:04:27.3865432Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-06-03T19:04:27.3867848Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-06-03T19:04:27.3877785Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-06-03T19:04:27.3892633Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-06-03T19:04:27.3927422Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-06-03T19:04:27.4130396Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-06-03T19:04:27.4161598Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-06-03T19:04:27.4169847Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-06-03T19:04:27.4190306Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-06-03T19:04:27.4303837Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-06-03T19:04:27.4331173Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-06-03T19:04:27.4370734Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-06-03T19:04:27.4382298Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-06-03T19:04:27.4409843Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-06-03T19:04:27.4423196Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-06-03T19:04:27.4432891Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-06-03T19:04:27.4452365Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-06-03T19:04:27.4549374Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-06-03T19:04:27.4553814Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-06-03T19:04:27.4556409Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-06-03T19:04:27.4660559Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-06-03T19:04:27.5129244Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-06-03T19:04:27.5135310Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-06-03T19:04:27.5220977Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-06-03T19:04:27.5254650Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-06-03T19:04:27.5268861Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-06-03T19:04:27.5339237Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-06-03T19:04:27.5341693Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-06-03T19:04:27.5789358Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-06-03T19:04:27.5901703Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-06-03T19:04:27.6053012Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-06-03T19:04:27.6574706Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-06-03T19:04:27.6628667Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-06-03T19:04:27.6664712Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-06-03T19:04:27.6675863Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-06-03T19:04:27.6752496Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-06-03T19:04:27.6762737Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-06-03T19:04:27.6793589Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-06-03T19:04:27.6802451Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-06-03T19:04:27.6913506Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-06-03T19:04:27.6968831Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-06-03T19:04:27.7636223Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-06-03T19:04:27.7644846Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-06-03T19:04:27.7662379Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-06-03T19:04:27.7673621Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-06-03T19:04:27.7684363Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-06-03T19:04:27.7693261Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-06-03T19:04:27.7742006Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-06-03T19:04:27.7749192Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-06-03T19:04:27.7764850Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-06-03T19:04:27.7773186Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-06-03T19:04:27.7788615Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-06-03T19:04:27.7800509Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-06-03T19:04:27.7812986Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-06-03T19:04:27.8427604Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-06-03T19:04:27.8444995Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-06-03T19:04:27.9616633Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-06-03T19:04:27.9626594Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-06-03T19:04:27.9628548Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-06-03T19:04:27.9677718Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-06-03T19:04:27.9685956Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-06-03T19:04:27.9708669Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.4 [363 kB] 2021-06-03T19:04:28.0847685Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-06-03T19:04:28.0993542Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-06-03T19:04:28.2083961Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-06-03T19:04:28.2120175Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-06-03T19:04:28.2136307Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-06-03T19:04:28.2641888Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-06-03T19:04:28.2688313Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-06-03T19:04:28.2702823Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-06-03T19:04:28.2714098Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-06-03T19:04:28.2728381Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-06-03T19:04:28.3156044Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-06-03T19:04:28.4561147Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.10-0ubuntu1~20.04 [104 kB] 2021-06-03T19:04:28.4600991Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-06-03T19:04:28.4700495Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-06-03T19:04:28.6142467Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-06-03T19:04:28.6577464Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-06-03T19:04:28.6606402Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-06-03T19:04:28.6615392Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-06-03T19:04:28.6667969Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-06-03T19:04:28.6681367Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-06-03T19:04:28.6809230Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-06-03T19:04:28.6948964Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-06-03T19:04:28.7023583Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-06-03T19:04:28.7072419Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-06-03T19:04:29.8142250Z Fetched 183 MB in 3s (64.7 MB/s) 2021-06-03T19:04:29.8743048Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-06-03T19:04:29.8818308Z (Reading database ... 2021-06-03T19:04:29.8819010Z (Reading database ... 5% 2021-06-03T19:04:29.8819471Z (Reading database ... 10% 2021-06-03T19:04:29.8819910Z (Reading database ... 15% 2021-06-03T19:04:29.8822185Z (Reading database ... 20% 2021-06-03T19:04:29.8822703Z (Reading database ... 25% 2021-06-03T19:04:29.8823142Z (Reading database ... 30% 2021-06-03T19:04:29.8823745Z (Reading database ... 35% 2021-06-03T19:04:29.8824351Z (Reading database ... 40% 2021-06-03T19:04:29.8824836Z (Reading database ... 45% 2021-06-03T19:04:29.8825288Z (Reading database ... 50% 2021-06-03T19:04:29.8921634Z (Reading database ... 55% 2021-06-03T19:04:29.8971029Z (Reading database ... 60% 2021-06-03T19:04:29.9038501Z (Reading database ... 65% 2021-06-03T19:04:29.9073772Z (Reading database ... 70% 2021-06-03T19:04:29.9104360Z (Reading database ... 75% 2021-06-03T19:04:29.9136589Z (Reading database ... 80% 2021-06-03T19:04:29.9461215Z (Reading database ... 85% 2021-06-03T19:04:29.9565512Z (Reading database ... 90% 2021-06-03T19:04:29.9854299Z (Reading database ... 95% 2021-06-03T19:04:29.9854819Z (Reading database ... 100% 2021-06-03T19:04:29.9855546Z (Reading database ... 245796 files and directories currently installed.) 2021-06-03T19:04:29.9954300Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-06-03T19:04:29.9984964Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-06-03T19:04:30.0376558Z Selecting previously unselected package libqt5core5a:amd64. 2021-06-03T19:04:30.0677460Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:30.0781844Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:04:30.2697174Z Selecting previously unselected package libegl-mesa0:amd64. 2021-06-03T19:04:30.2947528Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:30.2969913Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-06-03T19:04:30.3416456Z Selecting previously unselected package libegl1:amd64. 2021-06-03T19:04:30.3679758Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-06-03T19:04:30.3696041Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-06-03T19:04:30.4055333Z Selecting previously unselected package libevdev2:amd64. 2021-06-03T19:04:30.4283779Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-06-03T19:04:30.4301308Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-06-03T19:04:30.4631355Z Selecting previously unselected package libmtdev1:amd64. 2021-06-03T19:04:30.4921193Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-06-03T19:04:30.4937864Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-06-03T19:04:30.5206940Z Selecting previously unselected package libwacom-common. 2021-06-03T19:04:30.5493515Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-06-03T19:04:30.5504762Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-06-03T19:04:30.6535481Z Selecting previously unselected package libwacom2:amd64. 2021-06-03T19:04:30.6768841Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-06-03T19:04:30.6782618Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-06-03T19:04:30.7056226Z Selecting previously unselected package libinput-bin. 2021-06-03T19:04:30.7330051Z Preparing to unpack .../008-libinput-bin_1.15.5-1ubuntu0.2_amd64.deb ... 2021-06-03T19:04:30.7343952Z Unpacking libinput-bin (1.15.5-1ubuntu0.2) ... 2021-06-03T19:04:30.7702873Z Selecting previously unselected package libinput10:amd64. 2021-06-03T19:04:30.8003225Z Preparing to unpack .../009-libinput10_1.15.5-1ubuntu0.2_amd64.deb ... 2021-06-03T19:04:30.8018236Z Unpacking libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-06-03T19:04:30.8535578Z Selecting previously unselected package libqt5dbus5:amd64. 2021-06-03T19:04:30.8766953Z Preparing to unpack .../010-libqt5dbus5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:30.8782200Z Unpacking libqt5dbus5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:04:30.9335411Z Selecting previously unselected package libqt5network5:amd64. 2021-06-03T19:04:30.9566371Z Preparing to unpack .../011-libqt5network5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:30.9581732Z Unpacking libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:04:31.0576073Z Selecting previously unselected package libxcb-icccm4:amd64. 2021-06-03T19:04:31.0817698Z Preparing to unpack .../012-libxcb-icccm4_0.4.1-1.1_amd64.deb ... 2021-06-03T19:04:31.0836916Z Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... 2021-06-03T19:04:31.1106199Z Selecting previously unselected package libxcb-util1:amd64. 2021-06-03T19:04:31.1406943Z Preparing to unpack .../013-libxcb-util1_0.4.0-0ubuntu3_amd64.deb ... 2021-06-03T19:04:31.1423293Z Unpacking libxcb-util1:amd64 (0.4.0-0ubuntu3) ... 2021-06-03T19:04:31.1694580Z Selecting previously unselected package libxcb-image0:amd64. 2021-06-03T19:04:31.1983753Z Preparing to unpack .../014-libxcb-image0_0.4.0-1build1_amd64.deb ... 2021-06-03T19:04:31.1994245Z Unpacking libxcb-image0:amd64 (0.4.0-1build1) ... 2021-06-03T19:04:31.2260075Z Selecting previously unselected package libxcb-keysyms1:amd64. 2021-06-03T19:04:31.2570359Z Preparing to unpack .../015-libxcb-keysyms1_0.4.0-1build1_amd64.deb ... 2021-06-03T19:04:31.2581738Z Unpacking libxcb-keysyms1:amd64 (0.4.0-1build1) ... 2021-06-03T19:04:31.2894988Z Selecting previously unselected package libxcb-randr0:amd64. 2021-06-03T19:04:31.3093373Z Preparing to unpack .../016-libxcb-randr0_1.14-2_amd64.deb ... 2021-06-03T19:04:31.3106108Z Unpacking libxcb-randr0:amd64 (1.14-2) ... 2021-06-03T19:04:31.3362485Z Selecting previously unselected package libxcb-render-util0:amd64. 2021-06-03T19:04:31.3669145Z Preparing to unpack .../017-libxcb-render-util0_0.3.9-1build1_amd64.deb ... 2021-06-03T19:04:31.3681189Z Unpacking libxcb-render-util0:amd64 (0.3.9-1build1) ... 2021-06-03T19:04:31.3933367Z Selecting previously unselected package libxcb-xinerama0:amd64. 2021-06-03T19:04:31.4203110Z Preparing to unpack .../018-libxcb-xinerama0_1.14-2_amd64.deb ... 2021-06-03T19:04:31.4215336Z Unpacking libxcb-xinerama0:amd64 (1.14-2) ... 2021-06-03T19:04:31.4485970Z Selecting previously unselected package libxcb-xinput0:amd64. 2021-06-03T19:04:31.4770182Z Preparing to unpack .../019-libxcb-xinput0_1.14-2_amd64.deb ... 2021-06-03T19:04:31.4781223Z Unpacking libxcb-xinput0:amd64 (1.14-2) ... 2021-06-03T19:04:31.5056192Z Selecting previously unselected package libxcb-xkb1:amd64. 2021-06-03T19:04:31.5329235Z Preparing to unpack .../020-libxcb-xkb1_1.14-2_amd64.deb ... 2021-06-03T19:04:31.5341259Z Unpacking libxcb-xkb1:amd64 (1.14-2) ... 2021-06-03T19:04:31.5618508Z Selecting previously unselected package libxkbcommon-x11-0:amd64. 2021-06-03T19:04:31.5889415Z Preparing to unpack .../021-libxkbcommon-x11-0_0.10.0-1_amd64.deb ... 2021-06-03T19:04:31.5900942Z Unpacking libxkbcommon-x11-0:amd64 (0.10.0-1) ... 2021-06-03T19:04:31.6258437Z Selecting previously unselected package libqt5gui5:amd64. 2021-06-03T19:04:31.6506824Z Preparing to unpack .../022-libqt5gui5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:31.6578379Z Unpacking libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:04:31.9567318Z Selecting previously unselected package libqt5widgets5:amd64. 2021-06-03T19:04:31.9833666Z Preparing to unpack .../023-libqt5widgets5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:31.9844571Z Unpacking libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:04:32.2335707Z Selecting previously unselected package libqt5svg5:amd64. 2021-06-03T19:04:32.2585571Z Preparing to unpack .../024-libqt5svg5_5.12.8-0ubuntu1_amd64.deb ... 2021-06-03T19:04:32.2604772Z Unpacking libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:04:32.3015116Z Selecting previously unselected package liborc-0.4-0:amd64. 2021-06-03T19:04:32.3224495Z Preparing to unpack .../025-liborc-0.4-0_1%3a0.4.31-1_amd64.deb ... 2021-06-03T19:04:32.3235997Z Unpacking liborc-0.4-0:amd64 (1:0.4.31-1) ... 2021-06-03T19:04:32.3775907Z Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. 2021-06-03T19:04:32.3970854Z Preparing to unpack .../026-libgstreamer-plugins-base1.0-0_1.16.2-4ubuntu0.1_amd64.deb ... 2021-06-03T19:04:32.3988695Z Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4ubuntu0.1) ... 2021-06-03T19:04:32.4952552Z Selecting previously unselected package libhyphen0:amd64. 2021-06-03T19:04:32.5207586Z Preparing to unpack .../027-libhyphen0_2.8.8-7_amd64.deb ... 2021-06-03T19:04:32.5227595Z Unpacking libhyphen0:amd64 (2.8.8-7) ... 2021-06-03T19:04:32.5575331Z Selecting previously unselected package libqt5positioning5:amd64. 2021-06-03T19:04:32.5784983Z Preparing to unpack .../028-libqt5positioning5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-06-03T19:04:32.5798779Z Unpacking libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 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Did you mean "=="? 2021-06-03T19:05:10.3675637Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-06-03T19:05:10.3677290Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:10.3679201Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-06-03T19:05:10.4131103Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:10.4132789Z if direction is "increasing": 2021-06-03T19:05:10.4134763Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:10.4135652Z elif direction is "decreasing": 2021-06-03T19:05:10.4326454Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:10.4328251Z if direction is "increasing": 2021-06-03T19:05:10.4329907Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:10.4331568Z elif direction is "decreasing": 2021-06-03T19:05:11.4097395Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:11.4100329Z if props["offset_coordinates"] is "data": 2021-06-03T19:05:11.4102611Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-06-03T19:05:11.4103810Z if props["coordinates"] is not "data": 2021-06-03T19:05:12.2456058Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-06-03T19:05:12.8708385Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-06-03T19:05:12.8711184Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-06-03T19:05:12.8713469Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-06-03T19:05:14.1009113Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-06-03T19:05:14.1052311Z First installation detected... 2021-06-03T19:05:14.1054694Z Checking NSS setup... 2021-06-03T19:05:14.1103600Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-06-03T19:05:14.1172168Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:14.1226556Z Setting up python3-owslib (0.19.1-1) ... 2021-06-03T19:05:14.4187104Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-06-03T19:05:14.4236932Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-06-03T19:05:14.4276961Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-06-03T19:05:14.4320165Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-06-03T19:05:14.4383155Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-06-03T19:05:14.4428123Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-06-03T19:05:14.4471401Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-06-03T19:05:14.4505895Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-06-03T19:05:14.4549688Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-06-03T19:05:14.6553346Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-06-03T19:05:14.6606827Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-06-03T19:05:14.6643628Z Setting up grass-core (7.8.2-1build3) ... 2021-06-03T19:05:15.0259719Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:15.0261528Z if value is '': 2021-06-03T19:05:15.1298257Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:15.1299792Z if do_profiling is "True" or do_profiling is "1": 2021-06-03T19:05:15.1301214Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:15.1302311Z if do_profiling is "True" or do_profiling is "1": 2021-06-03T19:05:15.1304169Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-06-03T19:05:15.1305252Z if driver_string is not None and driver_string is not "": 2021-06-03T19:05:15.1796668Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:15.1798633Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-06-03T19:05:15.1799820Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-06-03T19:05:15.1800871Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-06-03T19:05:15.2507781Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-06-03T19:05:15.2546516Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.2644560Z Setting up libqmi-proxy (1.24.8-1) ... 2021-06-03T19:05:15.2679343Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.2723379Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.2950125Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:15.2987798Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.3038295Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.3077402Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:15.3120208Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.3154691Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-06-03T19:05:15.4167601Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:15.4202254Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.4265112Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:15.4305656Z Setting up modemmanager (1.12.8-1) ... 2021-06-03T19:05:15.5789480Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-06-03T19:05:15.5792605Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-06-03T19:05:16.1833038Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.1873310Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.1911559Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-06-03T19:05:16.1950836Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.1992192Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:16.2029303Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.2065638Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-06-03T19:05:16.2098514Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-06-03T19:05:16.2215663Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-06-03T19:05:16.2261767Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.2303758Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.2340621Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:16.2375902Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:16.2421961Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:16.2458677Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:16.2502139Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.2558718Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-06-03T19:05:16.2593800Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:16.2634282Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:16.2670895Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-06-03T19:05:16.4516633Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-06-03T19:05:16.4575130Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:16.4621758Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:16.4665785Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:51.9054795Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:51.9099126Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-06-03T19:05:51.9138955Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:51.9220409Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:51.9259210Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:51.9300102Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:51.9331862Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-06-03T19:05:51.9369108Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.0939154Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.0979046Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-06-03T19:05:52.1013303Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.1046680Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-06-03T19:05:52.1092255Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.2929636Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.2961948Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.3006197Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-06-03T19:05:52.3401153Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-06-03T19:05:52.3674147Z Processing triggers for shared-mime-info (1.15-1) ... 2021-06-03T19:05:53.4601695Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-06-03T19:05:53.4797655Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-06-03T19:05:53.5090401Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-06-03T19:05:53.5274147Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-06-03T19:05:53.6297376Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:05:53.6647314Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-06-03T19:05:53.9501883Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:06:06.8886311Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-06-03T19:06:06.9145504Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-06-03T19:06:08.9579852Z ##[group]Run adigherman/actions/get-repo-name@master 2021-06-03T19:06:08.9580455Z with: 2021-06-03T19:06:08.9581008Z github_slug: neuroconductor/neuroCombatData 2021-06-03T19:06:08.9581549Z env: 2021-06-03T19:06:08.9582154Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:08.9582629Z TIC_DEPLOY_KEY: 2021-06-03T19:06:08.9583439Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:08.9586803Z GITHUB_PAT: *** 2021-06-03T19:06:08.9587682Z COVERALLS_TOKEN: *** 2021-06-03T19:06:08.9588301Z continue-on-error: false 2021-06-03T19:06:08.9588805Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:08.9591078Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:08.9592019Z TZ: UTC 2021-06-03T19:06:08.9592619Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:08.9593090Z NOT_CRAN: true 2021-06-03T19:06:08.9593489Z ##[endgroup] 2021-06-03T19:06:09.0000736Z repo slug is: neuroconductor/neuroCombatData 2021-06-03T19:06:09.0110076Z ##[group]Run adigherman/actions/get-repo-version@master 2021-06-03T19:06:09.0110690Z env: 2021-06-03T19:06:09.0111126Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:09.0111604Z TIC_DEPLOY_KEY: 2021-06-03T19:06:09.0112413Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:09.0113901Z GITHUB_PAT: *** 2021-06-03T19:06:09.0114730Z COVERALLS_TOKEN: *** 2021-06-03T19:06:09.0115246Z continue-on-error: false 2021-06-03T19:06:09.0115729Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:09.0116239Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:09.0116692Z TZ: UTC 2021-06-03T19:06:09.0117102Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:09.0117542Z NOT_CRAN: true 2021-06-03T19:06:09.0117924Z ##[endgroup] 2021-06-03T19:06:09.2513757Z ##[group]Run adigherman/actions/get-release-asset@master 2021-06-03T19:06:09.2514552Z with: 2021-06-03T19:06:09.2515068Z repo_name: neuroCombatData 2021-06-03T19:06:09.2516273Z repo_version: 0.99.0 2021-06-03T19:06:09.2516698Z runner_os: Linux 2021-06-03T19:06:09.2517111Z R_version: 4.0 2021-06-03T19:06:09.2517473Z env: 2021-06-03T19:06:09.2519027Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:09.2519547Z TIC_DEPLOY_KEY: 2021-06-03T19:06:09.2520399Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:09.2521815Z GITHUB_PAT: *** 2021-06-03T19:06:09.2522821Z COVERALLS_TOKEN: *** 2021-06-03T19:06:09.2523323Z continue-on-error: false 2021-06-03T19:06:09.2523823Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:09.2524333Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:09.2524786Z TZ: UTC 2021-06-03T19:06:09.2525193Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:09.2525612Z NOT_CRAN: true 2021-06-03T19:06:09.2526021Z ##[endgroup] 2021-06-03T19:06:09.3401833Z Package: neuroCombatData 2021-06-03T19:06:09.3416169Z Version: 0.99.0 2021-06-03T19:06:09.3416714Z OS: Linux 2021-06-03T19:06:09.3495109Z ##[group]Run install.packages('remotes') 2021-06-03T19:06:09.3496173Z install.packages('remotes') 2021-06-03T19:06:09.3496940Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-06-03T19:06:09.3497871Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-06-03T19:06:09.3505596Z shell: /usr/local/bin/Rscript {0} 2021-06-03T19:06:09.3506012Z env: 2021-06-03T19:06:09.3506454Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:09.3506908Z TIC_DEPLOY_KEY: 2021-06-03T19:06:09.3507695Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:09.3508970Z GITHUB_PAT: *** 2021-06-03T19:06:09.3509728Z COVERALLS_TOKEN: *** 2021-06-03T19:06:09.3510364Z continue-on-error: false 2021-06-03T19:06:09.3510822Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:09.3511282Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:09.3511722Z TZ: UTC 2021-06-03T19:06:09.3512098Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:09.3512481Z NOT_CRAN: true 2021-06-03T19:06:09.3512847Z ##[endgroup] 2021-06-03T19:06:10.1749270Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:06:10.1750162Z (as ‘lib’ is unspecified) 2021-06-03T19:06:26.9523441Z trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.4.0.tar.gz' 2021-06-03T19:06:26.9887457Z Content type 'application/x-gzip' length 149836 bytes (146 KB) 2021-06-03T19:06:27.0005102Z ================================================== 2021-06-03T19:06:27.0006795Z downloaded 146 KB 2021-06-03T19:06:27.0007346Z 2021-06-03T19:06:27.3777201Z * installing *source* package ‘remotes’ ... 2021-06-03T19:06:27.3830384Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-06-03T19:06:27.3831596Z ** using staged installation 2021-06-03T19:06:27.4042880Z ** R 2021-06-03T19:06:27.4270908Z ** inst 2021-06-03T19:06:27.4285653Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:06:29.9504503Z ** help 2021-06-03T19:06:30.0453535Z *** installing help indices 2021-06-03T19:06:30.1226533Z ** building package indices 2021-06-03T19:06:30.3976130Z ** installing vignettes 2021-06-03T19:06:30.4046883Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:06:30.6071244Z ** testing if installed package can be loaded from final location 2021-06-03T19:06:30.8743269Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:06:30.8771110Z * DONE (remotes) 2021-06-03T19:06:30.8848716Z 2021-06-03T19:06:30.8849635Z The downloaded source packages are in 2021-06-03T19:06:30.8851345Z ‘/tmp/RtmpCcBndQ/downloaded_packages’ 2021-06-03T19:06:49.7149360Z ##[group]Run actions/cache@v1 2021-06-03T19:06:49.7149788Z with: 2021-06-03T19:06:49.7150167Z path: /home/runner/work/_temp/Library 2021-06-03T19:06:49.7152939Z key: Linux-9062e2676fcbc8371c382d1bc4b5d886f4e4bdffdd9e7160e92f55e288306f12-1-a24bc9cec886c977811e814257733e8081abbf1645fe08d0fd89ba2575ebc7cd 2021-06-03T19:06:49.7157265Z restore-keys: Linux-9062e2676fcbc8371c382d1bc4b5d886f4e4bdffdd9e7160e92f55e288306f12-1- 2021-06-03T19:06:49.7158539Z env: 2021-06-03T19:06:49.7158984Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:49.7159611Z TIC_DEPLOY_KEY: 2021-06-03T19:06:49.7160358Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:49.7162776Z GITHUB_PAT: *** 2021-06-03T19:06:49.7163627Z COVERALLS_TOKEN: *** 2021-06-03T19:06:49.7164134Z continue-on-error: false 2021-06-03T19:06:49.7164817Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:49.7165442Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:49.7165910Z TZ: UTC 2021-06-03T19:06:49.7166423Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:49.7166802Z NOT_CRAN: true 2021-06-03T19:06:49.7167128Z ##[endgroup] 2021-06-03T19:06:49.7657870Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-06-03T19:06:49.7734929Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-06-03T19:06:49.7736231Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-06-03T19:06:49.7736923Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-06-03T19:06:49.7737487Z sudo -s eval "$sysreqs" 2021-06-03T19:06:49.7779481Z shell: /usr/bin/bash -e {0} 2021-06-03T19:06:49.7779855Z env: 2021-06-03T19:06:49.7780275Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:06:49.7780700Z TIC_DEPLOY_KEY: 2021-06-03T19:06:49.7781434Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:06:49.7782648Z GITHUB_PAT: *** 2021-06-03T19:06:49.7783363Z COVERALLS_TOKEN: *** 2021-06-03T19:06:49.7783823Z continue-on-error: false 2021-06-03T19:06:49.7784247Z VDIFFR_RUN_TESTS: 2021-06-03T19:06:49.7784698Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:06:49.7785127Z TZ: UTC 2021-06-03T19:06:49.7785505Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:06:49.7785879Z NOT_CRAN: true 2021-06-03T19:06:49.7786322Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-06-03T19:06:49.7786768Z ##[endgroup] 2021-06-03T19:06:49.9865945Z Using github PAT from envvar GITHUB_PAT 2021-06-03T19:06:50.6850110Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-06-03T19:07:08.5578004Z rprojroot (NA -> 2.0.2) [CRAN] 2021-06-03T19:07:08.5582111Z crayon (NA -> 1.4.1) [CRAN] 2021-06-03T19:07:08.5582674Z R6 (NA -> 2.5.0) [CRAN] 2021-06-03T19:07:08.5583217Z desc (NA -> 1.3.0) [CRAN] 2021-06-03T19:07:08.5583784Z debugme (NA -> 1.1.0) [CRAN] 2021-06-03T19:07:08.5605717Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-06-03T19:07:08.5619136Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:07:08.5619871Z (as ‘lib’ is unspecified) 2021-06-03T19:07:25.2340968Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-06-03T19:07:25.7661334Z Content type 'binary/octet-stream' length 97084 bytes (94 KB) 2021-06-03T19:07:25.7746101Z ================================================== 2021-06-03T19:07:25.7747066Z downloaded 94 KB 2021-06-03T19:07:25.7747716Z 2021-06-03T19:07:25.7784577Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-06-03T19:07:26.3188682Z Content type 'binary/octet-stream' length 137207 bytes (133 KB) 2021-06-03T19:07:26.3300302Z ================================================== 2021-06-03T19:07:26.3301402Z downloaded 133 KB 2021-06-03T19:07:26.3301920Z 2021-06-03T19:07:26.3337437Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-06-03T19:07:26.8941764Z Content type 'binary/octet-stream' length 81940 bytes (80 KB) 2021-06-03T19:07:26.9004341Z ================================================== 2021-06-03T19:07:26.9005308Z downloaded 80 KB 2021-06-03T19:07:26.9005603Z 2021-06-03T19:07:26.9047744Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-06-03T19:07:27.1734484Z Content type 'binary/octet-stream' length 525226 bytes (512 KB) 2021-06-03T19:07:27.1957360Z ================================================== 2021-06-03T19:07:27.1958088Z downloaded 512 KB 2021-06-03T19:07:27.1958675Z 2021-06-03T19:07:27.1997755Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-06-03T19:07:27.9046189Z Content type 'binary/octet-stream' length 1015329 bytes (991 KB) 2021-06-03T19:07:27.9338294Z ================================================== 2021-06-03T19:07:27.9339175Z downloaded 991 KB 2021-06-03T19:07:27.9339571Z 2021-06-03T19:07:28.1952746Z * installing *binary* package ‘rprojroot’ ... 2021-06-03T19:07:28.1993399Z * DONE (rprojroot) 2021-06-03T19:07:28.4087200Z * installing *binary* package ‘crayon’ ... 2021-06-03T19:07:28.4130117Z * DONE (crayon) 2021-06-03T19:07:28.6317074Z * installing *binary* package ‘R6’ ... 2021-06-03T19:07:28.6356400Z * DONE (R6) 2021-06-03T19:07:28.9133200Z * installing *binary* package ‘desc’ ... 2021-06-03T19:07:28.9180807Z * DONE (desc) 2021-06-03T19:07:29.1797024Z * installing *binary* package ‘debugme’ ... 2021-06-03T19:07:29.1843495Z * DONE (debugme) 2021-06-03T19:07:29.1895214Z 2021-06-03T19:07:29.1896092Z The downloaded source packages are in 2021-06-03T19:07:29.1897263Z ‘/tmp/RtmpTfwmAy/downloaded_packages’ 2021-06-03T19:07:29.1908819Z Running `R CMD build`... 2021-06-03T19:07:29.4275701Z * checking for file ‘/tmp/RtmpTfwmAy/remotes6560800a722/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-06-03T19:07:29.4277403Z * preparing ‘sysreqs’: 2021-06-03T19:07:29.4278983Z * checking DESCRIPTION meta-information ... OK 2021-06-03T19:07:29.4280174Z * checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:07:29.4281115Z * checking for empty or unneeded directories 2021-06-03T19:07:29.4282119Z Omitted ‘LazyData’ from DESCRIPTION 2021-06-03T19:07:29.4283071Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-06-03T19:07:29.4285007Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:07:29.4286061Z (as ‘lib’ is unspecified) 2021-06-03T19:07:29.6425873Z * installing *source* package ‘sysreqs’ ... 2021-06-03T19:07:29.6428075Z ** using staged installation 2021-06-03T19:07:29.6585473Z ** R 2021-06-03T19:07:29.6623505Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:07:30.0689967Z ** help 2021-06-03T19:07:30.0927475Z *** installing help indices 2021-06-03T19:07:30.1109674Z ** building package indices 2021-06-03T19:07:30.3132563Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:07:30.5135157Z ** testing if installed package can be loaded from final location 2021-06-03T19:07:30.7349896Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:07:30.7356836Z * DONE (sysreqs) 2021-06-03T19:07:48.7607699Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-06-03T19:07:48.7609906Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-06-03T19:07:48.7611544Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-06-03T19:07:48.8197525Z Hit:4 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-06-03T19:07:48.8630959Z Hit:5 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-06-03T19:07:48.9885844Z Hit:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-06-03T19:07:49.1469419Z Hit:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-06-03T19:07:50.5170741Z Reading package lists... 2021-06-03T19:07:50.5992959Z Reading package lists... 2021-06-03T19:07:50.7776117Z Building dependency tree... 2021-06-03T19:07:50.7803831Z Reading state information... 2021-06-03T19:07:50.9453506Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-06-03T19:07:50.9456307Z libicu-dev set to manually installed. 2021-06-03T19:07:50.9458217Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.4). 2021-06-03T19:07:50.9459200Z pandoc is already the newest version (2.7.3-1). 2021-06-03T19:07:50.9460374Z The following additional packages will be installed: 2021-06-03T19:07:50.9461823Z libbibutils6 libghc-pandoc-citeproc-data 2021-06-03T19:07:50.9462918Z Suggested packages: 2021-06-03T19:07:50.9464062Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-06-03T19:07:51.0032243Z The following NEW packages will be installed: 2021-06-03T19:07:51.0035021Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-06-03T19:07:51.0036293Z pandoc-citeproc 2021-06-03T19:07:51.0272871Z 0 upgraded, 4 newly installed, 0 to remove and 36 not upgraded. 2021-06-03T19:07:51.0273814Z Need to get 13.7 MB of archives. 2021-06-03T19:07:51.0274893Z After this operation, 109 MB of additional disk space will be used. 2021-06-03T19:07:51.0276911Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-06-03T19:07:51.0346424Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-06-03T19:07:51.0384166Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-06-03T19:07:51.0391137Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-06-03T19:07:51.6793119Z Fetched 13.7 MB in 0s (84.2 MB/s) 2021-06-03T19:07:51.7284613Z Selecting previously unselected package libbibutils6. 2021-06-03T19:07:51.7385048Z (Reading database ... 2021-06-03T19:07:51.7385589Z (Reading database ... 5% 2021-06-03T19:07:51.7386124Z (Reading database ... 10% 2021-06-03T19:07:51.7386626Z (Reading database ... 15% 2021-06-03T19:07:51.7387127Z (Reading database ... 20% 2021-06-03T19:07:51.7387612Z (Reading database ... 25% 2021-06-03T19:07:51.7388216Z (Reading database ... 30% 2021-06-03T19:07:51.7388892Z (Reading database ... 35% 2021-06-03T19:07:51.7389421Z (Reading database ... 40% 2021-06-03T19:07:51.7389939Z (Reading database ... 45% 2021-06-03T19:07:51.7403246Z (Reading database ... 50% 2021-06-03T19:07:51.7506156Z (Reading database ... 55% 2021-06-03T19:07:51.7551841Z (Reading database ... 60% 2021-06-03T19:07:51.7626464Z (Reading database ... 65% 2021-06-03T19:07:51.7666472Z (Reading database ... 70% 2021-06-03T19:07:51.7704881Z (Reading database ... 75% 2021-06-03T19:07:51.8093396Z (Reading database ... 80% 2021-06-03T19:07:51.8166761Z (Reading database ... 85% 2021-06-03T19:07:51.8302248Z (Reading database ... 90% 2021-06-03T19:07:51.8702134Z (Reading database ... 95% 2021-06-03T19:07:51.8702740Z (Reading database ... 100% 2021-06-03T19:07:51.8703476Z (Reading database ... 261007 files and directories currently installed.) 2021-06-03T19:07:51.8863206Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-06-03T19:07:51.8892065Z Unpacking libbibutils6 (6.2-1) ... 2021-06-03T19:07:51.9776490Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-06-03T19:07:52.0014460Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-06-03T19:07:52.0031211Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-06-03T19:07:52.0617859Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-06-03T19:07:52.0930692Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-06-03T19:07:52.0944490Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-06-03T19:07:52.1336138Z Selecting previously unselected package pandoc-citeproc. 2021-06-03T19:07:52.1618957Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-06-03T19:07:52.1633476Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-06-03T19:07:52.1685953Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-06-03T19:07:53.6233428Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-06-03T19:07:53.6270776Z Setting up libbibutils6 (6.2-1) ... 2021-06-03T19:07:53.6314704Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-06-03T19:07:53.6349584Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-06-03T19:07:53.6389787Z Processing triggers for man-db (2.9.1-1) ... 2021-06-03T19:07:57.0536402Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-06-03T19:07:59.0416160Z ##[group]Run remotes::install_github("ropensci/tic") 2021-06-03T19:07:59.0416827Z remotes::install_github("ropensci/tic") 2021-06-03T19:07:59.0417391Z remotes::install_github("muschellij2/ghtravis") 2021-06-03T19:07:59.0417987Z remotes::install_github("muschellij2/aghast") 2021-06-03T19:07:59.0418485Z remotes::install_cran("covr") 2021-06-03T19:07:59.0425662Z shell: /usr/local/bin/Rscript {0} 2021-06-03T19:07:59.0426027Z env: 2021-06-03T19:07:59.0426439Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:07:59.0426880Z TIC_DEPLOY_KEY: 2021-06-03T19:07:59.0427577Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:07:59.0429518Z GITHUB_PAT: *** 2021-06-03T19:07:59.0430330Z COVERALLS_TOKEN: *** 2021-06-03T19:07:59.0430747Z continue-on-error: false 2021-06-03T19:07:59.0431182Z VDIFFR_RUN_TESTS: 2021-06-03T19:07:59.0431580Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:07:59.0431997Z TZ: UTC 2021-06-03T19:07:59.0432335Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:07:59.0432693Z NOT_CRAN: true 2021-06-03T19:07:59.0433003Z ##[endgroup] 2021-06-03T19:07:59.2603311Z Using github PAT from envvar GITHUB_PAT 2021-06-03T19:07:59.8256161Z Downloading GitHub repo ropensci/tic@HEAD 2021-06-03T19:08:18.8166184Z rlang (NA -> 0.4.11) [CRAN] 2021-06-03T19:08:18.8167676Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-06-03T19:08:18.8168610Z glue (NA -> 1.4.2 ) [CRAN] 2021-06-03T19:08:18.8169491Z sys (NA -> 3.4 ) [CRAN] 2021-06-03T19:08:18.8170765Z askpass (NA -> 1.1 ) [CRAN] 2021-06-03T19:08:18.8171698Z openssl (NA -> 1.4.4 ) [CRAN] 2021-06-03T19:08:18.8172627Z mime (NA -> 0.10 ) [CRAN] 2021-06-03T19:08:18.8173529Z curl (NA -> 4.3.1 ) [CRAN] 2021-06-03T19:08:18.8175111Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-06-03T19:08:18.8176026Z ini (NA -> 0.3.1 ) [CRAN] 2021-06-03T19:08:18.8177094Z httr (NA -> 1.4.2 ) [CRAN] 2021-06-03T19:08:18.8178240Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-06-03T19:08:18.8179175Z cli (NA -> 2.5.0 ) [CRAN] 2021-06-03T19:08:18.8180277Z zip (NA -> 2.2.0 ) [CRAN] 2021-06-03T19:08:18.8182124Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-06-03T19:08:18.8183637Z credentials (NA -> 1.3.0 ) [CRAN] 2021-06-03T19:08:18.8184709Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-06-03T19:08:18.8185610Z yaml (NA -> 2.2.1 ) [CRAN] 2021-06-03T19:08:18.8186471Z withr (NA -> 2.4.2 ) [CRAN] 2021-06-03T19:08:18.8187519Z whisker (NA -> 0.4 ) [CRAN] 2021-06-03T19:08:18.8188669Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-06-03T19:08:18.8189467Z purrr (NA -> 0.3.4 ) [CRAN] 2021-06-03T19:08:18.8190508Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-06-03T19:08:18.8191504Z gh (NA -> 1.3.0 ) [CRAN] 2021-06-03T19:08:18.8192255Z gert (NA -> 1.3.0 ) [CRAN] 2021-06-03T19:08:18.8193016Z fs (NA -> 1.5.0 ) [CRAN] 2021-06-03T19:08:18.8193935Z clipr (NA -> 0.7.1 ) [CRAN] 2021-06-03T19:08:18.8194686Z cachem (NA -> 1.0.5 ) [CRAN] 2021-06-03T19:08:18.8195465Z usethis (NA -> 2.0.1 ) [CRAN] 2021-06-03T19:08:18.8196237Z memoise (NA -> 2.0.0 ) [CRAN] 2021-06-03T19:08:18.8196983Z git2r (NA -> 0.28.0) [CRAN] 2021-06-03T19:08:18.8198784Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-06-03T19:08:18.8214443Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:08:18.8216019Z (as ‘lib’ is unspecified) 2021-06-03T19:08:36.1656987Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-06-03T19:08:36.7858255Z Content type 'binary/octet-stream' length 1395145 bytes (1.3 MB) 2021-06-03T19:08:36.8160528Z ================================================== 2021-06-03T19:08:36.8162896Z downloaded 1.3 MB 2021-06-03T19:08:36.8164202Z 2021-06-03T19:08:36.8205410Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-06-03T19:08:37.3521579Z Content type 'binary/octet-stream' length 232460 bytes (227 KB) 2021-06-03T19:08:37.3687413Z ================================================== 2021-06-03T19:08:37.3688356Z downloaded 227 KB 2021-06-03T19:08:37.3689180Z 2021-06-03T19:08:37.3732083Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-06-03T19:08:37.9376854Z Content type 'binary/octet-stream' length 144550 bytes (141 KB) 2021-06-03T19:08:37.9488496Z ================================================== 2021-06-03T19:08:37.9489355Z downloaded 141 KB 2021-06-03T19:08:37.9490208Z 2021-06-03T19:08:37.9522805Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-06-03T19:08:38.2294908Z Content type 'binary/octet-stream' length 54926 bytes (53 KB) 2021-06-03T19:08:38.2344839Z ================================================== 2021-06-03T19:08:38.2345603Z downloaded 53 KB 2021-06-03T19:08:38.2346077Z 2021-06-03T19:08:38.2391474Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-06-03T19:08:39.2211547Z Content type 'binary/octet-stream' length 23680 bytes (23 KB) 2021-06-03T19:08:39.2214826Z ================================================== 2021-06-03T19:08:39.2215714Z downloaded 23 KB 2021-06-03T19:08:39.2215990Z 2021-06-03T19:08:39.2217649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-06-03T19:08:39.2569986Z Content type 'binary/octet-stream' length 1492423 bytes (1.4 MB) 2021-06-03T19:08:39.2879709Z ================================================== 2021-06-03T19:08:39.2880847Z downloaded 1.4 MB 2021-06-03T19:08:39.2881322Z 2021-06-03T19:08:39.2916176Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-06-03T19:08:39.8304114Z Content type 'binary/octet-stream' length 37651 bytes (36 KB) 2021-06-03T19:08:39.8321988Z ================================================== 2021-06-03T19:08:39.8322847Z downloaded 36 KB 2021-06-03T19:08:39.8323240Z 2021-06-03T19:08:39.8361506Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-06-03T19:08:40.1055247Z Content type 'binary/octet-stream' length 905527 bytes (884 KB) 2021-06-03T19:08:40.1311392Z ================================================== 2021-06-03T19:08:40.1312703Z downloaded 884 KB 2021-06-03T19:08:40.1313343Z 2021-06-03T19:08:40.1352296Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-06-03T19:08:40.8712111Z Content type 'binary/octet-stream' length 536214 bytes (523 KB) 2021-06-03T19:08:40.8945169Z ================================================== 2021-06-03T19:08:40.8945652Z downloaded 523 KB 2021-06-03T19:08:40.8945928Z 2021-06-03T19:08:40.8989750Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-06-03T19:08:42.2913274Z Content type 'binary/octet-stream' length 13018 bytes (12 KB) 2021-06-03T19:08:42.2915561Z ================================================== 2021-06-03T19:08:42.2915969Z downloaded 12 KB 2021-06-03T19:08:42.2916222Z 2021-06-03T19:08:42.2965160Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-06-03T19:08:42.7256435Z Content type 'binary/octet-stream' length 501372 bytes (489 KB) 2021-06-03T19:08:42.7468651Z ================================================== 2021-06-03T19:08:42.7469352Z downloaded 489 KB 2021-06-03T19:08:42.7469621Z 2021-06-03T19:08:42.7506379Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-06-03T19:08:43.4832147Z Content type 'binary/octet-stream' length 93295 bytes (91 KB) 2021-06-03T19:08:43.4915875Z ================================================== 2021-06-03T19:08:43.4916381Z downloaded 91 KB 2021-06-03T19:08:43.4916631Z 2021-06-03T19:08:43.4956194Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-06-03T19:08:43.7704348Z Content type 'binary/octet-stream' length 519945 bytes (507 KB) 2021-06-03T19:08:43.7917534Z ================================================== 2021-06-03T19:08:43.7918370Z downloaded 507 KB 2021-06-03T19:08:43.7919209Z 2021-06-03T19:08:43.8036408Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.2.0.tar.gz' 2021-06-03T19:08:44.0836890Z Content type 'binary/octet-stream' length 636985 bytes (622 KB) 2021-06-03T19:08:44.1065522Z ================================================== 2021-06-03T19:08:44.1066482Z downloaded 622 KB 2021-06-03T19:08:44.1066988Z 2021-06-03T19:08:44.1112187Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-06-03T19:08:44.3813103Z Content type 'binary/octet-stream' length 273399 bytes (266 KB) 2021-06-03T19:08:44.3972602Z ================================================== 2021-06-03T19:08:44.3973287Z downloaded 266 KB 2021-06-03T19:08:44.3973928Z 2021-06-03T19:08:44.4012021Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-06-03T19:08:45.0070431Z Content type 'binary/octet-stream' length 171705 bytes (167 KB) 2021-06-03T19:08:45.0197868Z ================================================== 2021-06-03T19:08:45.0198782Z downloaded 167 KB 2021-06-03T19:08:45.0199269Z 2021-06-03T19:08:45.0239995Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-06-03T19:08:45.6570868Z Content type 'binary/octet-stream' length 241070 bytes (235 KB) 2021-06-03T19:08:45.6741534Z ================================================== 2021-06-03T19:08:45.6742076Z downloaded 235 KB 2021-06-03T19:08:45.6742354Z 2021-06-03T19:08:45.6786529Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-06-03T19:08:46.2963736Z Content type 'binary/octet-stream' length 283697 bytes (277 KB) 2021-06-03T19:08:46.3128538Z ================================================== 2021-06-03T19:08:46.3129015Z downloaded 277 KB 2021-06-03T19:08:46.3129436Z 2021-06-03T19:08:46.3171374Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-06-03T19:08:47.1186871Z Content type 'binary/octet-stream' length 206158 bytes (201 KB) 2021-06-03T19:08:47.1327785Z ================================================== 2021-06-03T19:08:47.1328837Z downloaded 201 KB 2021-06-03T19:08:47.1329956Z 2021-06-03T19:08:47.1373504Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-06-03T19:08:47.4085005Z Content type 'binary/octet-stream' length 65826 bytes (64 KB) 2021-06-03T19:08:47.4139737Z ================================================== 2021-06-03T19:08:47.4141355Z downloaded 64 KB 2021-06-03T19:08:47.4141854Z 2021-06-03T19:08:47.4177857Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-06-03T19:08:48.4404235Z Content type 'binary/octet-stream' length 47325 bytes (46 KB) 2021-06-03T19:08:48.4456129Z ================================================== 2021-06-03T19:08:48.4456794Z downloaded 46 KB 2021-06-03T19:08:48.4457315Z 2021-06-03T19:08:48.4501986Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-06-03T19:08:48.9970846Z Content type 'binary/octet-stream' length 427374 bytes (417 KB) 2021-06-03T19:08:49.0193985Z ================================================== 2021-06-03T19:08:49.0194447Z downloaded 417 KB 2021-06-03T19:08:49.0194712Z 2021-06-03T19:08:49.0232047Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-06-03T19:08:49.2962537Z Content type 'binary/octet-stream' length 93556 bytes (91 KB) 2021-06-03T19:08:49.3033062Z ================================================== 2021-06-03T19:08:49.3033857Z downloaded 91 KB 2021-06-03T19:08:49.3034673Z 2021-06-03T19:08:49.3081774Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-06-03T19:08:50.2620042Z Content type 'binary/octet-stream' length 136720 bytes (133 KB) 2021-06-03T19:08:50.2689748Z ================================================== 2021-06-03T19:08:50.2690252Z downloaded 133 KB 2021-06-03T19:08:50.2690488Z 2021-06-03T19:08:50.2735383Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-06-03T19:08:50.8072386Z Content type 'binary/octet-stream' length 278807 bytes (272 KB) 2021-06-03T19:08:50.8232684Z ================================================== 2021-06-03T19:08:50.8233662Z downloaded 272 KB 2021-06-03T19:08:50.8233956Z 2021-06-03T19:08:50.8280044Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-06-03T19:08:51.3836084Z Content type 'binary/octet-stream' length 754591 bytes (736 KB) 2021-06-03T19:08:51.4096495Z ================================================== 2021-06-03T19:08:51.4097015Z downloaded 736 KB 2021-06-03T19:08:51.4097288Z 2021-06-03T19:08:51.4139878Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-06-03T19:08:51.9494443Z Content type 'binary/octet-stream' length 47147 bytes (46 KB) 2021-06-03T19:08:51.9545424Z ================================================== 2021-06-03T19:08:51.9545878Z downloaded 46 KB 2021-06-03T19:08:51.9546136Z 2021-06-03T19:08:51.9580738Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-06-03T19:08:52.3663752Z Content type 'binary/octet-stream' length 68425 bytes (66 KB) 2021-06-03T19:08:52.3717351Z ================================================== 2021-06-03T19:08:52.3717855Z downloaded 66 KB 2021-06-03T19:08:52.3718286Z 2021-06-03T19:08:52.3762649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-06-03T19:08:52.8233953Z Content type 'binary/octet-stream' length 704079 bytes (687 KB) 2021-06-03T19:08:52.8517593Z ================================================== 2021-06-03T19:08:52.8518616Z downloaded 687 KB 2021-06-03T19:08:52.8519897Z 2021-06-03T19:08:52.8562803Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-06-03T19:08:53.2469440Z Content type 'binary/octet-stream' length 47070 bytes (45 KB) 2021-06-03T19:08:53.2470854Z ================================================== 2021-06-03T19:08:53.2471966Z downloaded 45 KB 2021-06-03T19:08:53.2472782Z 2021-06-03T19:08:53.2513941Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-06-03T19:08:53.8001901Z Content type 'binary/octet-stream' length 616131 bytes (601 KB) 2021-06-03T19:08:53.8234515Z ================================================== 2021-06-03T19:08:53.8235085Z downloaded 601 KB 2021-06-03T19:08:53.8235397Z 2021-06-03T19:08:54.1684902Z * installing *binary* package ‘rlang’ ... 2021-06-03T19:08:54.1750017Z * DONE (rlang) 2021-06-03T19:08:54.4147977Z * installing *binary* package ‘magrittr’ ... 2021-06-03T19:08:54.4194248Z * DONE (magrittr) 2021-06-03T19:08:54.6628968Z * installing *binary* package ‘glue’ ... 2021-06-03T19:08:54.6672015Z * DONE (glue) 2021-06-03T19:08:54.8897609Z * installing *binary* package ‘sys’ ... 2021-06-03T19:08:54.8936660Z * DONE (sys) 2021-06-03T19:08:55.1139111Z * installing *binary* package ‘mime’ ... 2021-06-03T19:08:55.1175744Z * DONE (mime) 2021-06-03T19:08:55.4740030Z * installing *binary* package ‘curl’ ... 2021-06-03T19:08:55.4811611Z * DONE (curl) 2021-06-03T19:08:55.8062360Z * installing *binary* package ‘jsonlite’ ... 2021-06-03T19:08:55.8130200Z * DONE (jsonlite) 2021-06-03T19:08:56.0456146Z * installing *binary* package ‘ini’ ... 2021-06-03T19:08:56.0501356Z * DONE (ini) 2021-06-03T19:08:56.3096302Z * installing *binary* package ‘gitcreds’ ... 2021-06-03T19:08:56.3134065Z * DONE (gitcreds) 2021-06-03T19:08:56.6257643Z * installing *binary* package ‘zip’ ... 2021-06-03T19:08:56.6313795Z * DONE (zip) 2021-06-03T19:08:56.8826782Z * installing *binary* package ‘rstudioapi’ ... 2021-06-03T19:08:56.8886972Z * DONE (rstudioapi) 2021-06-03T19:08:57.1743443Z * installing *binary* package ‘fastmap’ ... 2021-06-03T19:08:57.1788021Z * DONE (fastmap) 2021-06-03T19:08:57.4541307Z * installing *binary* package ‘yaml’ ... 2021-06-03T19:08:57.4594765Z * DONE (yaml) 2021-06-03T19:08:57.7105147Z * installing *binary* package ‘withr’ ... 2021-06-03T19:08:57.7156449Z * DONE (withr) 2021-06-03T19:08:57.9523515Z * installing *binary* package ‘whisker’ ... 2021-06-03T19:08:57.9570332Z * DONE (whisker) 2021-06-03T19:08:58.1734451Z * installing *binary* package ‘rappdirs’ ... 2021-06-03T19:08:58.1773031Z * DONE (rappdirs) 2021-06-03T19:08:58.4876492Z * installing *binary* package ‘fs’ ... 2021-06-03T19:08:58.4933546Z * DONE (fs) 2021-06-03T19:08:58.7189250Z * installing *binary* package ‘clipr’ ... 2021-06-03T19:08:58.7240212Z * DONE (clipr) 2021-06-03T19:08:58.9949182Z * installing *binary* package ‘git2r’ ... 2021-06-03T19:08:58.9999650Z * DONE (git2r) 2021-06-03T19:08:59.2302665Z * installing *binary* package ‘askpass’ ... 2021-06-03T19:08:59.2339095Z * DONE (askpass) 2021-06-03T19:08:59.4999391Z * installing *binary* package ‘cli’ ... 2021-06-03T19:08:59.5047484Z * DONE (cli) 2021-06-03T19:08:59.7761333Z * installing *binary* package ‘purrr’ ... 2021-06-03T19:08:59.7808311Z * DONE (purrr) 2021-06-03T19:09:00.0286565Z * installing *binary* package ‘lifecycle’ ... 2021-06-03T19:09:00.0335635Z * DONE (lifecycle) 2021-06-03T19:09:00.2613318Z * installing *binary* package ‘cachem’ ... 2021-06-03T19:09:00.2653158Z * DONE (cachem) 2021-06-03T19:09:00.6672193Z * installing *binary* package ‘openssl’ ... 2021-06-03T19:09:00.6747489Z * DONE (openssl) 2021-06-03T19:09:00.9058433Z * installing *binary* package ‘memoise’ ... 2021-06-03T19:09:00.9100047Z * DONE (memoise) 2021-06-03T19:09:01.2166405Z * installing *binary* package ‘httr’ ... 2021-06-03T19:09:01.2224050Z * DONE (httr) 2021-06-03T19:09:01.4538585Z * installing *binary* package ‘credentials’ ... 2021-06-03T19:09:01.4581204Z * DONE (credentials) 2021-06-03T19:09:01.6759863Z * installing *binary* package ‘gh’ ... 2021-06-03T19:09:01.6799115Z * DONE (gh) 2021-06-03T19:09:01.9484957Z * installing *binary* package ‘gert’ ... 2021-06-03T19:09:01.9529811Z * DONE (gert) 2021-06-03T19:09:02.2746649Z * installing *binary* package ‘usethis’ ... 2021-06-03T19:09:02.2818561Z * DONE (usethis) 2021-06-03T19:09:02.2885042Z 2021-06-03T19:09:02.2885917Z The downloaded source packages are in 2021-06-03T19:09:02.2887087Z ‘/tmp/Rtmp5vSsPX/downloaded_packages’ 2021-06-03T19:09:02.2897633Z Running `R CMD build`... 2021-06-03T19:09:04.5546378Z * checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a7dba371e/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-06-03T19:09:04.5547931Z * preparing ‘tic’: 2021-06-03T19:09:04.5548981Z * checking DESCRIPTION meta-information ... OK 2021-06-03T19:09:04.5550003Z * installing the package to process help pages 2021-06-03T19:09:04.5551182Z * checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:09:04.5552161Z * checking for empty or unneeded directories 2021-06-03T19:09:04.5553160Z Removed empty directory ‘tic/.circleci’ 2021-06-03T19:09:04.5554486Z Removed empty directory ‘tic/pkgdown’ 2021-06-03T19:09:04.5555417Z * building ‘tic_0.10.0.tar.gz’ 2021-06-03T19:09:04.5557316Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:09:04.5558292Z (as ‘lib’ is unspecified) 2021-06-03T19:09:05.7288167Z * installing *source* package ‘tic’ ... 2021-06-03T19:09:05.7289184Z ** using staged installation 2021-06-03T19:09:05.7290015Z ** R 2021-06-03T19:09:05.7290560Z ** inst 2021-06-03T19:09:05.7291226Z ** preparing package for lazy loading 2021-06-03T19:09:05.7292279Z ** help 2021-06-03T19:09:05.7293194Z *** installing help indices 2021-06-03T19:09:05.7294194Z *** copying figures 2021-06-03T19:09:05.7294752Z ** building package indices 2021-06-03T19:09:05.9787652Z ** installing vignettes 2021-06-03T19:09:05.9852466Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:09:06.2837611Z ** testing if installed package can be loaded from final location 2021-06-03T19:09:06.6161840Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:09:06.6193911Z * DONE (tic) 2021-06-03T19:09:06.6333244Z Using github PAT from envvar GITHUB_PAT 2021-06-03T19:09:06.8472255Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-06-03T19:09:07.9210659Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-06-03T19:09:07.9211438Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-06-03T19:09:07.9212061Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-06-03T19:09:07.9212679Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-06-03T19:09:07.9213273Z pillar (NA -> 1.6.1 ) [CRAN] 2021-06-03T19:09:07.9214087Z tibble (NA -> 3.1.2 ) [CRAN] 2021-06-03T19:09:07.9214700Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-06-03T19:09:07.9215294Z fansi (NA -> 0.5.0 ) [CRAN] 2021-06-03T19:09:07.9215878Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-06-03T19:09:07.9216449Z waldo (NA -> 0.2.5 ) [CRAN] 2021-06-03T19:09:07.9217195Z ps (NA -> 1.6.0 ) [CRAN] 2021-06-03T19:09:07.9217752Z processx (NA -> 3.5.2 ) [CRAN] 2021-06-03T19:09:07.9218337Z praise (NA -> 1.0.0 ) [CRAN] 2021-06-03T19:09:07.9218910Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-06-03T19:09:07.9219482Z evaluate (NA -> 0.14 ) [CRAN] 2021-06-03T19:09:07.9220075Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-06-03T19:09:07.9220661Z digest (NA -> 0.6.27 ) [CRAN] 2021-06-03T19:09:07.9221214Z callr (NA -> 3.7.0 ) [CRAN] 2021-06-03T19:09:07.9221769Z brio (NA -> 1.1.2 ) [CRAN] 2021-06-03T19:09:07.9222305Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-06-03T19:09:07.9222857Z xfun (NA -> 0.23 ) [CRAN] 2021-06-03T19:09:07.9223422Z markdown (NA -> 1.1 ) [CRAN] 2021-06-03T19:09:07.9223982Z highr (NA -> 0.9 ) [CRAN] 2021-06-03T19:09:07.9224550Z stringr (NA -> 1.4.0 ) [CRAN] 2021-06-03T19:09:07.9225121Z stringi (NA -> 1.6.2 ) [CRAN] 2021-06-03T19:09:07.9225688Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-06-03T19:09:07.9226240Z knitr (NA -> 1.33 ) [CRAN] 2021-06-03T19:09:07.9226798Z commonmark (NA -> 1.7 ) [CRAN] 2021-06-03T19:09:07.9227381Z brew (NA -> 1.0-6 ) [CRAN] 2021-06-03T19:09:07.9227940Z xopen (NA -> 1.0.0 ) [CRAN] 2021-06-03T19:09:07.9228520Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-06-03T19:09:07.9229328Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-06-03T19:09:07.9231855Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-06-03T19:09:07.9232529Z testthat (NA -> 3.0.2 ) [CRAN] 2021-06-03T19:09:07.9233308Z rversions (NA -> 2.1.1 ) [CRAN] 2021-06-03T19:09:07.9233900Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-06-03T19:09:07.9234505Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-06-03T19:09:07.9235115Z devtools (NA -> 2.4.1 ) [CRAN] 2021-06-03T19:09:07.9242818Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-06-03T19:09:07.9249026Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:09:07.9249922Z (as ‘lib’ is unspecified) 2021-06-03T19:09:24.2069062Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-06-03T19:09:24.5993093Z Content type 'binary/octet-stream' length 237664 bytes (232 KB) 2021-06-03T19:09:24.6158281Z ================================================== 2021-06-03T19:09:24.6159160Z downloaded 232 KB 2021-06-03T19:09:24.6159640Z 2021-06-03T19:09:24.6197749Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-06-03T19:09:25.0534906Z Content type 'binary/octet-stream' length 1621042 bytes (1.5 MB) 2021-06-03T19:09:25.0840667Z ================================================== 2021-06-03T19:09:25.0841585Z downloaded 1.5 MB 2021-06-03T19:09:25.0842397Z 2021-06-03T19:09:25.0875218Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-06-03T19:09:25.4751354Z Content type 'binary/octet-stream' length 17554 bytes (17 KB) 2021-06-03T19:09:25.4753280Z ================================================== 2021-06-03T19:09:25.4754271Z downloaded 17 KB 2021-06-03T19:09:25.4754721Z 2021-06-03T19:09:25.4784130Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-06-03T19:09:26.0108140Z Content type 'binary/octet-stream' length 1011310 bytes (987 KB) 2021-06-03T19:09:26.0376150Z ================================================== 2021-06-03T19:09:26.0377481Z downloaded 987 KB 2021-06-03T19:09:26.0378251Z 2021-06-03T19:09:26.0425727Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-06-03T19:09:26.8790054Z Content type 'binary/octet-stream' length 812232 bytes (793 KB) 2021-06-03T19:09:26.9044236Z ================================================== 2021-06-03T19:09:26.9045038Z downloaded 793 KB 2021-06-03T19:09:26.9045313Z 2021-06-03T19:09:26.9086535Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-06-03T19:09:27.1816583Z Content type 'binary/octet-stream' length 43984 bytes (42 KB) 2021-06-03T19:09:27.1867181Z ================================================== 2021-06-03T19:09:27.1867666Z downloaded 42 KB 2021-06-03T19:09:27.1867932Z 2021-06-03T19:09:27.1909509Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.5.0.tar.gz' 2021-06-03T19:09:27.7323483Z Content type 'binary/octet-stream' length 281168 bytes (274 KB) 2021-06-03T19:09:27.7503078Z ================================================== 2021-06-03T19:09:27.7504748Z downloaded 274 KB 2021-06-03T19:09:27.7506785Z 2021-06-03T19:09:27.7547308Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-06-03T19:09:28.2998884Z Content type 'binary/octet-stream' length 1003508 bytes (979 KB) 2021-06-03T19:09:28.3276206Z ================================================== 2021-06-03T19:09:28.3276725Z downloaded 979 KB 2021-06-03T19:09:28.3277152Z 2021-06-03T19:09:28.3313052Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-06-03T19:09:28.6026582Z Content type 'binary/octet-stream' length 69493 bytes (67 KB) 2021-06-03T19:09:28.6088317Z ================================================== 2021-06-03T19:09:28.6089250Z downloaded 67 KB 2021-06-03T19:09:28.6089969Z 2021-06-03T19:09:28.6127065Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-06-03T19:09:29.0520819Z Content type 'binary/octet-stream' length 363109 bytes (354 KB) 2021-06-03T19:09:29.0762581Z ================================================== 2021-06-03T19:09:29.0763705Z downloaded 354 KB 2021-06-03T19:09:29.0764252Z 2021-06-03T19:09:29.0799886Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-06-03T19:09:29.4791992Z Content type 'binary/octet-stream' length 423282 bytes (413 KB) 2021-06-03T19:09:29.4999485Z ================================================== 2021-06-03T19:09:29.5000008Z downloaded 413 KB 2021-06-03T19:09:29.5000296Z 2021-06-03T19:09:29.5047629Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-06-03T19:09:30.0424006Z Content type 'binary/octet-stream' length 15999 bytes (15 KB) 2021-06-03T19:09:30.0425728Z ================================================== 2021-06-03T19:09:30.0428172Z downloaded 15 KB 2021-06-03T19:09:30.0428732Z 2021-06-03T19:09:30.0509660Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-06-03T19:09:30.3219058Z Content type 'binary/octet-stream' length 150404 bytes (146 KB) 2021-06-03T19:09:30.3332531Z ================================================== 2021-06-03T19:09:30.3333360Z downloaded 146 KB 2021-06-03T19:09:30.3334086Z 2021-06-03T19:09:30.3372666Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-06-03T19:09:30.8756991Z Content type 'binary/octet-stream' length 74183 bytes (72 KB) 2021-06-03T19:09:30.8816849Z ================================================== 2021-06-03T19:09:30.8817360Z downloaded 72 KB 2021-06-03T19:09:30.8817649Z 2021-06-03T19:09:30.8961805Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-06-03T19:09:31.3796506Z Content type 'binary/octet-stream' length 40293 bytes (39 KB) 2021-06-03T19:09:31.3834088Z ================================================== 2021-06-03T19:09:31.3834594Z downloaded 39 KB 2021-06-03T19:09:31.3835021Z 2021-06-03T19:09:31.3873024Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-06-03T19:09:32.2043883Z Content type 'binary/octet-stream' length 357387 bytes (349 KB) 2021-06-03T19:09:32.2233915Z ================================================== 2021-06-03T19:09:32.2234914Z downloaded 349 KB 2021-06-03T19:09:32.2235667Z 2021-06-03T19:09:32.2277461Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-06-03T19:09:32.6207740Z Content type 'binary/octet-stream' length 436191 bytes (425 KB) 2021-06-03T19:09:32.6427035Z ================================================== 2021-06-03T19:09:32.6427514Z downloaded 425 KB 2021-06-03T19:09:32.6427783Z 2021-06-03T19:09:32.6473552Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-06-03T19:09:33.1811724Z Content type 'binary/octet-stream' length 42530 bytes (41 KB) 2021-06-03T19:09:33.1863016Z ================================================== 2021-06-03T19:09:33.1863495Z downloaded 41 KB 2021-06-03T19:09:33.1863763Z 2021-06-03T19:09:33.1900160Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-06-03T19:09:33.7233789Z Content type 'binary/octet-stream' length 617914 bytes (603 KB) 2021-06-03T19:09:33.7460485Z ================================================== 2021-06-03T19:09:33.7461152Z downloaded 603 KB 2021-06-03T19:09:33.7461432Z 2021-06-03T19:09:33.7503524Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-06-03T19:09:34.3321104Z Content type 'binary/octet-stream' length 331309 bytes (323 KB) 2021-06-03T19:09:34.3502711Z ================================================== 2021-06-03T19:09:34.3503212Z downloaded 323 KB 2021-06-03T19:09:34.3503713Z 2021-06-03T19:09:34.3545273Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-06-03T19:09:34.5279326Z Content type 'binary/octet-stream' length 230462 bytes (225 KB) 2021-06-03T19:09:34.5436822Z ================================================== 2021-06-03T19:09:34.5437314Z downloaded 225 KB 2021-06-03T19:09:34.5437558Z 2021-06-03T19:09:34.5475605Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/highr_0.9.tar.gz' 2021-06-03T19:09:34.8417498Z Content type 'binary/octet-stream' length 38854 bytes (37 KB) 2021-06-03T19:09:34.8432821Z ================================================== 2021-06-03T19:09:34.8433950Z downloaded 37 KB 2021-06-03T19:09:34.8434212Z 2021-06-03T19:09:34.8477700Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-06-03T19:09:35.3859939Z Content type 'binary/octet-stream' length 204523 bytes (199 KB) 2021-06-03T19:09:35.4003236Z ================================================== 2021-06-03T19:09:35.4004538Z downloaded 199 KB 2021-06-03T19:09:35.4005072Z 2021-06-03T19:09:35.4040903Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.2.tar.gz' 2021-06-03T19:09:35.6756200Z Content type 'binary/octet-stream' length 2944002 bytes (2.8 MB) 2021-06-03T19:09:35.7161002Z ================================================== 2021-06-03T19:09:35.7161865Z downloaded 2.8 MB 2021-06-03T19:09:35.7162494Z 2021-06-03T19:09:35.7194791Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-06-03T19:09:36.2626675Z Content type 'binary/octet-stream' length 4153785 bytes (4.0 MB) 2021-06-03T19:09:36.4217808Z ================================================== 2021-06-03T19:09:36.4220155Z downloaded 4.0 MB 2021-06-03T19:09:36.4221613Z 2021-06-03T19:09:36.4255308Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-06-03T19:09:36.6969604Z Content type 'binary/octet-stream' length 1400044 bytes (1.3 MB) 2021-06-03T19:09:36.7255165Z ================================================== 2021-06-03T19:09:36.7255867Z downloaded 1.3 MB 2021-06-03T19:09:36.7256153Z 2021-06-03T19:09:36.7295724Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-06-03T19:09:37.1323065Z Content type 'binary/octet-stream' length 491519 bytes (479 KB) 2021-06-03T19:09:37.1535967Z ================================================== 2021-06-03T19:09:37.1537007Z downloaded 479 KB 2021-06-03T19:09:37.1537528Z 2021-06-03T19:09:37.1591745Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-06-03T19:09:37.4293119Z Content type 'binary/octet-stream' length 109751 bytes (107 KB) 2021-06-03T19:09:37.4392175Z ================================================== 2021-06-03T19:09:37.4392664Z downloaded 107 KB 2021-06-03T19:09:37.4392974Z 2021-06-03T19:09:37.4431753Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-06-03T19:09:37.8291636Z Content type 'binary/octet-stream' length 22104 bytes (21 KB) 2021-06-03T19:09:37.8296003Z ================================================== 2021-06-03T19:09:37.8296438Z downloaded 21 KB 2021-06-03T19:09:37.8296710Z 2021-06-03T19:09:37.8340053Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-06-03T19:09:38.2583544Z Content type 'binary/octet-stream' length 44271 bytes (43 KB) 2021-06-03T19:09:38.2634063Z ================================================== 2021-06-03T19:09:38.2634531Z downloaded 43 KB 2021-06-03T19:09:38.2634797Z 2021-06-03T19:09:38.2684910Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-06-03T19:09:38.6603436Z Content type 'binary/octet-stream' length 34357 bytes (33 KB) 2021-06-03T19:09:38.6608602Z ================================================== 2021-06-03T19:09:38.6609413Z downloaded 33 KB 2021-06-03T19:09:38.6609677Z 2021-06-03T19:09:38.6646895Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-06-03T19:09:39.1811722Z Content type 'binary/octet-stream' length 140417 bytes (137 KB) 2021-06-03T19:09:39.1882935Z ================================================== 2021-06-03T19:09:39.1884246Z downloaded 137 KB 2021-06-03T19:09:39.1884936Z 2021-06-03T19:09:39.1927354Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz' 2021-06-03T19:09:40.5981798Z Content type 'binary/octet-stream' length 3551345 bytes (3.4 MB) 2021-06-03T19:09:40.6451136Z ================================================== 2021-06-03T19:09:40.6451620Z downloaded 3.4 MB 2021-06-03T19:09:40.6451933Z 2021-06-03T19:09:40.6495831Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.1.1.tar.gz' 2021-06-03T19:09:40.8181969Z Content type 'binary/octet-stream' length 64148 bytes (62 KB) 2021-06-03T19:09:40.8236785Z ================================================== 2021-06-03T19:09:40.8237476Z downloaded 62 KB 2021-06-03T19:09:40.8238112Z 2021-06-03T19:09:40.8275811Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-06-03T19:09:41.0969540Z Content type 'binary/octet-stream' length 1374258 bytes (1.3 MB) 2021-06-03T19:09:41.1295661Z ================================================== 2021-06-03T19:09:41.1296161Z downloaded 1.3 MB 2021-06-03T19:09:41.1296433Z 2021-06-03T19:09:41.1333231Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-06-03T19:09:41.4143745Z Content type 'binary/octet-stream' length 132329 bytes (129 KB) 2021-06-03T19:09:41.4260644Z ================================================== 2021-06-03T19:09:41.4261185Z downloaded 129 KB 2021-06-03T19:09:41.4261506Z 2021-06-03T19:09:41.4306583Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-06-03T19:09:41.5990933Z Content type 'binary/octet-stream' length 394833 bytes (385 KB) 2021-06-03T19:09:41.6182223Z ================================================== 2021-06-03T19:09:41.6182704Z downloaded 385 KB 2021-06-03T19:09:41.6182956Z 2021-06-03T19:09:41.8633744Z * installing *binary* package ‘utf8’ ... 2021-06-03T19:09:41.8679780Z * DONE (utf8) 2021-06-03T19:09:42.0898570Z * installing *binary* package ‘pkgconfig’ ... 2021-06-03T19:09:42.0943323Z * DONE (pkgconfig) 2021-06-03T19:09:42.3521147Z * installing *binary* package ‘fansi’ ... 2021-06-03T19:09:42.3565143Z * DONE (fansi) 2021-06-03T19:09:42.6591637Z * installing *binary* package ‘diffobj’ ... 2021-06-03T19:09:42.6645488Z * DONE (diffobj) 2021-06-03T19:09:42.9231328Z * installing *binary* package ‘ps’ ... 2021-06-03T19:09:42.9283575Z * DONE (ps) 2021-06-03T19:09:43.1679162Z * installing *binary* package ‘praise’ ... 2021-06-03T19:09:43.1719215Z * DONE (praise) 2021-06-03T19:09:43.3951335Z * installing *binary* package ‘pkgload’ ... 2021-06-03T19:09:43.3987982Z * DONE (pkgload) 2021-06-03T19:09:43.6102628Z * installing *binary* package ‘evaluate’ ... 2021-06-03T19:09:43.6143113Z * DONE (evaluate) 2021-06-03T19:09:43.8437117Z * installing *binary* package ‘ellipsis’ ... 2021-06-03T19:09:43.8485201Z * DONE (ellipsis) 2021-06-03T19:09:44.1332815Z * installing *binary* package ‘digest’ ... 2021-06-03T19:09:44.1388899Z * DONE (digest) 2021-06-03T19:09:44.3634531Z * installing *binary* package ‘brio’ ... 2021-06-03T19:09:44.3671195Z * DONE (brio) 2021-06-03T19:09:44.6716178Z * installing *binary* package ‘xml2’ ... 2021-06-03T19:09:44.6775300Z * DONE (xml2) 2021-06-03T19:09:44.9290199Z * installing *binary* package ‘xfun’ ... 2021-06-03T19:09:44.9335538Z * DONE (xfun) 2021-06-03T19:09:45.4869567Z * installing *binary* package ‘stringi’ ... 2021-06-03T19:09:45.4972657Z * DONE (stringi) 2021-06-03T19:09:47.0032182Z * installing *binary* package ‘Rcpp’ ... 2021-06-03T19:09:47.0449492Z * DONE (Rcpp) 2021-06-03T19:09:47.3640308Z * installing *binary* package ‘commonmark’ ... 2021-06-03T19:09:47.3694362Z * DONE (commonmark) 2021-06-03T19:09:47.6414033Z * installing *binary* package ‘brew’ ... 2021-06-03T19:09:47.6460698Z * DONE (brew) 2021-06-03T19:09:47.8524255Z * installing *binary* package ‘sessioninfo’ ... 2021-06-03T19:09:47.8558318Z * DONE (sessioninfo) 2021-06-03T19:09:48.0684289Z * installing *binary* package ‘prettyunits’ ... 2021-06-03T19:09:48.0718807Z * DONE (prettyunits) 2021-06-03T19:09:48.4640159Z * installing *binary* package ‘vctrs’ ... 2021-06-03T19:09:48.4717137Z * DONE (vctrs) 2021-06-03T19:09:48.7462497Z * installing *binary* package ‘processx’ ... 2021-06-03T19:09:48.7511968Z * DONE (processx) 2021-06-03T19:09:49.0250807Z * installing *binary* package ‘markdown’ ... 2021-06-03T19:09:49.0300890Z * DONE (markdown) 2021-06-03T19:09:49.2648648Z * installing *binary* package ‘highr’ ... 2021-06-03T19:09:49.2687380Z * DONE (highr) 2021-06-03T19:09:49.5106124Z * installing *binary* package ‘stringr’ ... 2021-06-03T19:09:49.5150492Z * DONE (stringr) 2021-06-03T19:09:49.7630769Z * installing *binary* package ‘rversions’ ... 2021-06-03T19:09:49.7668482Z * DONE (rversions) 2021-06-03T19:09:50.0856220Z * installing *binary* package ‘pillar’ ... 2021-06-03T19:09:50.0916980Z * DONE (pillar) 2021-06-03T19:09:50.3320609Z * installing *binary* package ‘callr’ ... 2021-06-03T19:09:50.3368150Z * DONE (callr) 2021-06-03T19:09:50.7557941Z * installing *binary* package ‘knitr’ ... 2021-06-03T19:09:50.7676627Z * DONE (knitr) 2021-06-03T19:09:50.9967997Z * installing *binary* package ‘xopen’ ... 2021-06-03T19:09:51.0009800Z * DONE (xopen) 2021-06-03T19:09:51.3526086Z * installing *binary* package ‘tibble’ ... 2021-06-03T19:09:51.3587542Z * DONE (tibble) 2021-06-03T19:09:51.5931012Z * installing *binary* package ‘pkgbuild’ ... 2021-06-03T19:09:51.5965098Z * DONE (pkgbuild) 2021-06-03T19:09:51.9949728Z * installing *binary* package ‘roxygen2’ ... 2021-06-03T19:09:52.0039609Z * DONE (roxygen2) 2021-06-03T19:09:52.2261727Z * installing *binary* package ‘rematch2’ ... 2021-06-03T19:09:52.2302365Z * DONE (rematch2) 2021-06-03T19:09:52.4527429Z * installing *binary* package ‘rcmdcheck’ ... 2021-06-03T19:09:52.4568717Z * DONE (rcmdcheck) 2021-06-03T19:09:52.6828454Z * installing *binary* package ‘waldo’ ... 2021-06-03T19:09:52.6865303Z * DONE (waldo) 2021-06-03T19:09:53.4087065Z * installing *binary* package ‘testthat’ ... 2021-06-03T19:09:53.4229834Z * DONE (testthat) 2021-06-03T19:09:53.6720850Z * installing *binary* package ‘devtools’ ... 2021-06-03T19:09:53.6764199Z * DONE (devtools) 2021-06-03T19:09:53.6824927Z 2021-06-03T19:09:53.6825805Z The downloaded source packages are in 2021-06-03T19:09:53.6826993Z ‘/tmp/Rtmp5vSsPX/downloaded_packages’ 2021-06-03T19:09:53.7653226Z Downloading GitHub repo muschellij2/desc@HEAD 2021-06-03T19:09:54.6846278Z 2021-06-03T19:09:54.9904937Z 2021-06-03T19:09:54.9921317Z checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a3f75319f/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-06-03T19:09:54.9979759Z 2021-06-03T19:09:54.9981301Z ✔ checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a3f75319f/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-06-03T19:09:55.0041257Z 2021-06-03T19:09:55.0051078Z 2021-06-03T19:09:55.0052119Z ─ preparing ‘desc’: 2021-06-03T19:09:55.0058149Z 2021-06-03T19:09:55.0058828Z 2021-06-03T19:09:55.0167792Z checking DESCRIPTION meta-information ... 2021-06-03T19:09:55.0191960Z 2021-06-03T19:09:55.0193140Z ✔ checking DESCRIPTION meta-information 2021-06-03T19:09:55.0950242Z 2021-06-03T19:09:55.1116300Z 2021-06-03T19:09:55.1118855Z ─ checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:09:55.1128334Z 2021-06-03T19:09:55.1154043Z 2021-06-03T19:09:55.1156168Z ─ checking for empty or unneeded directories 2021-06-03T19:09:55.1160372Z Omitted ‘LazyData’ from DESCRIPTION 2021-06-03T19:09:55.1187091Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-06-03T19:09:55.2353877Z 2021-06-03T19:09:55.2356431Z 2021-06-03T19:09:55.2357645Z 2021-06-03T19:09:55.2457855Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:09:55.2459212Z (as ‘lib’ is unspecified) 2021-06-03T19:09:55.5751501Z * installing *source* package ‘desc’ ... 2021-06-03T19:09:55.5815304Z ** using staged installation 2021-06-03T19:09:55.5989922Z ** R 2021-06-03T19:09:55.6138133Z ** inst 2021-06-03T19:09:55.6154943Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:09:57.5571740Z ** help 2021-06-03T19:09:57.7077970Z *** installing help indices 2021-06-03T19:09:57.8069723Z ** building package indices 2021-06-03T19:09:58.1068362Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:09:58.2882179Z ** testing if installed package can be loaded from final location 2021-06-03T19:09:58.5096138Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:09:58.5109447Z * DONE (desc) 2021-06-03T19:09:58.7157877Z 2021-06-03T19:09:58.7158895Z 2021-06-03T19:09:58.7176059Z checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a4fe91d08/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-06-03T19:09:58.7194305Z 2021-06-03T19:09:58.7196071Z ✔ checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a4fe91d08/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-06-03T19:09:58.7334247Z 2021-06-03T19:09:58.7334981Z 2021-06-03T19:09:58.7336038Z ─ preparing ‘ghtravis’: 2021-06-03T19:09:58.7336761Z 2021-06-03T19:09:58.7337263Z 2021-06-03T19:09:58.7398666Z checking DESCRIPTION meta-information ... 2021-06-03T19:09:58.7429101Z 2021-06-03T19:09:58.7431038Z ✔ checking DESCRIPTION meta-information 2021-06-03T19:09:58.7806156Z 2021-06-03T19:09:58.7836964Z 2021-06-03T19:09:58.7839456Z ─ checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:09:58.7852061Z 2021-06-03T19:09:58.7879440Z 2021-06-03T19:09:58.7881551Z ─ checking for empty or unneeded directories 2021-06-03T19:09:58.7885032Z Omitted ‘LazyData’ from DESCRIPTION 2021-06-03T19:09:58.7965384Z 2021-06-03T19:09:58.7996646Z 2021-06-03T19:09:58.7998498Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-06-03T19:09:58.8238981Z 2021-06-03T19:09:58.8241459Z 2021-06-03T19:09:58.8242669Z 2021-06-03T19:09:58.8649334Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:09:58.8650425Z (as ‘lib’ is unspecified) 2021-06-03T19:09:59.1065580Z * installing *source* package ‘ghtravis’ ... 2021-06-03T19:09:59.1067778Z ** using staged installation 2021-06-03T19:09:59.1243714Z ** R 2021-06-03T19:09:59.1351476Z ** inst 2021-06-03T19:09:59.1361244Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:10:00.4953697Z ** help 2021-06-03T19:10:00.5622825Z *** installing help indices 2021-06-03T19:10:00.6149713Z ** building package indices 2021-06-03T19:10:00.8637571Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:10:01.6527485Z ** testing if installed package can be loaded from final location 2021-06-03T19:10:02.4783631Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:10:02.4793288Z * DONE (ghtravis) 2021-06-03T19:10:02.4887545Z Using github PAT from envvar GITHUB_PAT 2021-06-03T19:10:02.7162765Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-06-03T19:10:04.0207655Z 2021-06-03T19:10:04.0209690Z tidyselect (NA -> 1.1.1) [CRAN] 2021-06-03T19:10:04.0210506Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-06-03T19:10:04.0212080Z generics (NA -> 0.1.0) [CRAN] 2021-06-03T19:10:04.0212720Z cpp11 (NA -> 0.2.7) [CRAN] 2021-06-03T19:10:04.0213449Z dplyr (NA -> 1.0.6) [CRAN] 2021-06-03T19:10:04.0214454Z tidyr (NA -> 1.1.3) [CRAN] 2021-06-03T19:10:04.0224321Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:10:04.0225437Z (as ‘lib’ is unspecified) 2021-06-03T19:10:20.5952365Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-06-03T19:10:22.0012897Z Content type 'binary/octet-stream' length 198868 bytes (194 KB) 2021-06-03T19:10:22.0150714Z ================================================== 2021-06-03T19:10:22.0151410Z downloaded 194 KB 2021-06-03T19:10:22.0151838Z 2021-06-03T19:10:22.0196712Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-06-03T19:10:22.4160580Z Content type 'binary/octet-stream' length 68868 bytes (67 KB) 2021-06-03T19:10:22.4162375Z ================================================== 2021-06-03T19:10:22.4163191Z downloaded 67 KB 2021-06-03T19:10:22.4163651Z 2021-06-03T19:10:22.4201421Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-06-03T19:10:22.8152736Z Content type 'binary/octet-stream' length 195847 bytes (191 KB) 2021-06-03T19:10:22.8271311Z ================================================== 2021-06-03T19:10:22.8272310Z downloaded 191 KB 2021-06-03T19:10:22.8272832Z 2021-06-03T19:10:22.8310683Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-06-03T19:10:24.7493073Z Content type 'binary/octet-stream' length 1245501 bytes (1.2 MB) 2021-06-03T19:10:24.7494054Z ================================================== 2021-06-03T19:10:24.7494816Z downloaded 1.2 MB 2021-06-03T19:10:24.7495078Z 2021-06-03T19:10:24.7496319Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-06-03T19:10:24.8575961Z Content type 'binary/octet-stream' length 1083669 bytes (1.0 MB) 2021-06-03T19:10:24.8848624Z ================================================== 2021-06-03T19:10:24.8849451Z downloaded 1.0 MB 2021-06-03T19:10:24.8850495Z 2021-06-03T19:10:25.1233212Z * installing *binary* package ‘tidyselect’ ... 2021-06-03T19:10:25.1281654Z * DONE (tidyselect) 2021-06-03T19:10:25.3400448Z * installing *binary* package ‘generics’ ... 2021-06-03T19:10:25.3441047Z * DONE (generics) 2021-06-03T19:10:25.6189225Z * installing *binary* package ‘cpp11’ ... 2021-06-03T19:10:25.6242330Z * DONE (cpp11) 2021-06-03T19:10:25.9676894Z * installing *binary* package ‘dplyr’ ... 2021-06-03T19:10:25.9756238Z * DONE (dplyr) 2021-06-03T19:10:26.3405473Z * installing *binary* package ‘tidyr’ ... 2021-06-03T19:10:26.3471542Z * DONE (tidyr) 2021-06-03T19:10:26.3536627Z 2021-06-03T19:10:26.3538372Z The downloaded source packages are in 2021-06-03T19:10:26.3539509Z ‘/tmp/Rtmp5vSsPX/downloaded_packages’ 2021-06-03T19:10:26.5387925Z 2021-06-03T19:10:26.5392043Z checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a5ee455cd/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-06-03T19:10:26.5393454Z 2021-06-03T19:10:26.5400133Z checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a5ee455cd/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-06-03T19:10:26.5439870Z 2021-06-03T19:10:26.5441662Z ✔ checking for file ‘/tmp/Rtmp5vSsPX/remotes6d0a5ee455cd/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-06-03T19:10:26.5553873Z 2021-06-03T19:10:26.5554487Z 2021-06-03T19:10:26.5556109Z ─ preparing ‘aghast’: 2021-06-03T19:10:26.5556887Z 2021-06-03T19:10:26.5557529Z 2021-06-03T19:10:26.5645844Z checking DESCRIPTION meta-information ... 2021-06-03T19:10:26.5676297Z 2021-06-03T19:10:26.5677582Z ✔ checking DESCRIPTION meta-information 2021-06-03T19:10:26.5975680Z 2021-06-03T19:10:26.6003758Z 2021-06-03T19:10:26.6005616Z ─ checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:10:26.6012698Z 2021-06-03T19:10:26.6038873Z 2021-06-03T19:10:26.6040045Z ─ checking for empty or unneeded directories 2021-06-03T19:10:26.6040873Z Omitted ‘LazyData’ from DESCRIPTION 2021-06-03T19:10:26.6087132Z 2021-06-03T19:10:26.6112539Z 2021-06-03T19:10:26.6113522Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-06-03T19:10:26.6223385Z 2021-06-03T19:10:26.6224340Z 2021-06-03T19:10:26.6225122Z 2021-06-03T19:10:26.6302722Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:10:26.6303924Z (as ‘lib’ is unspecified) 2021-06-03T19:10:27.7501570Z * installing *source* package ‘aghast’ ... 2021-06-03T19:10:27.7509097Z ** using staged installation 2021-06-03T19:10:27.7509847Z ** R 2021-06-03T19:10:27.7510818Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:10:27.7511504Z ** help 2021-06-03T19:10:27.7512061Z *** installing help indices 2021-06-03T19:10:27.7512979Z ** building package indices 2021-06-03T19:10:27.7514093Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:10:27.8686541Z ** testing if installed package can be loaded from final location 2021-06-03T19:10:28.0572956Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:10:28.0580155Z * DONE (aghast) 2021-06-03T19:10:28.0707391Z Installing 1 packages: covr 2021-06-03T19:10:28.0728205Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:10:28.0729491Z (as ‘lib’ is unspecified) 2021-06-03T19:10:44.8200176Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-06-03T19:10:44.8201098Z 2021-06-03T19:10:44.8209660Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-06-03T19:10:45.2156480Z Content type 'binary/octet-stream' length 163844 bytes (160 KB) 2021-06-03T19:10:45.2373364Z ================================================== 2021-06-03T19:10:45.2374745Z downloaded 160 KB 2021-06-03T19:10:45.2375188Z 2021-06-03T19:10:45.2421645Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-06-03T19:10:47.2585124Z Content type 'binary/octet-stream' length 121270 bytes (118 KB) 2021-06-03T19:10:47.2586062Z ================================================== 2021-06-03T19:10:47.2586769Z downloaded 118 KB 2021-06-03T19:10:47.2587327Z 2021-06-03T19:10:47.2588599Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-06-03T19:10:47.2590042Z Content type 'binary/octet-stream' length 289076 bytes (282 KB) 2021-06-03T19:10:47.2857017Z ================================================== 2021-06-03T19:10:47.2858172Z downloaded 282 KB 2021-06-03T19:10:47.2858604Z 2021-06-03T19:10:47.5307641Z * installing *binary* package ‘lazyeval’ ... 2021-06-03T19:10:47.5348423Z * DONE (lazyeval) 2021-06-03T19:10:47.7528951Z * installing *binary* package ‘rex’ ... 2021-06-03T19:10:47.7566977Z * DONE (rex) 2021-06-03T19:10:48.0153721Z * installing *binary* package ‘covr’ ... 2021-06-03T19:10:48.0202620Z * DONE (covr) 2021-06-03T19:10:48.0272696Z 2021-06-03T19:10:48.0273533Z The downloaded source packages are in 2021-06-03T19:10:48.0274746Z ‘/tmp/Rtmp5vSsPX/downloaded_packages’ 2021-06-03T19:10:48.0442138Z 2021-06-03T19:10:48.0484341Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-06-03T19:10:48.0485035Z remotes::install_deps(dependencies = TRUE) 2021-06-03T19:10:48.0485569Z remotes::install_cran("rcmdcheck") 2021-06-03T19:10:48.0486070Z remotes::install_cran("markdown") 2021-06-03T19:10:48.0493913Z shell: /usr/local/bin/Rscript {0} 2021-06-03T19:10:48.0494274Z env: 2021-06-03T19:10:48.0494890Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:10:48.0495306Z TIC_DEPLOY_KEY: 2021-06-03T19:10:48.0496168Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:10:48.0498157Z GITHUB_PAT: *** 2021-06-03T19:10:48.0499198Z COVERALLS_TOKEN: *** 2021-06-03T19:10:48.0499892Z continue-on-error: false 2021-06-03T19:10:48.0500496Z VDIFFR_RUN_TESTS: 2021-06-03T19:10:48.0501140Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:10:48.0501552Z TZ: UTC 2021-06-03T19:10:48.0501925Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:10:48.0502678Z NOT_CRAN: true 2021-06-03T19:10:48.0503011Z ##[endgroup] 2021-06-03T19:11:07.2646190Z Installing 22 packages: base64enc, tinytex, htmltools, rmarkdown, matrixStats, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, bitops, GenomeInfoDbData, RCurl, zlibbioc, XVector, GenomeInfoDb, BiocManager, bookdown, DelayedArray, Biobase, GenomicRanges, BiocStyle, SummarizedExperiment 2021-06-03T19:11:07.2650257Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-06-03T19:11:07.2661822Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-06-03T19:11:07.2663167Z tinytex (NA -> 0.32 ) [CRAN] 2021-06-03T19:11:07.2665378Z (as ‘lib’ is unspecified) 2021-06-03T19:11:07.2666490Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-06-03T19:11:07.2668569Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-06-03T19:11:07.2670243Z matrixStats (NA -> 0.59.0 ) [CRAN] 2021-06-03T19:11:07.2671320Z IRanges (NA -> 2.26.0 ) [CRAN] 2021-06-03T19:11:07.2672244Z S4Vectors (NA -> 0.30.0 ) [CRAN] 2021-06-03T19:11:07.2672860Z MatrixGen... (NA -> 1.4.0 ) [CRAN] 2021-06-03T19:11:07.2673499Z BiocGenerics (NA -> 0.38.0 ) [CRAN] 2021-06-03T19:11:07.2674105Z bitops (NA -> 1.0-7 ) [CRAN] 2021-06-03T19:11:07.2674689Z GenomeInf... (NA -> 1.2.6 ) [CRAN] 2021-06-03T19:11:07.2675469Z RCurl (NA -> 1.98-1.3) [CRAN] 2021-06-03T19:11:07.2676003Z zlibbioc (NA -> 1.38.0 ) [CRAN] 2021-06-03T19:11:07.2676560Z XVector (NA -> 0.32.0 ) [CRAN] 2021-06-03T19:11:07.2677139Z GenomeInfoDb (NA -> 1.28.0 ) [CRAN] 2021-06-03T19:11:07.2677719Z BiocManager (NA -> 1.30.15 ) [CRAN] 2021-06-03T19:11:07.2678283Z bookdown (NA -> 0.22 ) [CRAN] 2021-06-03T19:11:07.2678843Z DelayedArray (NA -> 0.18.0 ) [CRAN] 2021-06-03T19:11:07.2679419Z Biobase (NA -> 2.52.0 ) [CRAN] 2021-06-03T19:11:07.2679984Z GenomicRa... (NA -> 1.44.0 ) [CRAN] 2021-06-03T19:11:07.2680546Z BiocStyle (NA -> 2.20.0 ) [CRAN] 2021-06-03T19:11:07.2681302Z Summarize... (NA -> 1.22.0 ) [CRAN] 2021-06-03T19:11:23.6405945Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-06-03T19:11:24.3315205Z Content type 'binary/octet-stream' length 38946 bytes (38 KB) 2021-06-03T19:11:24.3316233Z ================================================== 2021-06-03T19:11:24.3316971Z downloaded 38 KB 2021-06-03T19:11:24.3317697Z 2021-06-03T19:11:24.3354293Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.32.tar.gz' 2021-06-03T19:11:25.2356921Z Content type 'binary/octet-stream' length 120275 bytes (117 KB) 2021-06-03T19:11:25.2557847Z ================================================== 2021-06-03T19:11:25.2559790Z downloaded 117 KB 2021-06-03T19:11:25.2561302Z 2021-06-03T19:11:25.2605894Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-06-03T19:11:26.1906752Z Content type 'binary/octet-stream' length 236488 bytes (230 KB) 2021-06-03T19:11:26.2508656Z ================================================== 2021-06-03T19:11:26.2509549Z downloaded 230 KB 2021-06-03T19:11:26.2510110Z 2021-06-03T19:11:26.2553515Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-06-03T19:11:27.3499889Z Content type 'binary/octet-stream' length 3650634 bytes (3.5 MB) 2021-06-03T19:11:27.4280913Z ================================================== 2021-06-03T19:11:27.4283416Z downloaded 3.5 MB 2021-06-03T19:11:27.4284561Z 2021-06-03T19:11:27.4334465Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.59.0.tar.gz' 2021-06-03T19:11:28.1261687Z Content type 'binary/octet-stream' length 2549027 bytes (2.4 MB) 2021-06-03T19:11:28.1897343Z ================================================== 2021-06-03T19:11:28.1898453Z downloaded 2.4 MB 2021-06-03T19:11:28.1898974Z 2021-06-03T19:11:28.1937700Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/IRanges_2.26.0.tar.gz' 2021-06-03T19:11:28.3256820Z Content type 'application/x-gzip' length 454754 bytes (444 KB) 2021-06-03T19:11:28.3492381Z ================================================== 2021-06-03T19:11:28.3492860Z downloaded 444 KB 2021-06-03T19:11:28.3493115Z 2021-06-03T19:11:28.3533385Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/S4Vectors_0.30.0.tar.gz' 2021-06-03T19:11:28.4928780Z Content type 'application/x-gzip' length 666133 bytes (650 KB) 2021-06-03T19:11:28.5181342Z ================================================== 2021-06-03T19:11:28.5182257Z downloaded 650 KB 2021-06-03T19:11:28.5182626Z 2021-06-03T19:11:28.5206352Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/MatrixGenerics_1.4.0.tar.gz' 2021-06-03T19:11:28.6529157Z Content type 'application/x-gzip' length 27854 bytes (27 KB) 2021-06-03T19:11:28.6549075Z ================================================== 2021-06-03T19:11:28.6549563Z downloaded 27 KB 2021-06-03T19:11:28.6549837Z 2021-06-03T19:11:28.6577160Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/BiocGenerics_0.38.0.tar.gz' 2021-06-03T19:11:28.7898596Z Content type 'application/x-gzip' length 46716 bytes (45 KB) 2021-06-03T19:11:28.7955524Z ================================================== 2021-06-03T19:11:28.7956171Z downloaded 45 KB 2021-06-03T19:11:28.7956444Z 2021-06-03T19:11:28.7981805Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-06-03T19:11:29.4323882Z Content type 'binary/octet-stream' length 35035 bytes (34 KB) 2021-06-03T19:11:29.4440867Z ================================================== 2021-06-03T19:11:29.4441838Z downloaded 34 KB 2021-06-03T19:11:29.4442695Z 2021-06-03T19:11:29.4493019Z trying URL 'https://bioconductor.org/packages/3.13/data/annotation/src/contrib/GenomeInfoDbData_1.2.6.tar.gz' 2021-06-03T19:11:29.5803619Z Content type 'application/x-gzip' length 10973004 bytes (10.5 MB) 2021-06-03T19:11:29.6510263Z ================================================== 2021-06-03T19:11:29.6511412Z downloaded 10.5 MB 2021-06-03T19:11:29.6511927Z 2021-06-03T19:11:29.6543972Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RCurl_1.98-1.3.tar.gz' 2021-06-03T19:11:30.6818838Z Content type 'binary/octet-stream' length 1126721 bytes (1.1 MB) 2021-06-03T19:11:30.8374484Z ================================================== 2021-06-03T19:11:30.8376473Z downloaded 1.1 MB 2021-06-03T19:11:30.8376990Z 2021-06-03T19:11:30.8429665Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/zlibbioc_1.38.0.tar.gz' 2021-06-03T19:11:30.9772773Z Content type 'application/x-gzip' length 257226 bytes (251 KB) 2021-06-03T19:11:30.9949351Z ================================================== 2021-06-03T19:11:30.9949818Z downloaded 251 KB 2021-06-03T19:11:30.9950054Z 2021-06-03T19:11:30.9974662Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/XVector_0.32.0.tar.gz' 2021-06-03T19:11:31.1314108Z Content type 'application/x-gzip' length 67790 bytes (66 KB) 2021-06-03T19:11:31.1374854Z ================================================== 2021-06-03T19:11:31.1375943Z downloaded 66 KB 2021-06-03T19:11:31.1376380Z 2021-06-03T19:11:31.1402408Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/GenomeInfoDb_1.28.0.tar.gz' 2021-06-03T19:11:31.2732470Z Content type 'application/x-gzip' length 3455463 bytes (3.3 MB) 2021-06-03T19:11:31.3434764Z ================================================== 2021-06-03T19:11:31.3435319Z downloaded 3.3 MB 2021-06-03T19:11:31.3435596Z 2021-06-03T19:11:31.3464654Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/BiocManager_1.30.15.tar.gz' 2021-06-03T19:11:32.4433477Z Content type 'binary/octet-stream' length 328892 bytes (321 KB) 2021-06-03T19:11:32.4892713Z ================================================== 2021-06-03T19:11:32.4893804Z downloaded 321 KB 2021-06-03T19:11:32.4894478Z 2021-06-03T19:11:32.4942532Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bookdown_0.22.tar.gz' 2021-06-03T19:11:33.7735163Z Content type 'binary/octet-stream' length 1083520 bytes (1.0 MB) 2021-06-03T19:11:33.7736106Z ================================================== 2021-06-03T19:11:33.7736879Z downloaded 1.0 MB 2021-06-03T19:11:33.7737477Z 2021-06-03T19:11:33.7738552Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/DelayedArray_0.18.0.tar.gz' 2021-06-03T19:11:33.7739633Z Content type 'application/x-gzip' length 678949 bytes (663 KB) 2021-06-03T19:11:33.7740207Z ================================================== 2021-06-03T19:11:33.7740755Z downloaded 663 KB 2021-06-03T19:11:33.7740992Z 2021-06-03T19:11:33.7741908Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/Biobase_2.52.0.tar.gz' 2021-06-03T19:11:33.7742934Z Content type 'application/x-gzip' length 1641182 bytes (1.6 MB) 2021-06-03T19:11:33.7743475Z ================================================== 2021-06-03T19:11:33.7743866Z downloaded 1.6 MB 2021-06-03T19:11:33.7744128Z 2021-06-03T19:11:33.7745086Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/GenomicRanges_1.44.0.tar.gz' 2021-06-03T19:11:33.8545125Z Content type 'application/x-gzip' length 1174233 bytes (1.1 MB) 2021-06-03T19:11:33.8838691Z ================================================== 2021-06-03T19:11:33.8839479Z downloaded 1.1 MB 2021-06-03T19:11:33.8839940Z 2021-06-03T19:11:33.8860861Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/BiocStyle_2.20.0.tar.gz' 2021-06-03T19:11:34.0211486Z Content type 'application/x-gzip' length 755356 bytes (737 KB) 2021-06-03T19:11:34.0472193Z ================================================== 2021-06-03T19:11:34.0473017Z downloaded 737 KB 2021-06-03T19:11:34.0473592Z 2021-06-03T19:11:34.0496338Z trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/SummarizedExperiment_1.22.0.tar.gz' 2021-06-03T19:11:34.1816506Z Content type 'application/x-gzip' length 1528774 bytes (1.5 MB) 2021-06-03T19:11:34.2153174Z ================================================== 2021-06-03T19:11:34.2154586Z downloaded 1.5 MB 2021-06-03T19:11:34.2155636Z 2021-06-03T19:11:34.4289321Z * installing *binary* package ‘base64enc’ ... 2021-06-03T19:11:34.4326020Z * DONE (base64enc) 2021-06-03T19:11:34.6515251Z * installing *binary* package ‘tinytex’ ... 2021-06-03T19:11:34.6559375Z * DONE (tinytex) 2021-06-03T19:11:35.3835934Z * installing *binary* package ‘matrixStats’ ... 2021-06-03T19:11:35.3998180Z * DONE (matrixStats) 2021-06-03T19:11:35.6989027Z * installing *source* package ‘BiocGenerics’ ... 2021-06-03T19:11:35.6990470Z ** using staged installation 2021-06-03T19:11:35.7145038Z ** R 2021-06-03T19:11:35.7205176Z ** inst 2021-06-03T19:11:35.7217051Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:11:37.9537181Z Creating a new generic function for ‘append’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9538817Z ** help 2021-06-03T19:11:37.9539733Z Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9541477Z Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9542793Z Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9543972Z Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9545204Z Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9546450Z Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9547660Z Creating a new generic function for ‘eval’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9548813Z Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9549974Z Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9551126Z Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9552324Z Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9553504Z Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9554684Z Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9555838Z Creating a new generic function for ‘Find’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9557216Z Creating a new generic function for ‘Map’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9558389Z Creating a new generic function for ‘Position’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9559536Z Creating a new generic function for ‘get’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9560688Z Creating a new generic function for ‘mget’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9561817Z Creating a new generic function for ‘grep’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9562982Z Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9564178Z Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9565387Z Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9566556Z Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9567724Z Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9568896Z Creating a new generic function for ‘match’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9570058Z Creating a new generic function for ‘order’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9571225Z Creating a new generic function for ‘paste’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9572372Z Creating a new generic function for ‘rank’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9575313Z Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9576994Z Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9578476Z Creating a new generic function for ‘union’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9579999Z Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9581504Z Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9582963Z Creating a new generic function for ‘sort’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9584406Z Creating a new generic function for ‘table’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9588633Z Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9592088Z Creating a new generic function for ‘unique’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9593198Z Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9594282Z Creating a new generic function for ‘var’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9595637Z Creating a new generic function for ‘sd’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9596843Z Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9597935Z Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9599176Z Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9600267Z Creating a new generic function for ‘mad’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9601306Z Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9602406Z Creating a new generic function for ‘clusterCall’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9603553Z Creating a new generic function for ‘clusterApply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9604729Z Creating a new generic function for ‘clusterApplyLB’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9606289Z Creating a new generic function for ‘clusterEvalQ’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9607445Z Creating a new generic function for ‘clusterExport’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9608582Z Creating a new generic function for ‘clusterMap’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9610044Z Creating a new generic function for ‘parLapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9611158Z Creating a new generic function for ‘parSapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9612259Z Creating a new generic function for ‘parApply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9615823Z Creating a new generic function for ‘parRapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9617689Z Creating a new generic function for ‘parCapply’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9619751Z Creating a new generic function for ‘parLapplyLB’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9621698Z Creating a new generic function for ‘parSapplyLB’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9623254Z Creating a new generic function for ‘basename’ in package ‘BiocGenerics’ 2021-06-03T19:11:37.9625129Z Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’ 2021-06-03T19:11:38.2174090Z *** installing help indices 2021-06-03T19:11:38.3995108Z ** building package indices 2021-06-03T19:11:38.7284011Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:11:39.0829875Z ** testing if installed package can be loaded from final location 2021-06-03T19:11:39.5055499Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:11:39.5099655Z * DONE (BiocGenerics) 2021-06-03T19:11:39.7212109Z * installing *binary* package ‘bitops’ ... 2021-06-03T19:11:39.7253428Z * DONE (bitops) 2021-06-03T19:11:40.3338709Z * installing *source* package ‘GenomeInfoDbData’ ... 2021-06-03T19:11:40.3339945Z ** using staged installation 2021-06-03T19:11:40.3430326Z ** data 2021-06-03T19:11:40.3555092Z ** inst 2021-06-03T19:11:40.3563767Z ** help 2021-06-03T19:11:40.3654593Z *** installing help indices 2021-06-03T19:11:40.3851088Z ** building package indices 2021-06-03T19:11:40.5971142Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:11:40.7905916Z ** testing if installed package can be loaded from final location 2021-06-03T19:11:40.9743120Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:11:40.9747851Z * DONE (GenomeInfoDbData) 2021-06-03T19:11:41.2734673Z * installing *source* package ‘zlibbioc’ ... 2021-06-03T19:11:41.2738172Z ** using staged installation 2021-06-03T19:11:41.4170569Z configure: creating ./config.status 2021-06-03T19:11:41.4927110Z config.status: creating src/Makevars 2021-06-03T19:11:41.5386679Z ** libs 2021-06-03T19:11:41.5450411Z mkdir -p "/home/runner/work/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/include" 2021-06-03T19:11:41.5496489Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o 2021-06-03T19:11:41.5673501Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:11:41.5914237Z installing to /home/runner/work/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/libs 2021-06-03T19:11:41.5935108Z ** R 2021-06-03T19:11:41.5957647Z ** inst 2021-06-03T19:11:41.5969422Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:11:41.8120126Z ** help 2021-06-03T19:11:41.8243431Z *** installing help indices 2021-06-03T19:11:41.8468593Z ** building package indices 2021-06-03T19:11:42.0515320Z ** installing vignettes 2021-06-03T19:11:42.0564315Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:11:42.2829006Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:11:42.4494843Z ** testing if installed package can be loaded from final location 2021-06-03T19:11:42.6349215Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:11:42.6354426Z * DONE (zlibbioc) 2021-06-03T19:11:42.8870843Z * installing *binary* package ‘BiocManager’ ... 2021-06-03T19:11:42.8918549Z * DONE (BiocManager) 2021-06-03T19:11:43.1286989Z * installing *binary* package ‘htmltools’ ... 2021-06-03T19:11:43.1328836Z * DONE (htmltools) 2021-06-03T19:11:43.5154557Z * installing *source* package ‘S4Vectors’ ... 2021-06-03T19:11:43.5157198Z ** using staged installation 2021-06-03T19:11:43.5315672Z ** libs 2021-06-03T19:11:43.5370423Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c AEbufs.c -o AEbufs.o 2021-06-03T19:11:44.1493985Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c DataFrame_class.c -o DataFrame_class.o 2021-06-03T19:11:44.2077700Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Hits_class.c -o Hits_class.o 2021-06-03T19:11:44.4467509Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c LLint_class.c -o LLint_class.o 2021-06-03T19:11:44.7036005Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c List_class.c -o List_class.o 2021-06-03T19:11:44.7521189Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_init_S4Vectors.c -o R_init_S4Vectors.o 2021-06-03T19:11:44.8319712Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rle_class.c -o Rle_class.o 2021-06-03T19:11:45.2936576Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rle_utils.c -o Rle_utils.o 2021-06-03T19:11:45.6451474Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SEXP_utils.c -o SEXP_utils.o 2021-06-03T19:11:45.6860419Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SimpleList_class.c -o SimpleList_class.o 2021-06-03T19:11:45.7277874Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-06-03T19:11:45.7855543Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c character_utils.c -o character_utils.o 2021-06-03T19:11:45.8873461Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c eval_utils.c -o eval_utils.o 2021-06-03T19:11:45.9468854Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash_utils.c -o hash_utils.o 2021-06-03T19:11:46.0111129Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c integer_utils.c -o integer_utils.o 2021-06-03T19:11:46.3683690Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logical_utils.c -o logical_utils.o 2021-06-03T19:11:46.4224461Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map_ranges_to_runs.c -o map_ranges_to_runs.o 2021-06-03T19:11:46.6636844Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raw_utils.c -o raw_utils.o 2021-06-03T19:11:46.8244702Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c safe_arithm.c -o safe_arithm.o 2021-06-03T19:11:46.9150978Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sort_utils.c -o sort_utils.o 2021-06-03T19:11:47.3354890Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c subsetting_utils.c -o subsetting_utils.o 2021-06-03T19:11:47.4637682Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c vector_utils.c -o vector_utils.o 2021-06-03T19:11:47.5440608Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:11:47.5776171Z installing to /home/runner/work/_temp/Library/00LOCK-S4Vectors/00new/S4Vectors/libs 2021-06-03T19:11:47.5784355Z ** R 2021-06-03T19:11:47.6277842Z ** inst 2021-06-03T19:11:47.6313729Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:12:04.1315470Z in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” 2021-06-03T19:12:04.1317525Z ** help 2021-06-03T19:12:04.1318435Z Creating a new generic function for ‘unname’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1320291Z Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1321525Z Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1322984Z Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1324615Z in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” 2021-06-03T19:12:04.1325849Z Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1327111Z Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1328460Z Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1329852Z Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1331250Z Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1332699Z Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1334432Z Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1335726Z Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1337067Z Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1340095Z Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1341545Z Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1343330Z Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1344403Z Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1345441Z Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1346534Z Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ 2021-06-03T19:12:04.1347693Z in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” 2021-06-03T19:12:04.1348870Z Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ 2021-06-03T19:12:04.4007017Z *** installing help indices 2021-06-03T19:12:04.5903327Z ** building package indices 2021-06-03T19:12:04.9294870Z ** installing vignettes 2021-06-03T19:12:04.9360016Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:12:05.8785988Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:12:05.8980156Z ** testing if installed package can be loaded from final location 2021-06-03T19:12:07.1585466Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:12:07.1737093Z * DONE (S4Vectors) 2021-06-03T19:12:07.4453064Z * installing *source* package ‘MatrixGenerics’ ... 2021-06-03T19:12:07.4457083Z ** using staged installation 2021-06-03T19:12:07.4637731Z ** R 2021-06-03T19:12:07.4768427Z ** inst 2021-06-03T19:12:07.4780444Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:12:09.2357055Z ** help 2021-06-03T19:12:09.3900891Z *** installing help indices 2021-06-03T19:12:09.4878000Z ** building package indices 2021-06-03T19:12:09.7721044Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:12:10.0505749Z ** testing if installed package can be loaded from final location 2021-06-03T19:12:10.3340111Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:12:10.3354093Z * DONE (MatrixGenerics) 2021-06-03T19:12:10.6828969Z * installing *binary* package ‘RCurl’ ... 2021-06-03T19:12:10.6907975Z * DONE (RCurl) 2021-06-03T19:12:11.1622349Z * installing *source* package ‘Biobase’ ... 2021-06-03T19:12:11.1623805Z ** using staged installation 2021-06-03T19:12:11.1774211Z ** libs 2021-06-03T19:12:11.1828238Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-06-03T19:12:11.2287898Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-06-03T19:12:11.2860176Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envir.c -o envir.o 2021-06-03T19:12:11.3642182Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matchpt.c -o matchpt.o 2021-06-03T19:12:11.4328291Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-06-03T19:12:11.5837722Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sublist_extract.c -o sublist_extract.o 2021-06-03T19:12:11.6738192Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:12:11.6976357Z installing to /home/runner/work/_temp/Library/00LOCK-Biobase/00new/Biobase/libs 2021-06-03T19:12:11.6984176Z ** R 2021-06-03T19:12:11.7122521Z ** data 2021-06-03T19:12:11.7142407Z ** inst 2021-06-03T19:12:11.7219803Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:12:17.5013773Z ** help 2021-06-03T19:12:17.7522037Z *** installing help indices 2021-06-03T19:12:17.9383294Z ** building package indices 2021-06-03T19:12:18.7454725Z ** installing vignettes 2021-06-03T19:12:18.7498637Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:12:19.3015185Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:12:19.3224641Z ** testing if installed package can be loaded from final location 2021-06-03T19:12:19.9435280Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:12:19.9490891Z * DONE (Biobase) 2021-06-03T19:12:20.7576925Z * installing *binary* package ‘rmarkdown’ ... 2021-06-03T19:12:20.7781819Z * DONE (rmarkdown) 2021-06-03T19:12:21.1402187Z * installing *source* package ‘IRanges’ ... 2021-06-03T19:12:21.1404747Z ** using staged installation 2021-06-03T19:12:21.1605820Z ** libs 2021-06-03T19:12:21.1673494Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o 2021-06-03T19:12:21.5316492Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o 2021-06-03T19:12:21.6381846Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c CompressedList_class.c -o CompressedList_class.o 2021-06-03T19:12:21.6993401Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c Grouping_class.c -o Grouping_class.o 2021-06-03T19:12:21.7889780Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c IPosRanges_comparison.c -o IPosRanges_comparison.o 2021-06-03T19:12:21.8593956Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c IRanges_class.c -o IRanges_class.o 2021-06-03T19:12:22.0061391Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c IRanges_constructor.c -o IRanges_constructor.o 2021-06-03T19:12:22.1429839Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c NCList.c -o NCList.o 2021-06-03T19:12:22.4735803Z NCList.c: In function ‘C_print_NCListAsINTSXP’: 2021-06-03T19:12:22.4738490Z NCList.c:674:23: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 2021-06-03T19:12:22.4740034Z 674 | sprintf(format, "%c0%d%c", '%', max_digits, 'd'); 2021-06-03T19:12:22.4740725Z | ^~ 2021-06-03T19:12:22.4742232Z NCList.c:674:19: note: directive argument in the range [-2147483647, 2147483647] 2021-06-03T19:12:22.4743306Z 674 | sprintf(format, "%c0%d%c", '%', max_digits, 'd'); 2021-06-03T19:12:22.4743983Z | ^~~~~~~~~ 2021-06-03T19:12:22.4744657Z In file included from /usr/include/stdio.h:867, 2021-06-03T19:12:22.4745489Z from /opt/R/4.1.0/lib/R/include/Rinternals.h:39, 2021-06-03T19:12:22.4746340Z from /opt/R/4.1.0/lib/R/include/Rdefines.h:40, 2021-06-03T19:12:22.4747315Z from /home/runner/work/_temp/Library/S4Vectors/include/S4Vectors_defines.h:18, 2021-06-03T19:12:22.4748255Z from ../inst/include/IRanges_defines.h:18, 2021-06-03T19:12:22.4749122Z from IRanges.h:1, 2021-06-03T19:12:22.4749759Z from NCList.c:5: 2021-06-03T19:12:22.4751236Z /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 15 bytes into a destination of size 10 2021-06-03T19:12:22.4752786Z 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, 2021-06-03T19:12:22.4753582Z | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-06-03T19:12:22.4754242Z 37 | __bos (__s), __fmt, __va_arg_pack ()); 2021-06-03T19:12:22.4754858Z | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-06-03T19:12:22.5611953Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c R_init_IRanges.c -o R_init_IRanges.o 2021-06-03T19:12:22.6125960Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c Ranges_class.c -o Ranges_class.o 2021-06-03T19:12:22.6680470Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c RleViews_utils.c -o RleViews_utils.o 2021-06-03T19:12:23.0487173Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2021-06-03T19:12:23.4516648Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o 2021-06-03T19:12:23.5337710Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c coverage_methods.c -o coverage_methods.o 2021-06-03T19:12:23.8607774Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c extractListFragments.c -o extractListFragments.o 2021-06-03T19:12:23.9371035Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c inter_range_methods.c -o inter_range_methods.o 2021-06-03T19:12:24.1252201Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:12:24.1556080Z installing to /home/runner/work/_temp/Library/00LOCK-IRanges/00new/IRanges/libs 2021-06-03T19:12:24.1577953Z ** R 2021-06-03T19:12:24.2112193Z ** inst 2021-06-03T19:12:24.2149652Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:13:13.7969378Z Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7971590Z ** help 2021-06-03T19:13:13.7972583Z Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ 2021-06-03T19:13:13.7974620Z Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7976423Z Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7977699Z Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7978931Z Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7981236Z Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7982811Z Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7984427Z Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’ 2021-06-03T19:13:13.7986039Z Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ 2021-06-03T19:13:14.1816242Z *** installing help indices 2021-06-03T19:13:14.4273169Z ** building package indices 2021-06-03T19:13:14.7764017Z ** installing vignettes 2021-06-03T19:13:14.7858364Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:13:16.4653507Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:13:16.4836779Z ** testing if installed package can be loaded from final location 2021-06-03T19:13:18.6408691Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:13:18.6625068Z * DONE (IRanges) 2021-06-03T19:13:18.9446044Z * installing *source* package ‘XVector’ ... 2021-06-03T19:13:18.9448233Z ** using staged installation 2021-06-03T19:13:18.9604621Z ** libs 2021-06-03T19:13:18.9666283Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o 2021-06-03T19:13:19.1138023Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o 2021-06-03T19:13:19.2934957Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c RDS_random_access.c -o RDS_random_access.o 2021-06-03T19:13:19.5407976Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c R_init_XVector.c -o R_init_XVector.o 2021-06-03T19:13:19.5945835Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2021-06-03T19:13:20.0210542Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c SharedDouble_class.c -o SharedDouble_class.o 2021-06-03T19:13:20.0979266Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c SharedInteger_class.c -o SharedInteger_class.o 2021-06-03T19:13:20.1665213Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c SharedRaw_class.c -o SharedRaw_class.o 2021-06-03T19:13:20.3232397Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c SharedVector_class.c -o SharedVector_class.o 2021-06-03T19:13:20.4830901Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XDouble_class.c -o XDouble_class.o 2021-06-03T19:13:20.5381896Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XInteger_class.c -o XInteger_class.o 2021-06-03T19:13:20.5861922Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XRawList_comparison.c -o XRawList_comparison.o 2021-06-03T19:13:20.7507045Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XRaw_class.c -o XRaw_class.o 2021-06-03T19:13:20.8147240Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XVectorList_class.c -o XVectorList_class.o 2021-06-03T19:13:20.9898248Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c XVector_class.c -o XVector_class.o 2021-06-03T19:13:21.0536270Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c io_utils.c -o io_utils.o 2021-06-03T19:13:21.2363169Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c slice_methods.c -o slice_methods.o 2021-06-03T19:13:21.3298650Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c vector_copy.c -o vector_copy.o 2021-06-03T19:13:21.4468294Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c view_summarization_methods.c -o view_summarization_methods.o 2021-06-03T19:13:21.6549432Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:13:21.6902229Z installing to /home/runner/work/_temp/Library/00LOCK-XVector/00new/XVector/libs 2021-06-03T19:13:21.6921441Z ** R 2021-06-03T19:13:21.7084627Z ** inst 2021-06-03T19:13:21.7099439Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:13:28.4846565Z ** help 2021-06-03T19:13:28.5492694Z *** installing help indices 2021-06-03T19:13:28.6000106Z ** building package indices 2021-06-03T19:13:28.8549129Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:13:30.9327200Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:13:30.9524224Z ** testing if installed package can be loaded from final location 2021-06-03T19:13:33.1446865Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:13:33.1538782Z * DONE (XVector) 2021-06-03T19:13:33.7565352Z * installing *source* package ‘GenomeInfoDb’ ... 2021-06-03T19:13:33.7569117Z ** using staged installation 2021-06-03T19:13:33.7773255Z ** R 2021-06-03T19:13:33.8056511Z ** inst 2021-06-03T19:13:33.8240788Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:13:40.8319226Z ** help 2021-06-03T19:13:40.9239916Z *** installing help indices 2021-06-03T19:13:40.9819327Z ** building package indices 2021-06-03T19:13:41.2215063Z ** installing vignettes 2021-06-03T19:13:41.2271217Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:13:43.2068622Z ** testing if installed package can be loaded from final location 2021-06-03T19:13:45.2658862Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:13:45.2744728Z * DONE (GenomeInfoDb) 2021-06-03T19:13:45.6531152Z * installing *binary* package ‘bookdown’ ... 2021-06-03T19:13:45.6621938Z * DONE (bookdown) 2021-06-03T19:13:46.0246367Z * installing *source* package ‘DelayedArray’ ... 2021-06-03T19:13:46.0247896Z ** using staged installation 2021-06-03T19:13:46.0454557Z ** libs 2021-06-03T19:13:46.0505794Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c R_init_DelayedArray.c -o R_init_DelayedArray.o 2021-06-03T19:13:46.0898662Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2021-06-03T19:13:46.4971471Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c abind.c -o abind.o 2021-06-03T19:13:46.5708060Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c array_selection.c -o array_selection.o 2021-06-03T19:13:46.7095586Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c compress_atomic_vector.c -o compress_atomic_vector.o 2021-06-03T19:13:46.7635555Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include -fpic -g -O2 -c sparseMatrix_utils.c -o sparseMatrix_utils.o 2021-06-03T19:13:46.9195039Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:13:46.9455767Z installing to /home/runner/work/_temp/Library/00LOCK-DelayedArray/00new/DelayedArray/libs 2021-06-03T19:13:46.9456872Z ** R 2021-06-03T19:13:46.9913438Z ** inst 2021-06-03T19:13:46.9946476Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:14:06.3839561Z Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3841057Z Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3842566Z Creating a new generic function for ‘apply’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3843714Z Creating a new generic function for ‘sweep’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3844865Z Creating a new generic function for ‘scale’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3846082Z Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3847333Z Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3848601Z Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3849891Z Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3851188Z Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3852450Z Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3853968Z Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3855331Z Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3856585Z Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3857840Z Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3859106Z Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3860539Z Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ 2021-06-03T19:14:06.3862445Z ** help 2021-06-03T19:14:06.6349927Z *** installing help indices 2021-06-03T19:14:06.8440197Z ** building package indices 2021-06-03T19:14:07.1829849Z ** installing vignettes 2021-06-03T19:14:07.1924636Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:14:10.9313403Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:14:10.9490149Z ** testing if installed package can be loaded from final location 2021-06-03T19:14:15.1120123Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:14:15.1346864Z * DONE (DelayedArray) 2021-06-03T19:14:15.5757338Z * installing *source* package ‘GenomicRanges’ ... 2021-06-03T19:14:15.5759991Z ** using staged installation 2021-06-03T19:14:15.6033270Z ** libs 2021-06-03T19:14:15.6093833Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o 2021-06-03T19:14:15.7654965Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o 2021-06-03T19:14:15.8074658Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o 2021-06-03T19:14:16.2384341Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include -fpic -g -O2 -c transcript_utils.c -o transcript_utils.o 2021-06-03T19:14:16.3583977Z gcc -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-06-03T19:14:16.3897284Z installing to /home/runner/work/_temp/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs 2021-06-03T19:14:16.3899056Z ** R 2021-06-03T19:14:16.4206629Z ** inst 2021-06-03T19:14:16.4258405Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:14:31.6099029Z ** help 2021-06-03T19:14:31.8283639Z *** installing help indices 2021-06-03T19:14:31.9977729Z ** building package indices 2021-06-03T19:14:32.3535086Z ** installing vignettes 2021-06-03T19:14:32.3594005Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:14:35.1631885Z ** checking absolute paths in shared objects and dynamic libraries 2021-06-03T19:14:35.1820826Z ** testing if installed package can be loaded from final location 2021-06-03T19:14:38.1449492Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:14:38.1598109Z * DONE (GenomicRanges) 2021-06-03T19:14:38.5180611Z * installing *source* package ‘BiocStyle’ ... 2021-06-03T19:14:38.5184638Z ** using staged installation 2021-06-03T19:14:38.5372554Z ** R 2021-06-03T19:14:38.5467095Z ** inst 2021-06-03T19:14:38.5522988Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:14:39.4473624Z ** help 2021-06-03T19:14:39.4833746Z *** installing help indices 2021-06-03T19:14:39.5147111Z ** building package indices 2021-06-03T19:14:39.7412175Z ** installing vignettes 2021-06-03T19:14:39.7485455Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:14:40.0452127Z ** testing if installed package can be loaded from final location 2021-06-03T19:14:40.3470860Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:14:40.3486739Z * DONE (BiocStyle) 2021-06-03T19:14:40.8199112Z * installing *source* package ‘SummarizedExperiment’ ... 2021-06-03T19:14:40.8201402Z ** using staged installation 2021-06-03T19:14:40.8446751Z ** R 2021-06-03T19:14:40.8586425Z ** inst 2021-06-03T19:14:40.8653127Z ** byte-compile and prepare package for lazy loading 2021-06-03T19:14:54.2749764Z ** help 2021-06-03T19:14:54.3603264Z *** installing help indices 2021-06-03T19:14:54.4159543Z ** building package indices 2021-06-03T19:14:54.6556555Z ** installing vignettes 2021-06-03T19:14:54.6625708Z ** testing if installed package can be loaded from temporary location 2021-06-03T19:14:59.8332212Z ** testing if installed package can be loaded from final location 2021-06-03T19:15:05.2721656Z ** testing if installed package keeps a record of temporary installation path 2021-06-03T19:15:05.2883668Z * DONE (SummarizedExperiment) 2021-06-03T19:15:05.2956328Z 2021-06-03T19:15:05.2957210Z The downloaded source packages are in 2021-06-03T19:15:05.2959023Z ‘/tmp/RtmpBporHV/downloaded_packages’ 2021-06-03T19:15:20.9078856Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-06-03T19:15:20.9079930Z Use `force = TRUE` to force installation 2021-06-03T19:15:20.9092004Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-06-03T19:15:20.9093491Z Use `force = TRUE` to force installation 2021-06-03T19:15:20.9278741Z ##[group]Run options(width = 100) 2021-06-03T19:15:20.9279253Z options(width = 100) 2021-06-03T19:15:20.9279761Z pkgs <- installed.packages()[, "Package"] 2021-06-03T19:15:20.9280346Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-06-03T19:15:20.9287138Z shell: /usr/local/bin/Rscript {0} 2021-06-03T19:15:20.9287492Z env: 2021-06-03T19:15:20.9287878Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:15:20.9288276Z TIC_DEPLOY_KEY: 2021-06-03T19:15:20.9288968Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:15:20.9290458Z GITHUB_PAT: *** 2021-06-03T19:15:20.9291256Z COVERALLS_TOKEN: *** 2021-06-03T19:15:20.9291677Z continue-on-error: false 2021-06-03T19:15:20.9292092Z VDIFFR_RUN_TESTS: 2021-06-03T19:15:20.9292501Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:15:20.9292895Z TZ: UTC 2021-06-03T19:15:20.9293237Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:15:20.9296765Z NOT_CRAN: true 2021-06-03T19:15:20.9297200Z ##[endgroup] 2021-06-03T19:15:21.4385981Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-06-03T19:15:21.4386836Z setting value 2021-06-03T19:15:21.4387655Z version R version 4.1.0 (2021-05-18) 2021-06-03T19:15:21.4388072Z os Ubuntu 20.04.2 LTS 2021-06-03T19:15:21.4388592Z system x86_64, linux-gnu 2021-06-03T19:15:21.4390852Z ui X11 2021-06-03T19:15:21.4391450Z language (EN) 2021-06-03T19:15:21.4392100Z collate C.UTF-8 2021-06-03T19:15:21.4392845Z ctype C.UTF-8 2021-06-03T19:15:21.4393446Z tz UTC 2021-06-03T19:15:21.4393987Z date 2021-06-03 2021-06-03T19:15:21.4394614Z 2021-06-03T19:15:21.4395424Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-06-03T19:15:21.4396443Z package * version date lib source 2021-06-03T19:15:21.4397374Z aghast 0.2.1 2021-06-03 [1] Github (muschellij2/aghast@0c3b853) 2021-06-03T19:15:21.4398706Z askpass 1.1 2019-01-13 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4399544Z base * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4400238Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4400962Z Biobase 2.52.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4401717Z BiocGenerics 0.38.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4402474Z BiocManager 1.30.15 2021-05-11 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4403402Z BiocStyle 2.20.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4404341Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4405100Z bookdown 0.22 2021-04-22 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4405813Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4406540Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4407263Z brio 1.1.2 2021-04-23 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4408288Z cachem 1.0.5 2021-05-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4409043Z callr 3.7.0 2021-04-20 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4409714Z class 7.3-19 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4410743Z cli 2.5.0 2021-04-26 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4411500Z clipr 0.7.1 2020-10-08 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4412350Z cluster 2.1.2 2021-04-17 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4413257Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4415243Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4416115Z compiler 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4416853Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4417558Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4418574Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4419283Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4419966Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4420652Z datasets * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4421345Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4422071Z DelayedArray 0.18.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4422859Z desc 1.2.0.9000 2021-06-03 [1] Github (muschellij2/desc@7be86f2) 2021-06-03T19:15:21.4423959Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4424703Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4425442Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4426159Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4426901Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4427669Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4428693Z fansi 0.5.0 2021-05-25 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4429373Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4430055Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4430704Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4431378Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4432122Z GenomeInfoDb 1.28.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4432925Z GenomeInfoDbData 1.2.6 2021-06-03 [1] Bioconductor 2021-06-03T19:15:21.4434150Z GenomicRanges 1.44.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4434947Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4435651Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4436463Z ghtravis 0.15.1 2021-06-03 [1] Github (muschellij2/ghtravis@0b26809) 2021-06-03T19:15:21.4437462Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4438394Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4439473Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4440322Z graphics * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4441454Z grDevices * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4442475Z grid 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4443536Z highr 0.9 2021-04-16 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4444665Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4445426Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4446142Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4446925Z IRanges 2.26.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4448188Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4448882Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4450633Z knitr 1.33 2021-04-24 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4451593Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4452513Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4453923Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4455642Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4456373Z markdown 1.1 2019-08-07 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4457106Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4457831Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4461786Z MatrixGenerics 1.4.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4462787Z matrixStats 0.59.0 2021-06-01 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4463977Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4464706Z methods * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4466070Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4467513Z mime 0.10 2021-02-13 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4468431Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4469268Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4469983Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4470699Z parallel 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4471408Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4472104Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4472835Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4475342Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4476096Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4476861Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4477922Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4478703Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4479424Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4480222Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4480897Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4481594Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4482269Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4482940Z RCurl 1.98-1.3 2021-03-16 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4483828Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4484736Z remotes 2.4.0 2021-06-02 [1] CRAN (R 4.1.0) 2021-06-03T19:15:21.4485469Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4486192Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4486933Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4487682Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4488407Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4489151Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4489911Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4490843Z rversions 2.1.1 2021-05-31 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4492023Z S4Vectors 0.30.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4493103Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4494434Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4495987Z splines 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4496843Z stats * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4497668Z stats4 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4498850Z stringi 1.6.2 2021-05-17 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4499864Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4500959Z SummarizedExperiment 1.22.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4501918Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.1.0) 2021-06-03T19:15:21.4502721Z sys 3.4 2020-07-23 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4503564Z sysreqs 1.0.0.9000 2021-06-03 [1] Github (r-hub/sysreqs@f068afa) 2021-06-03T19:15:21.4504922Z tcltk 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4505660Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4506570Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4507605Z tic 0.10.0 2021-06-03 [1] Github (ropensci/tic@3b4dfb8) 2021-06-03T19:15:21.4508511Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4509294Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4510205Z tinytex 0.32 2021-05-29 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4511386Z tools 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4512316Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4513245Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4513979Z utils * 4.1.0 2021-05-18 [2] local 2021-06-03T19:15:21.4514864Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4515580Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4516310Z whisker 0.4 2019-08-28 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4517023Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4517742Z xfun 0.23 2021-05-15 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4518446Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4519178Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4519943Z XVector 0.32.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4520691Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4521408Z zip 2.2.0 2021-05-31 [1] RSPM (R 4.1.0) 2021-06-03T19:15:21.4522162Z zlibbioc 1.38.0 2021-05-19 [1] Bioconductor 2021-06-03T19:15:21.4522485Z 2021-06-03T19:15:21.4522880Z [1] /home/runner/work/_temp/Library 2021-06-03T19:15:21.4523342Z [2] /opt/R/4.1.0/lib/R/library 2021-06-03T19:15:21.4559099Z ##[group]Run Rscript -e 'tic::script()' 2021-06-03T19:15:21.4559621Z Rscript -e 'tic::script()' 2021-06-03T19:15:21.4560002Z ls -l check 2021-06-03T19:15:21.4605461Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-06-03T19:15:21.4605917Z env: 2021-06-03T19:15:21.4606287Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:15:21.4606707Z TIC_DEPLOY_KEY: 2021-06-03T19:15:21.4607394Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:15:21.4608962Z GITHUB_PAT: *** 2021-06-03T19:15:21.4609765Z COVERALLS_TOKEN: *** 2021-06-03T19:15:21.4610201Z continue-on-error: false 2021-06-03T19:15:21.4610905Z VDIFFR_RUN_TESTS: 2021-06-03T19:15:21.4611523Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:15:21.4611937Z TZ: UTC 2021-06-03T19:15:21.4612281Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:15:21.4612666Z NOT_CRAN: true 2021-06-03T19:15:21.4613003Z ##[endgroup] 2021-06-03T19:15:21.7302264Z ✔ Loading tic stage configuration from tic.R 2021-06-03T19:15:21.8778265Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-06-03T19:15:21.8779067Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-06-03T19:15:21.8779663Z timeout = Inf, check_dir = "check") 2021-06-03T19:15:21.9801812Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-06-03T19:15:22.1840212Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-06-03T19:15:22.1966540Z * preparing ‘neuroCombatData’: 2021-06-03T19:15:22.2070795Z * checking DESCRIPTION meta-information ... OK 2021-06-03T19:15:22.2521445Z * checking for LF line-endings in source and make files and shell scripts 2021-06-03T19:15:22.2526799Z * checking for empty or unneeded directories 2021-06-03T19:15:22.2560523Z * building ‘neuroCombatData_0.99.0.tar.gz’ 2021-06-03T19:15:22.3151338Z 2021-06-03T19:15:22.4520244Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-06-03T19:15:22.6684612Z * using log directory ‘/home/runner/work/neuroCombatData/neuroCombatData/check/neuroCombatData.Rcheck’ 2021-06-03T19:15:22.6686265Z * using R version 4.1.0 (2021-05-18) 2021-06-03T19:15:22.6687621Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-06-03T19:15:22.6688592Z * using session charset: UTF-8 2021-06-03T19:15:22.7137295Z * using option ‘--as-cran’ 2021-06-03T19:15:22.7156995Z * checking for file ‘neuroCombatData/DESCRIPTION’ ... OK 2021-06-03T19:15:22.7158429Z * this is package ‘neuroCombatData’ version ‘0.99.0’ 2021-06-03T19:15:22.7166700Z * package encoding: UTF-8 2021-06-03T19:15:22.7184244Z * checking package namespace information ... OK 2021-06-03T19:15:39.4148997Z * checking package dependencies ... OK 2021-06-03T19:15:39.4158738Z * checking if this is a source package ... OK 2021-06-03T19:15:39.4165944Z * checking if there is a namespace ... OK 2021-06-03T19:15:39.4728967Z * checking for executable files ... OK 2021-06-03T19:15:39.4730179Z * checking for hidden files and directories ... NOTE 2021-06-03T19:15:39.4731440Z Found the following hidden files and directories: 2021-06-03T19:15:39.4732357Z .travis.yml 2021-06-03T19:15:39.4733928Z These were most likely included in error. See section ‘Package 2021-06-03T19:15:39.4735191Z structure’ in the ‘Writing R Extensions’ manual. 2021-06-03T19:15:39.4736033Z * checking for portable file names ... OK 2021-06-03T19:15:39.4739443Z * checking for sufficient/correct file permissions ... OK 2021-06-03T19:15:55.7569736Z * checking whether package ‘neuroCombatData’ can be installed ... OK 2021-06-03T19:15:55.7647040Z * checking installed package size ... OK 2021-06-03T19:15:55.8866714Z * checking package directory ... OK 2021-06-03T19:15:55.8867789Z * checking for future file timestamps ... OK 2021-06-03T19:15:56.0460259Z * checking DESCRIPTION meta-information ... OK 2021-06-03T19:15:56.0461884Z * checking top-level files ... OK 2021-06-03T19:15:56.0462900Z * checking for left-over files ... OK 2021-06-03T19:15:56.0463979Z * checking index information ... OK 2021-06-03T19:15:56.1019654Z * checking package subdirectories ... OK 2021-06-03T19:15:56.1560840Z * checking R files for non-ASCII characters ... OK 2021-06-03T19:15:56.2102485Z * checking R files for syntax errors ... OK 2021-06-03T19:16:01.3620163Z * checking whether the package can be loaded ... OK 2021-06-03T19:16:06.6643051Z * checking whether the package can be loaded with stated dependencies ... OK 2021-06-03T19:16:12.0317955Z * checking whether the package can be unloaded cleanly ... OK 2021-06-03T19:16:16.7221657Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-06-03T19:16:22.3654361Z * checking whether the namespace can be unloaded cleanly ... OK 2021-06-03T19:16:26.9015788Z * checking loading without being on the library search path ... OK 2021-06-03T19:16:32.4048156Z * checking dependencies in R code ... OK 2021-06-03T19:16:38.3366653Z * checking S3 generic/method consistency ... OK 2021-06-03T19:16:43.7062485Z * checking replacement functions ... OK 2021-06-03T19:16:49.1295559Z * checking foreign function calls ... OK 2021-06-03T19:17:10.5464978Z * checking R code for possible problems ... OK 2021-06-03T19:17:10.7341697Z * checking Rd files ... OK 2021-06-03T19:17:10.7872440Z * checking Rd metadata ... OK 2021-06-03T19:17:10.8404607Z * checking Rd line widths ... OK 2021-06-03T19:17:10.9157847Z * checking Rd cross-references ... OK 2021-06-03T19:17:16.3254332Z * checking for missing documentation entries ... OK 2021-06-03T19:17:32.5225668Z * checking for code/documentation mismatches ... OK 2021-06-03T19:17:38.5914959Z * checking Rd \usage sections ... OK 2021-06-03T19:17:38.6596480Z * checking Rd contents ... OK 2021-06-03T19:17:38.7096019Z * checking for unstated dependencies in examples ... OK 2021-06-03T19:17:38.7109810Z * checking contents of ‘data’ directory ... OK 2021-06-03T19:17:43.8517156Z * checking data for non-ASCII characters ... OK 2021-06-03T19:17:43.8518739Z * checking LazyData ... OK 2021-06-03T19:17:44.4305350Z * checking data for ASCII and uncompressed saves ... OK 2021-06-03T19:17:44.6054413Z * checking examples ... NONE 2021-06-03T19:17:46.2078898Z * checking PDF version of manual ... OK 2021-06-03T19:17:46.2081603Z * checking for non-standard things in the check directory ... OK 2021-06-03T19:17:46.2082998Z * checking for detritus in the temp directory ... OK 2021-06-03T19:17:46.2083665Z * DONE 2021-06-03T19:17:46.2136581Z 2021-06-03T19:17:46.2137165Z Status: 1 NOTE 2021-06-03T19:17:46.2137631Z See 2021-06-03T19:17:46.2138965Z ‘/home/runner/work/neuroCombatData/neuroCombatData/check/neuroCombatData.Rcheck/00check.log’ 2021-06-03T19:17:46.2139885Z for details. 2021-06-03T19:17:46.2140238Z 2021-06-03T19:17:46.2140520Z 2021-06-03T19:17:46.3037246Z ── R CMD check results ───────────────────────────── neuroCombatData 0.99.0 ──── 2021-06-03T19:17:46.3057384Z Duration: 2m 24s 2021-06-03T19:17:46.3057651Z 2021-06-03T19:17:46.3093579Z ❯ checking for hidden files and directories ... NOTE 2021-06-03T19:17:46.3094541Z Found the following hidden files and directories: 2021-06-03T19:17:46.3095213Z .travis.yml 2021-06-03T19:17:46.3096169Z These were most likely included in error. See section ‘Package 2021-06-03T19:17:46.3096988Z structure’ in the ‘Writing R Extensions’ manual. 2021-06-03T19:17:46.3097327Z 2021-06-03T19:17:46.3110801Z 0 errors ✔ | 0 warnings ✔ | 1 note ✖ 2021-06-03T19:17:46.3213147Z total 1380 2021-06-03T19:17:46.3214761Z drwxr-xr-x 5 runner docker 4096 Jun 3 19:17 neuroCombatData.Rcheck 2021-06-03T19:17:46.3217252Z -rw-r--r-- 1 runner docker 700186 Jun 3 19:15 neuroCombatData_0.99.0.tar.gz 2021-06-03T19:17:46.3218681Z -rw-r--r-- 1 runner docker 708117 Jun 3 19:15 neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu.tar.gz 2021-06-03T19:17:46.3257427Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-06-03T19:17:46.3258179Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-06-03T19:17:46.3305368Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-06-03T19:17:46.3305836Z env: 2021-06-03T19:17:46.3306236Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:46.3306957Z TIC_DEPLOY_KEY: 2021-06-03T19:17:46.3307813Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:46.3309352Z GITHUB_PAT: *** 2021-06-03T19:17:46.3310027Z COVERALLS_TOKEN: *** 2021-06-03T19:17:46.3310458Z continue-on-error: false 2021-06-03T19:17:46.3311035Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:46.3311430Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:46.3311985Z TZ: UTC 2021-06-03T19:17:46.3312310Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:46.3312847Z NOT_CRAN: true 2021-06-03T19:17:46.3313191Z ##[endgroup] 2021-06-03T19:17:46.3427933Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-06-03T19:17:46.3428463Z Rscript -e "tic::before_deploy()" 2021-06-03T19:17:46.3466566Z shell: /usr/bin/bash -e {0} 2021-06-03T19:17:46.3466914Z env: 2021-06-03T19:17:46.3467284Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:46.3467700Z TIC_DEPLOY_KEY: 2021-06-03T19:17:46.3468374Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:46.3469509Z GITHUB_PAT: *** 2021-06-03T19:17:46.3470199Z COVERALLS_TOKEN: *** 2021-06-03T19:17:46.3470614Z continue-on-error: false 2021-06-03T19:17:46.3471030Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:46.3471451Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:46.3472001Z TZ: UTC 2021-06-03T19:17:46.3472350Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:46.3472710Z NOT_CRAN: true 2021-06-03T19:17:46.3473227Z ##[endgroup] 2021-06-03T19:17:46.6270233Z ✔ Loading tic stage configuration from tic.R 2021-06-03T19:17:46.7643800Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-06-03T19:17:46.7644323Z with: 2021-06-03T19:17:46.7645092Z upload_url: https://uploads.github.com/repos/neuroconductor/neuroCombatData/releases/44065807/assets{?name,label} 2021-06-03T19:17:46.7646057Z asset_path: check/neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu.tar.gz 2021-06-03T19:17:46.7646768Z asset_name: neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu_R4.0.tar.gz 2021-06-03T19:17:46.7647555Z asset_content_type: application/octet-stream 2021-06-03T19:17:46.7648110Z env: 2021-06-03T19:17:46.7648487Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:46.7648873Z TIC_DEPLOY_KEY: 2021-06-03T19:17:46.7649532Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:46.7650920Z GITHUB_PAT: *** 2021-06-03T19:17:46.7651932Z COVERALLS_TOKEN: *** 2021-06-03T19:17:46.7652381Z continue-on-error: false 2021-06-03T19:17:46.7652785Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:46.7653415Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:46.7654029Z TZ: UTC 2021-06-03T19:17:46.7654376Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:46.7654741Z NOT_CRAN: true 2021-06-03T19:17:46.7655833Z GITHUB_TOKEN: *** 2021-06-03T19:17:46.7656208Z ##[endgroup] 2021-06-03T19:17:47.3630941Z ##[group]Run Rscript -e "tic::deploy()" 2021-06-03T19:17:47.3631437Z Rscript -e "tic::deploy()" 2021-06-03T19:17:47.3671074Z shell: /usr/bin/bash -e {0} 2021-06-03T19:17:47.3671386Z env: 2021-06-03T19:17:47.3671755Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:47.3672140Z TIC_DEPLOY_KEY: 2021-06-03T19:17:47.3672764Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:47.3674009Z GITHUB_PAT: *** 2021-06-03T19:17:47.3674711Z COVERALLS_TOKEN: *** 2021-06-03T19:17:47.3675094Z continue-on-error: false 2021-06-03T19:17:47.3675835Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:47.3676390Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:47.3676770Z TZ: UTC 2021-06-03T19:17:47.3677099Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:47.3677435Z NOT_CRAN: true 2021-06-03T19:17:47.3677755Z ##[endgroup] 2021-06-03T19:17:47.6465213Z ✔ Loading tic stage configuration from tic.R 2021-06-03T19:17:47.7850585Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-06-03T19:17:47.7851088Z Rscript -e "tic::after_deploy()" 2021-06-03T19:17:47.7890759Z shell: /usr/bin/bash -e {0} 2021-06-03T19:17:47.7891102Z env: 2021-06-03T19:17:47.7891662Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:47.7892099Z TIC_DEPLOY_KEY: 2021-06-03T19:17:47.7892780Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:47.7894634Z GITHUB_PAT: *** 2021-06-03T19:17:47.7895411Z COVERALLS_TOKEN: *** 2021-06-03T19:17:47.7895832Z continue-on-error: false 2021-06-03T19:17:47.7896248Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:47.7896656Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:47.7897047Z TZ: UTC 2021-06-03T19:17:47.7897387Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:47.7897736Z NOT_CRAN: true 2021-06-03T19:17:47.7898070Z ##[endgroup] 2021-06-03T19:17:48.0602207Z ✔ Loading tic stage configuration from tic.R 2021-06-03T19:17:48.1985202Z ##[group]Run curl -s -H "Accept: application/json" \ 2021-06-03T19:17:48.1985853Z curl -s -H "Accept: application/json" \ 2021-06-03T19:17:48.1986395Z  -H "Content-Type: application/json" \ 2021-06-03T19:17:48.1986948Z  -H "Authorization: token $COVERALLS_TOKEN" \ 2021-06-03T19:17:48.1987570Z  -d '{"repo": {"service": "github","name": "'$GITHUB_REPOSITORY'"}}' \ 2021-06-03T19:17:48.1988196Z  -X POST https://coveralls.io/api/repos 2021-06-03T19:17:48.2030693Z shell: /usr/bin/bash -e {0} 2021-06-03T19:17:48.2030999Z env: 2021-06-03T19:17:48.2031356Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:48.2031719Z TIC_DEPLOY_KEY: 2021-06-03T19:17:48.2032353Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:48.2033731Z GITHUB_PAT: *** 2021-06-03T19:17:48.2034582Z COVERALLS_TOKEN: *** 2021-06-03T19:17:48.2035013Z continue-on-error: false 2021-06-03T19:17:48.2035452Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:48.2035879Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:48.2036254Z TZ: UTC 2021-06-03T19:17:48.2036594Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:48.2036957Z NOT_CRAN: true 2021-06-03T19:17:48.2037271Z ##[endgroup] 2021-06-03T19:17:48.5746061Z {"errors":{"name":"has already been taken"}} 2021-06-03T19:17:48.5782385Z ##[group]Run echo "COVERALLS_REPO_TOKEN=$(\ 2021-06-03T19:17:48.5783005Z echo "COVERALLS_REPO_TOKEN=$(\ 2021-06-03T19:17:48.5783555Z  curl -s -H "Accept: application/json" \ 2021-06-03T19:17:48.5784150Z  -H "Content-Type: application/json" \ 2021-06-03T19:17:48.5784755Z  -H "Authorization: token $COVERALLS_TOKEN" \ 2021-06-03T19:17:48.5785504Z  https://coveralls.io/api/repos/github/$GITHUB_REPOSITORY \ 2021-06-03T19:17:48.5786155Z  | jq '.token')" >> $GITHUB_ENV 2021-06-03T19:17:48.5835362Z shell: /usr/bin/bash -e {0} 2021-06-03T19:17:48.5835741Z env: 2021-06-03T19:17:48.5836435Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:48.5837059Z TIC_DEPLOY_KEY: 2021-06-03T19:17:48.5837843Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:48.5839568Z GITHUB_PAT: *** 2021-06-03T19:17:48.5840547Z COVERALLS_TOKEN: *** 2021-06-03T19:17:48.5841101Z continue-on-error: false 2021-06-03T19:17:48.5841820Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:48.5842327Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:48.5842785Z TZ: UTC 2021-06-03T19:17:48.5843191Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:48.5843629Z NOT_CRAN: true 2021-06-03T19:17:48.5844012Z ##[endgroup] 2021-06-03T19:17:48.8223264Z ##[group]Run covr::coveralls(service_name='drone', repo_token="jbxzJVhkVjmeZcW8XBQoPegLyoD0xx3dO") 2021-06-03T19:17:48.8224453Z covr::coveralls(service_name='drone', repo_token="jbxzJVhkVjmeZcW8XBQoPegLyoD0xx3dO") 2021-06-03T19:17:48.8232466Z shell: /usr/local/bin/Rscript {0} 2021-06-03T19:17:48.8232998Z env: 2021-06-03T19:17:48.8233535Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-06-03T19:17:48.8233938Z TIC_DEPLOY_KEY: 2021-06-03T19:17:48.8234599Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-06-03T19:17:48.8235788Z GITHUB_PAT: *** 2021-06-03T19:17:48.8236450Z COVERALLS_TOKEN: *** 2021-06-03T19:17:48.8236975Z continue-on-error: false 2021-06-03T19:17:48.8237668Z VDIFFR_RUN_TESTS: 2021-06-03T19:17:48.8238194Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-06-03T19:17:48.8238662Z TZ: UTC 2021-06-03T19:17:48.8239082Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-06-03T19:17:48.8239519Z NOT_CRAN: true 2021-06-03T19:17:48.8240372Z COVERALLS_REPO_TOKEN: "jbxzJVhkVjmeZcW8XBQoPegLyoD0xx3dO" 2021-06-03T19:17:48.8241241Z ##[endgroup] 2021-06-03T19:18:05.2742820Z Error in aggregate.data.frame(lhs, mf[-1L], FUN = FUN, ...) : 2021-06-03T19:18:05.2743666Z no rows to aggregate 2021-06-03T19:18:05.2744689Z Calls: ... aggregate -> aggregate.formula -> aggregate.data.frame 2021-06-03T19:18:05.2745368Z Execution halted 2021-06-03T19:18:05.2806408Z ##[error]Process completed with exit code 1. 2021-06-03T19:18:05.4618433Z Post job cleanup. 2021-06-03T19:18:05.5038681Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-06-03T19:18:05.5159990Z Post job cleanup. 2021-06-03T19:18:05.6191467Z [command]/usr/bin/git version 2021-06-03T19:18:05.6270759Z git version 2.31.1 2021-06-03T19:18:05.6306707Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-06-03T19:18:05.6344173Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-06-03T19:18:05.6591877Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-06-03T19:18:05.6622935Z http.https://github.com/.extraheader 2021-06-03T19:18:05.6632809Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-06-03T19:18:05.6670185Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-06-03T19:18:05.6939485Z Cleaning up orphan processes