2021-05-16T19:31:05.8329028Z ##[section]Starting: Request a runner to run this job 2021-05-16T19:31:06.4968780Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-16T19:31:06.5646234Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-16T19:31:06.6357683Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-16T19:31:06.7339799Z ##[section]Finishing: Request a runner to run this job 2021-05-16T19:31:12.6068704Z Current runner version: '2.278.0' 2021-05-16T19:31:12.6098359Z ##[group]Operating System 2021-05-16T19:31:12.6099389Z Ubuntu 2021-05-16T19:31:12.6099860Z 20.04.2 2021-05-16T19:31:12.6100385Z LTS 2021-05-16T19:31:12.6100884Z ##[endgroup] 2021-05-16T19:31:12.6101586Z ##[group]Virtual Environment 2021-05-16T19:31:12.6102342Z Environment: ubuntu-20.04 2021-05-16T19:31:12.6102938Z Version: 20210510.0 2021-05-16T19:31:12.6104091Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-16T19:31:12.6105596Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-16T19:31:12.6106635Z ##[endgroup] 2021-05-16T19:31:12.6108718Z ##[group]GITHUB_TOKEN Permissions 2021-05-16T19:31:12.6110140Z Actions: write 2021-05-16T19:31:12.6110718Z Checks: write 2021-05-16T19:31:12.6111225Z Contents: write 2021-05-16T19:31:12.6111837Z Deployments: write 2021-05-16T19:31:12.6112774Z Issues: write 2021-05-16T19:31:12.6113356Z Metadata: read 2021-05-16T19:31:12.6113930Z Packages: write 2021-05-16T19:31:12.6114498Z PullRequests: write 2021-05-16T19:31:12.6115181Z RepositoryProjects: write 2021-05-16T19:31:12.6115822Z SecurityEvents: write 2021-05-16T19:31:12.6116435Z Statuses: write 2021-05-16T19:31:12.6117043Z ##[endgroup] 2021-05-16T19:31:12.6120227Z Prepare workflow directory 2021-05-16T19:31:12.7212459Z Prepare all required actions 2021-05-16T19:31:12.7224320Z Getting action download info 2021-05-16T19:31:13.1231164Z Download action repository 'actions/checkout@v2' 2021-05-16T19:31:15.1244939Z Download action repository 'r-lib/actions@master' 2021-05-16T19:31:15.5871123Z Download action repository 'adigherman/actions@master' 2021-05-16T19:31:16.8303740Z Download action repository 'msys2/setup-msys2@v2' 2021-05-16T19:31:17.0580866Z Download action repository 'actions/cache@v1' 2021-05-16T19:31:17.2085166Z Download action repository 'actions/upload-artifact@master' 2021-05-16T19:31:17.3883724Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-16T19:31:17.8029774Z ##[group]Run actions/checkout@v2 2021-05-16T19:31:17.8030537Z with: 2021-05-16T19:31:17.8031131Z repository: neuroconductor/dcemriS4 2021-05-16T19:31:17.8032351Z token: *** 2021-05-16T19:31:17.8032994Z ssh-strict: true 2021-05-16T19:31:17.8033632Z persist-credentials: true 2021-05-16T19:31:17.8034201Z clean: true 2021-05-16T19:31:17.8034736Z fetch-depth: 1 2021-05-16T19:31:17.8035252Z lfs: false 2021-05-16T19:31:17.8035703Z submodules: false 2021-05-16T19:31:17.8036199Z env: 2021-05-16T19:31:17.8036717Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:31:17.8037323Z TIC_DEPLOY_KEY: 2021-05-16T19:31:17.8038322Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:31:17.8039878Z GITHUB_PAT: *** 2021-05-16T19:31:17.8040344Z COVERALLS_TOKEN: 2021-05-16T19:31:17.8040971Z continue-on-error: true 2021-05-16T19:31:17.8041586Z VDIFFR_RUN_TESTS: 2021-05-16T19:31:17.8042039Z ##[endgroup] 2021-05-16T19:31:18.0712903Z Syncing repository: neuroconductor/dcemriS4 2021-05-16T19:31:18.0717488Z ##[group]Getting Git version info 2021-05-16T19:31:18.0718808Z Working directory is '/home/runner/work/dcemriS4/dcemriS4' 2021-05-16T19:31:18.0758839Z [command]/usr/bin/git version 2021-05-16T19:31:18.1019498Z git version 2.31.1 2021-05-16T19:31:18.1026862Z ##[endgroup] 2021-05-16T19:31:18.1028054Z Deleting the contents of '/home/runner/work/dcemriS4/dcemriS4' 2021-05-16T19:31:18.1030334Z ##[group]Initializing the repository 2021-05-16T19:31:18.1031380Z [command]/usr/bin/git init /home/runner/work/dcemriS4/dcemriS4 2021-05-16T19:31:18.1107426Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-16T19:31:18.1108373Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-16T19:31:18.1109277Z hint: of your new repositories, which will suppress this warning, call: 2021-05-16T19:31:18.1109891Z hint: 2021-05-16T19:31:18.1110669Z hint: git config --global init.defaultBranch 2021-05-16T19:31:18.1111438Z hint: 2021-05-16T19:31:18.1112237Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-16T19:31:18.1113512Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-16T19:31:18.1114176Z hint: 2021-05-16T19:31:18.1114734Z hint: git branch -m 2021-05-16T19:31:18.1126314Z Initialized empty Git repository in /home/runner/work/dcemriS4/dcemriS4/.git/ 2021-05-16T19:31:18.1127477Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/dcemriS4 2021-05-16T19:31:18.1188337Z ##[endgroup] 2021-05-16T19:31:18.1189003Z ##[group]Disabling automatic garbage collection 2021-05-16T19:31:18.1190162Z [command]/usr/bin/git config --local gc.auto 0 2021-05-16T19:31:18.1252681Z ##[endgroup] 2021-05-16T19:31:18.1254965Z ##[group]Setting up auth 2021-05-16T19:31:18.1255988Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-16T19:31:18.1353838Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-16T19:31:18.1842664Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-16T19:31:18.1913619Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-16T19:31:18.2202843Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-16T19:31:18.2262357Z ##[endgroup] 2021-05-16T19:31:18.2263371Z ##[group]Fetching the repository 2021-05-16T19:31:18.2272273Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +3d6283b517cf00122f0c4baddddc01f3543020cd:refs/tags/0.57.2.s 2021-05-16T19:31:18.4496195Z remote: Enumerating objects: 102, done. 2021-05-16T19:31:18.4497296Z remote: Counting objects: 0% (1/102) 2021-05-16T19:31:18.4498211Z remote: Counting objects: 1% (2/102) 2021-05-16T19:31:18.4498952Z remote: Counting objects: 2% (3/102) 2021-05-16T19:31:18.4499761Z remote: Counting objects: 3% (4/102) 2021-05-16T19:31:18.4500487Z remote: Counting objects: 4% (5/102) 2021-05-16T19:31:18.4501250Z remote: Counting objects: 5% (6/102) 2021-05-16T19:31:18.4501933Z remote: Counting objects: 6% (7/102) 2021-05-16T19:31:18.4502654Z remote: Counting objects: 7% (8/102) 2021-05-16T19:31:18.4503315Z remote: Counting objects: 8% (9/102) 2021-05-16T19:31:18.4504059Z remote: Counting objects: 9% (10/102) 2021-05-16T19:31:18.4504700Z remote: Counting objects: 10% (11/102) 2021-05-16T19:31:18.4505326Z remote: Counting objects: 11% (12/102) 2021-05-16T19:31:18.4505967Z remote: Counting objects: 12% (13/102) 2021-05-16T19:31:18.4517894Z remote: Counting objects: 13% (14/102) 2021-05-16T19:31:18.4522738Z remote: Counting objects: 14% (15/102) 2021-05-16T19:31:18.4523371Z remote: Counting objects: 15% (16/102) 2021-05-16T19:31:18.4523977Z remote: Counting objects: 16% (17/102) 2021-05-16T19:31:18.4524562Z remote: Counting objects: 17% (18/102) 2021-05-16T19:31:18.4525160Z remote: Counting objects: 18% (19/102) 2021-05-16T19:31:18.4525742Z remote: Counting objects: 19% (20/102) 2021-05-16T19:31:18.4526361Z remote: Counting objects: 20% (21/102) 2021-05-16T19:31:18.4526992Z remote: Counting objects: 21% (22/102) 2021-05-16T19:31:18.4527613Z remote: Counting objects: 22% (23/102) 2021-05-16T19:31:18.4528177Z remote: Counting objects: 23% (24/102) 2021-05-16T19:31:18.4528725Z remote: Counting objects: 24% (25/102) 2021-05-16T19:31:18.4529294Z remote: Counting objects: 25% (26/102) 2021-05-16T19:31:18.4530047Z remote: Counting objects: 26% (27/102) 2021-05-16T19:31:18.4530639Z remote: Counting objects: 27% (28/102) 2021-05-16T19:31:18.4531159Z remote: Counting objects: 28% (29/102) 2021-05-16T19:31:18.4531691Z remote: Counting objects: 29% (30/102) 2021-05-16T19:31:18.4532256Z remote: Counting objects: 30% (31/102) 2021-05-16T19:31:18.4532776Z remote: Counting objects: 31% (32/102) 2021-05-16T19:31:18.4533313Z remote: Counting objects: 32% (33/102) 2021-05-16T19:31:18.4533836Z remote: Counting objects: 33% (34/102) 2021-05-16T19:31:18.4534370Z remote: Counting objects: 34% (35/102) 2021-05-16T19:31:18.4534887Z remote: Counting objects: 35% (36/102) 2021-05-16T19:31:18.4535420Z remote: Counting objects: 36% (37/102) 2021-05-16T19:31:18.4535940Z remote: Counting objects: 37% (38/102) 2021-05-16T19:31:18.4536475Z remote: Counting objects: 38% (39/102) 2021-05-16T19:31:18.4537014Z remote: Counting objects: 39% (40/102) 2021-05-16T19:31:18.4537530Z remote: Counting objects: 40% (41/102) 2021-05-16T19:31:18.4540700Z remote: Counting objects: 41% (42/102) 2021-05-16T19:31:18.4541267Z remote: Counting objects: 42% (43/102) 2021-05-16T19:31:18.4546864Z remote: Counting objects: 43% (44/102) 2021-05-16T19:31:18.4547478Z remote: Counting objects: 44% (45/102) 2021-05-16T19:31:18.4548057Z remote: Counting objects: 45% (46/102) 2021-05-16T19:31:18.4548616Z remote: Counting objects: 46% (47/102) 2021-05-16T19:31:18.4549188Z remote: Counting objects: 47% (48/102) 2021-05-16T19:31:18.4549747Z remote: Counting objects: 48% (49/102) 2021-05-16T19:31:18.4550318Z remote: Counting objects: 49% (50/102) 2021-05-16T19:31:18.4550889Z remote: Counting objects: 50% (51/102) 2021-05-16T19:31:18.4551452Z remote: Counting objects: 51% (53/102) 2021-05-16T19:31:18.4552021Z remote: Counting objects: 52% (54/102) 2021-05-16T19:31:18.4553046Z remote: Counting objects: 53% (55/102) 2021-05-16T19:31:18.4553634Z remote: Counting objects: 54% (56/102) 2021-05-16T19:31:18.4560864Z remote: Counting objects: 55% (57/102) 2021-05-16T19:31:18.4561457Z remote: Counting objects: 56% (58/102) 2021-05-16T19:31:18.4562024Z remote: Counting objects: 57% (59/102) 2021-05-16T19:31:18.4562608Z remote: Counting objects: 58% (60/102) 2021-05-16T19:31:18.4563183Z remote: Counting objects: 59% (61/102) 2021-05-16T19:31:18.4563738Z remote: Counting objects: 60% (62/102) 2021-05-16T19:31:18.4564306Z remote: Counting objects: 61% (63/102) 2021-05-16T19:31:18.4564952Z remote: Counting objects: 62% (64/102) 2021-05-16T19:31:18.4565672Z remote: Counting objects: 63% (65/102) 2021-05-16T19:31:18.4566606Z remote: Counting objects: 64% (66/102) 2021-05-16T19:31:18.4567126Z remote: Counting objects: 65% (67/102) 2021-05-16T19:31:18.4570304Z remote: Counting objects: 66% (68/102) 2021-05-16T19:31:18.4570842Z remote: Counting objects: 67% (69/102) 2021-05-16T19:31:18.4583762Z remote: Counting objects: 68% (70/102) 2021-05-16T19:31:18.4584352Z remote: Counting objects: 69% (71/102) 2021-05-16T19:31:18.4584929Z remote: Counting objects: 70% (72/102) 2021-05-16T19:31:18.4585492Z remote: Counting objects: 71% (73/102) 2021-05-16T19:31:18.4586075Z remote: Counting objects: 72% (74/102) 2021-05-16T19:31:18.4586652Z remote: Counting objects: 73% (75/102) 2021-05-16T19:31:18.4587214Z remote: Counting objects: 74% (76/102) 2021-05-16T19:31:18.4587787Z remote: Counting objects: 75% (77/102) 2021-05-16T19:31:18.4588346Z remote: Counting objects: 76% (78/102) 2021-05-16T19:31:18.4588919Z remote: Counting objects: 77% (79/102) 2021-05-16T19:31:18.4589474Z remote: Counting objects: 78% (80/102) 2021-05-16T19:31:18.4590229Z remote: Counting objects: 79% (81/102) 2021-05-16T19:31:18.4590788Z remote: Counting objects: 80% (82/102) 2021-05-16T19:31:18.4591364Z remote: Counting objects: 81% (83/102) 2021-05-16T19:31:18.4591934Z remote: Counting objects: 82% (84/102) 2021-05-16T19:31:18.4592633Z remote: Counting objects: 83% (85/102) 2021-05-16T19:31:18.4593218Z remote: Counting objects: 84% (86/102) 2021-05-16T19:31:18.4593779Z remote: Counting objects: 85% (87/102) 2021-05-16T19:31:18.4594354Z remote: Counting objects: 86% (88/102) 2021-05-16T19:31:18.4594988Z remote: Counting objects: 87% (89/102) 2021-05-16T19:31:18.4595519Z remote: Counting objects: 88% (90/102) 2021-05-16T19:31:18.4596038Z remote: Counting objects: 89% (91/102) 2021-05-16T19:31:18.4598884Z remote: Counting objects: 90% (92/102) 2021-05-16T19:31:18.4599433Z remote: Counting objects: 91% (93/102) 2021-05-16T19:31:18.4603437Z remote: Counting objects: 92% (94/102) 2021-05-16T19:31:18.4604038Z remote: Counting objects: 93% (95/102) 2021-05-16T19:31:18.4604568Z remote: Counting objects: 94% (96/102) 2021-05-16T19:31:18.4605097Z remote: Counting objects: 95% (97/102) 2021-05-16T19:31:18.4605619Z remote: Counting objects: 96% (98/102) 2021-05-16T19:31:18.4606155Z remote: Counting objects: 97% (99/102) 2021-05-16T19:31:18.4606679Z remote: Counting objects: 98% (100/102) 2021-05-16T19:31:18.4609213Z remote: Counting objects: 99% (101/102) 2021-05-16T19:31:18.4610379Z remote: Counting objects: 100% (102/102) 2021-05-16T19:31:18.4610973Z remote: Counting objects: 100% (102/102), done. 2021-05-16T19:31:18.4611607Z remote: Compressing objects: 1% (1/96) 2021-05-16T19:31:18.4614458Z remote: Compressing objects: 2% (2/96) 2021-05-16T19:31:18.4615250Z remote: Compressing objects: 3% (3/96) 2021-05-16T19:31:18.4615864Z remote: Compressing objects: 4% (4/96) 2021-05-16T19:31:18.4616658Z remote: Compressing objects: 5% (5/96) 2021-05-16T19:31:18.4617291Z remote: Compressing objects: 6% (6/96) 2021-05-16T19:31:18.4617901Z remote: Compressing objects: 7% (7/96) 2021-05-16T19:31:18.4618631Z remote: Compressing objects: 8% (8/96) 2021-05-16T19:31:18.4619198Z remote: Compressing objects: 9% (9/96) 2021-05-16T19:31:18.4619775Z remote: Compressing objects: 10% (10/96) 2021-05-16T19:31:18.4620346Z remote: Compressing objects: 11% (11/96) 2021-05-16T19:31:18.4620931Z remote: Compressing objects: 12% (12/96) 2021-05-16T19:31:18.4622985Z remote: Compressing objects: 13% (13/96) 2021-05-16T19:31:18.4623611Z remote: Compressing objects: 14% (14/96) 2021-05-16T19:31:18.4624194Z remote: Compressing objects: 15% (15/96) 2021-05-16T19:31:18.4624758Z remote: Compressing objects: 16% (16/96) 2021-05-16T19:31:18.4625339Z remote: Compressing objects: 17% (17/96) 2021-05-16T19:31:18.4625912Z remote: Compressing objects: 18% (18/96) 2021-05-16T19:31:18.4627605Z remote: Compressing objects: 19% (19/96) 2021-05-16T19:31:18.4628178Z remote: Compressing objects: 20% (20/96) 2021-05-16T19:31:18.4628759Z remote: Compressing objects: 21% (21/96) 2021-05-16T19:31:18.4629319Z remote: Compressing objects: 22% (22/96) 2021-05-16T19:31:18.4629892Z remote: Compressing objects: 23% (23/96) 2021-05-16T19:31:18.4630470Z remote: Compressing objects: 25% (24/96) 2021-05-16T19:31:18.4632065Z remote: Compressing objects: 26% (25/96) 2021-05-16T19:31:18.4632859Z remote: Compressing objects: 27% (26/96) 2021-05-16T19:31:18.4635558Z remote: Compressing objects: 28% (27/96) 2021-05-16T19:31:18.4636191Z remote: Compressing objects: 29% (28/96) 2021-05-16T19:31:18.4636760Z remote: Compressing objects: 30% (29/96) 2021-05-16T19:31:18.4637336Z remote: Compressing objects: 31% (30/96) 2021-05-16T19:31:18.4638050Z remote: Compressing objects: 32% (31/96) 2021-05-16T19:31:18.4638631Z remote: Compressing objects: 33% (32/96) 2021-05-16T19:31:18.4639214Z remote: Compressing objects: 34% (33/96) 2021-05-16T19:31:18.4639783Z remote: Compressing objects: 35% (34/96) 2021-05-16T19:31:18.4640357Z remote: Compressing objects: 36% (35/96) 2021-05-16T19:31:18.4640918Z remote: Compressing objects: 37% (36/96) 2021-05-16T19:31:18.4641491Z remote: Compressing objects: 38% (37/96) 2021-05-16T19:31:18.4642051Z remote: Compressing objects: 39% (38/96) 2021-05-16T19:31:19.6225503Z remote: Compressing objects: 40% (39/96) 2021-05-16T19:31:19.6322721Z remote: Compressing objects: 41% (40/96) 2021-05-16T19:31:19.6323377Z remote: Compressing objects: 42% (41/96) 2021-05-16T19:31:19.6323994Z remote: Compressing objects: 43% (42/96) 2021-05-16T19:31:19.6325372Z remote: Compressing objects: 44% (43/96) 2021-05-16T19:31:19.6327314Z remote: Compressing objects: 45% (44/96) 2021-05-16T19:31:19.6328559Z remote: Compressing objects: 46% (45/96) 2021-05-16T19:31:19.6329189Z remote: Compressing objects: 47% (46/96) 2021-05-16T19:31:19.6329799Z remote: Compressing objects: 48% (47/96) 2021-05-16T19:31:19.6330426Z remote: Compressing objects: 50% (48/96) 2021-05-16T19:31:19.6331031Z remote: Compressing objects: 51% (49/96) 2021-05-16T19:31:19.6331657Z remote: Compressing objects: 52% (50/96) 2021-05-16T19:31:19.6332259Z remote: Compressing objects: 53% (51/96) 2021-05-16T19:31:19.6332882Z remote: Compressing objects: 54% (52/96) 2021-05-16T19:31:19.6333485Z remote: Compressing objects: 55% (53/96) 2021-05-16T19:31:19.6334106Z remote: Compressing objects: 56% (54/96) 2021-05-16T19:31:19.6334723Z remote: Compressing objects: 57% (55/96) 2021-05-16T19:31:19.6335329Z remote: Compressing objects: 58% (56/96) 2021-05-16T19:31:19.6336184Z remote: Compressing objects: 59% (57/96) 2021-05-16T19:31:19.6336791Z remote: Compressing objects: 60% (58/96) 2021-05-16T19:31:19.6337413Z remote: Compressing objects: 61% (59/96) 2021-05-16T19:31:19.6338016Z remote: Compressing objects: 62% (60/96) 2021-05-16T19:31:19.6338730Z remote: Compressing objects: 63% (61/96) 2021-05-16T19:31:19.6339293Z remote: Compressing objects: 64% (62/96) 2021-05-16T19:31:19.6339876Z remote: Compressing objects: 65% (63/96) 2021-05-16T19:31:19.6340455Z remote: Compressing objects: 66% (64/96) 2021-05-16T19:31:19.6341019Z remote: Compressing objects: 67% (65/96) 2021-05-16T19:31:19.6341640Z remote: Compressing objects: 68% (66/96) 2021-05-16T19:31:19.6342133Z remote: Compressing objects: 69% (67/96) 2021-05-16T19:31:19.6342639Z remote: Compressing objects: 70% (68/96) 2021-05-16T19:31:19.6343138Z remote: Compressing objects: 71% (69/96) 2021-05-16T19:31:19.6343650Z remote: Compressing objects: 72% (70/96) 2021-05-16T19:31:19.6344143Z remote: Compressing objects: 73% (71/96) 2021-05-16T19:31:19.6344651Z remote: Compressing objects: 75% (72/96) 2021-05-16T19:31:19.6345157Z remote: Compressing objects: 76% (73/96) 2021-05-16T19:31:19.6345650Z remote: Compressing objects: 77% (74/96) 2021-05-16T19:31:19.6346156Z remote: Compressing objects: 78% (75/96) 2021-05-16T19:31:19.6346647Z remote: Compressing objects: 79% (76/96) 2021-05-16T19:31:19.6347153Z remote: Compressing objects: 80% (77/96) 2021-05-16T19:31:19.6347641Z remote: Compressing objects: 81% (78/96) 2021-05-16T19:31:19.6348148Z remote: Compressing objects: 82% (79/96) 2021-05-16T19:31:19.6348641Z remote: Compressing objects: 83% (80/96) 2021-05-16T19:31:19.6349148Z remote: Compressing objects: 84% (81/96) 2021-05-16T19:31:19.6349655Z remote: Compressing objects: 85% (82/96) 2021-05-16T19:31:19.6350225Z remote: Compressing objects: 86% (83/96) 2021-05-16T19:31:19.6350734Z remote: Compressing objects: 87% (84/96) 2021-05-16T19:31:19.6351225Z remote: Compressing objects: 88% (85/96) 2021-05-16T19:31:19.6351728Z remote: Compressing objects: 89% (86/96) 2021-05-16T19:31:19.6352220Z remote: Compressing objects: 90% (87/96) 2021-05-16T19:31:19.6352879Z remote: Compressing objects: 91% (88/96) 2021-05-16T19:31:19.6353376Z remote: Compressing objects: 92% (89/96) 2021-05-16T19:31:19.6353993Z remote: Compressing objects: 93% (90/96) 2021-05-16T19:31:19.6354472Z remote: Compressing objects: 94% (91/96) 2021-05-16T19:31:19.6354941Z remote: Compressing objects: 95% (92/96) 2021-05-16T19:31:19.6355418Z remote: Compressing objects: 96% (93/96) 2021-05-16T19:31:19.6355878Z remote: Compressing objects: 97% (94/96) 2021-05-16T19:31:19.6356365Z remote: Compressing objects: 98% (95/96) 2021-05-16T19:31:19.6356829Z remote: Compressing objects: 100% (96/96) 2021-05-16T19:31:19.6357332Z remote: Compressing objects: 100% (96/96), done. 2021-05-16T19:31:19.6357781Z Receiving objects: 0% (1/102) 2021-05-16T19:31:19.6358181Z Receiving objects: 1% (2/102) 2021-05-16T19:31:19.6358564Z Receiving objects: 2% (3/102) 2021-05-16T19:31:19.6358960Z Receiving objects: 3% (4/102) 2021-05-16T19:31:19.6359355Z Receiving objects: 4% (5/102) 2021-05-16T19:31:19.6359737Z Receiving objects: 5% (6/102) 2021-05-16T19:31:19.6360127Z Receiving objects: 6% (7/102) 2021-05-16T19:31:19.6360509Z Receiving objects: 7% (8/102) 2021-05-16T19:31:19.6360899Z Receiving objects: 8% (9/102) 2021-05-16T19:31:19.6361284Z Receiving objects: 9% (10/102) 2021-05-16T19:31:19.6361681Z Receiving objects: 10% (11/102) 2021-05-16T19:31:19.6362065Z Receiving objects: 11% (12/102) 2021-05-16T19:31:19.6362629Z Receiving objects: 12% (13/102) 2021-05-16T19:31:19.6363107Z Receiving objects: 13% (14/102) 2021-05-16T19:31:19.6363528Z Receiving objects: 14% (15/102) 2021-05-16T19:31:19.6363946Z Receiving objects: 15% (16/102) 2021-05-16T19:31:19.6364353Z Receiving objects: 16% (17/102) 2021-05-16T19:31:19.6364764Z Receiving objects: 17% (18/102) 2021-05-16T19:31:19.6365167Z Receiving objects: 18% (19/102) 2021-05-16T19:31:19.6365584Z Receiving objects: 19% (20/102) 2021-05-16T19:31:19.6365992Z Receiving objects: 20% (21/102) 2021-05-16T19:31:19.6366406Z Receiving objects: 21% (22/102) 2021-05-16T19:31:19.6366813Z Receiving objects: 22% (23/102) 2021-05-16T19:31:19.6367235Z Receiving objects: 23% (24/102) 2021-05-16T19:31:19.6367639Z Receiving objects: 24% (25/102) 2021-05-16T19:31:19.6368056Z Receiving objects: 25% (26/102) 2021-05-16T19:31:19.6368462Z Receiving objects: 26% (27/102) 2021-05-16T19:31:19.6368882Z Receiving objects: 27% (28/102) 2021-05-16T19:31:19.6369296Z Receiving objects: 28% (29/102) 2021-05-16T19:31:19.6369702Z Receiving objects: 29% (30/102) 2021-05-16T19:31:19.6370130Z Receiving objects: 30% (31/102) 2021-05-16T19:31:19.6370534Z Receiving objects: 31% (32/102) 2021-05-16T19:31:19.6370951Z Receiving objects: 32% (33/102) 2021-05-16T19:31:19.6371359Z Receiving objects: 33% (34/102) 2021-05-16T19:31:19.6371774Z Receiving objects: 34% (35/102) 2021-05-16T19:31:19.6372178Z Receiving objects: 35% (36/102) 2021-05-16T19:31:19.6372598Z Receiving objects: 36% (37/102) 2021-05-16T19:31:19.6373004Z Receiving objects: 37% (38/102) 2021-05-16T19:31:19.6373419Z Receiving objects: 38% (39/102) 2021-05-16T19:31:19.6373825Z Receiving objects: 39% (40/102) 2021-05-16T19:31:19.6374244Z Receiving objects: 40% (41/102) 2021-05-16T19:31:19.6374664Z Receiving objects: 41% (42/102) 2021-05-16T19:31:19.6375070Z Receiving objects: 42% (43/102) 2021-05-16T19:31:19.6375488Z Receiving objects: 43% (44/102) 2021-05-16T19:31:19.6375895Z Receiving objects: 44% (45/102) 2021-05-16T19:31:19.6376311Z Receiving objects: 45% (46/102) 2021-05-16T19:31:19.6376779Z Receiving objects: 46% (47/102) 2021-05-16T19:31:19.6377196Z Receiving objects: 47% (48/102) 2021-05-16T19:31:19.6377600Z Receiving objects: 48% (49/102) 2021-05-16T19:31:19.6378024Z Receiving objects: 49% (50/102) 2021-05-16T19:31:19.6378424Z Receiving objects: 50% (51/102) 2021-05-16T19:31:19.6378843Z Receiving objects: 51% (53/102) 2021-05-16T19:31:19.6379263Z Receiving objects: 52% (54/102) 2021-05-16T19:31:19.6379672Z Receiving objects: 53% (55/102) 2021-05-16T19:31:19.6380090Z Receiving objects: 54% (56/102) 2021-05-16T19:31:19.6380497Z Receiving objects: 55% (57/102) 2021-05-16T19:31:19.6380914Z Receiving objects: 56% (58/102) 2021-05-16T19:31:19.6381321Z Receiving objects: 57% (59/102) 2021-05-16T19:31:19.6381958Z Receiving objects: 58% (60/102) 2021-05-16T19:31:19.6382422Z Receiving objects: 59% (61/102) 2021-05-16T19:31:19.6383152Z Receiving objects: 60% (62/102) 2021-05-16T19:31:19.6383613Z Receiving objects: 61% (63/102) 2021-05-16T19:31:19.6384091Z Receiving objects: 62% (64/102) 2021-05-16T19:31:19.6384561Z Receiving objects: 63% (65/102) 2021-05-16T19:31:19.6385041Z Receiving objects: 64% (66/102) 2021-05-16T19:31:19.6385513Z Receiving objects: 65% (67/102) 2021-05-16T19:31:19.6385978Z Receiving objects: 66% (68/102) 2021-05-16T19:31:19.6386452Z Receiving objects: 67% (69/102) 2021-05-16T19:31:19.6386912Z Receiving objects: 68% (70/102) 2021-05-16T19:31:19.6387383Z Receiving objects: 69% (71/102) 2021-05-16T19:31:19.6387847Z Receiving objects: 70% (72/102) 2021-05-16T19:31:19.6388352Z Receiving objects: 71% (73/102) 2021-05-16T19:31:19.6388829Z Receiving objects: 72% (74/102) 2021-05-16T19:31:19.6389291Z Receiving objects: 73% (75/102) 2021-05-16T19:31:19.6389771Z Receiving objects: 74% (76/102) 2021-05-16T19:31:19.6390230Z Receiving objects: 75% (77/102) 2021-05-16T19:31:19.6390711Z Receiving objects: 76% (78/102) 2021-05-16T19:31:19.6391366Z Receiving objects: 77% (79/102) 2021-05-16T19:31:19.6391865Z Receiving objects: 78% (80/102) 2021-05-16T19:31:19.6392383Z Receiving objects: 79% (81/102) 2021-05-16T19:31:19.6393082Z Receiving objects: 80% (82/102) 2021-05-16T19:31:19.6393604Z Receiving objects: 81% (83/102) 2021-05-16T19:31:19.6394103Z Receiving objects: 82% (84/102) 2021-05-16T19:31:19.6394692Z Receiving objects: 83% (85/102) 2021-05-16T19:31:19.6395377Z Receiving objects: 84% (86/102) 2021-05-16T19:31:19.6396000Z Receiving objects: 85% (87/102) 2021-05-16T19:31:19.6396461Z Receiving objects: 86% (88/102) 2021-05-16T19:31:19.6396936Z Receiving objects: 87% (89/102) 2021-05-16T19:31:19.6397414Z Receiving objects: 88% (90/102) 2021-05-16T19:31:19.6397877Z Receiving objects: 89% (91/102) 2021-05-16T19:31:19.6398348Z Receiving objects: 90% (92/102) 2021-05-16T19:31:19.6398808Z Receiving objects: 91% (93/102) 2021-05-16T19:31:19.6399281Z Receiving objects: 92% (94/102) 2021-05-16T19:31:19.6399741Z Receiving objects: 93% (95/102) 2021-05-16T19:31:19.6400212Z Receiving objects: 94% (96/102) 2021-05-16T19:31:19.6400678Z Receiving objects: 95% (97/102) 2021-05-16T19:31:19.6401162Z Receiving objects: 96% (98/102) 2021-05-16T19:31:19.6402367Z remote: Total 102 (delta 12), reused 50 (delta 2), pack-reused 0 2021-05-16T19:31:19.6402972Z Receiving objects: 97% (99/102) 2021-05-16T19:31:19.6403441Z Receiving objects: 98% (100/102) 2021-05-16T19:31:19.6403925Z Receiving objects: 99% (101/102) 2021-05-16T19:31:19.6404407Z Receiving objects: 100% (102/102) 2021-05-16T19:31:19.6404945Z Receiving objects: 100% (102/102), 3.15 MiB | 16.52 MiB/s, done. 2021-05-16T19:31:19.6405488Z Resolving deltas: 0% (0/12) 2021-05-16T19:31:19.6405936Z Resolving deltas: 8% (1/12) 2021-05-16T19:31:19.6406403Z Resolving deltas: 16% (2/12) 2021-05-16T19:31:19.6406847Z Resolving deltas: 25% (3/12) 2021-05-16T19:31:19.6407308Z Resolving deltas: 33% (4/12) 2021-05-16T19:31:19.6407755Z Resolving deltas: 41% (5/12) 2021-05-16T19:31:19.6408215Z Resolving deltas: 50% (6/12) 2021-05-16T19:31:19.6408659Z Resolving deltas: 58% (7/12) 2021-05-16T19:31:19.6409117Z Resolving deltas: 66% (8/12) 2021-05-16T19:31:19.6409657Z Resolving deltas: 75% (9/12) 2021-05-16T19:31:19.6410104Z Resolving deltas: 83% (10/12) 2021-05-16T19:31:19.6410571Z Resolving deltas: 91% (11/12) 2021-05-16T19:31:19.6411071Z Resolving deltas: 100% (12/12) 2021-05-16T19:31:19.6411557Z Resolving deltas: 100% (12/12), done. 2021-05-16T19:31:19.6412223Z From https://github.com/neuroconductor/dcemriS4 2021-05-16T19:31:19.6413292Z * [new ref] 3d6283b517cf00122f0c4baddddc01f3543020cd -> 0.57.2.s 2021-05-16T19:31:19.6414772Z ##[endgroup] 2021-05-16T19:31:19.6415428Z ##[group]Determining the checkout info 2021-05-16T19:31:19.6415941Z ##[endgroup] 2021-05-16T19:31:19.6416380Z ##[group]Checking out the ref 2021-05-16T19:31:19.6417227Z [command]/usr/bin/git checkout --progress --force refs/tags/0.57.2.s 2021-05-16T19:31:19.6418107Z Note: switching to 'refs/tags/0.57.2.s'. 2021-05-16T19:31:19.6418447Z 2021-05-16T19:31:19.6419204Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-16T19:31:19.6420035Z changes and commit them, and you can discard any commits you make in this 2021-05-16T19:31:19.6421111Z state without impacting any branches by switching back to a branch. 2021-05-16T19:31:19.6421557Z 2021-05-16T19:31:19.6422089Z If you want to create a new branch to retain commits you create, you may 2021-05-16T19:31:19.6422994Z do so (now or later) by using -c with the switch command. Example: 2021-05-16T19:31:19.6423402Z 2021-05-16T19:31:19.6423978Z git switch -c 2021-05-16T19:31:19.6424530Z 2021-05-16T19:31:19.6425031Z Or undo this operation with: 2021-05-16T19:31:19.6425345Z 2021-05-16T19:31:19.6426650Z git switch - 2021-05-16T19:31:19.6426952Z 2021-05-16T19:31:19.6427626Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-16T19:31:19.6428219Z 2021-05-16T19:31:19.6428689Z HEAD is now at 3d6283b Version id 58 stable 2021-05-16T19:31:19.6429244Z ##[endgroup] 2021-05-16T19:31:19.6429903Z [command]/usr/bin/git log -1 --format='%H' 2021-05-16T19:31:19.6430947Z '3d6283b517cf00122f0c4baddddc01f3543020cd' 2021-05-16T19:31:19.6540190Z ##[group]Run r-lib/actions/setup-r@master 2021-05-16T19:31:19.6540660Z with: 2021-05-16T19:31:19.6541042Z r-version: devel 2021-05-16T19:31:19.6541432Z Ncpus: 1 2021-05-16T19:31:19.6541840Z crayon.enabled: NULL 2021-05-16T19:31:19.6542393Z remove-openmp-macos: true 2021-05-16T19:31:19.6542952Z http-user-agent: default 2021-05-16T19:31:19.6543428Z install-r: true 2021-05-16T19:31:19.6544003Z windows-path-include-mingw: true 2021-05-16T19:31:19.6544653Z env: 2021-05-16T19:31:19.6545030Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:31:19.6545448Z TIC_DEPLOY_KEY: 2021-05-16T19:31:19.6546165Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:31:19.6547825Z GITHUB_PAT: *** 2021-05-16T19:31:19.6548191Z COVERALLS_TOKEN: 2021-05-16T19:31:19.6548613Z continue-on-error: true 2021-05-16T19:31:19.6549039Z VDIFFR_RUN_TESTS: 2021-05-16T19:31:19.6549391Z ##[endgroup] 2021-05-16T19:31:21.0540749Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-16T19:31:22.8717454Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-16T19:31:22.8720395Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-16T19:31:22.8736024Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-16T19:31:22.8935419Z Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-16T19:31:22.9247177Z Get:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-16T19:31:23.0038552Z Hit:6 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-16T19:31:23.0971845Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-16T19:31:23.1409920Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-16T19:31:23.1755494Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [222 kB] 2021-05-16T19:31:23.1793989Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-16T19:31:23.1795818Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-16T19:31:23.1864675Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-16T19:31:23.1879857Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [774 kB] 2021-05-16T19:31:23.1997163Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [166 kB] 2021-05-16T19:31:23.2017259Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.4 kB] 2021-05-16T19:31:23.2566765Z Get:16 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-16T19:31:23.4014981Z Get:17 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-16T19:31:23.5002580Z Hit:18 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-16T19:31:23.5183322Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [655 kB] 2021-05-16T19:31:23.5862355Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [131 kB] 2021-05-16T19:31:23.5906391Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-16T19:31:23.5908529Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-16T19:31:23.5926282Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-16T19:31:23.5937875Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [565 kB] 2021-05-16T19:31:23.6047984Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.0 kB] 2021-05-16T19:31:30.8447469Z Fetched 4463 kB in 1s (3946 kB/s) 2021-05-16T19:31:31.7518912Z Reading package lists... 2021-05-16T19:31:31.7762716Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-16T19:31:33.8296113Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-16T19:31:33.9020702Z Reading package lists... 2021-05-16T19:31:34.0889485Z Building dependency tree... 2021-05-16T19:31:34.0923805Z Reading state information... 2021-05-16T19:31:34.2604390Z The following additional packages will be installed: 2021-05-16T19:31:34.2612776Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-16T19:31:34.2615276Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-16T19:31:34.2618228Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-16T19:31:34.2621346Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-16T19:31:34.2622845Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-16T19:31:34.2624175Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-16T19:31:34.2625569Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-16T19:31:34.2627368Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-16T19:31:34.2628857Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-16T19:31:34.2630277Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-16T19:31:34.2633162Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-16T19:31:34.2634715Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-16T19:31:34.2636380Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-16T19:31:34.2637987Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-16T19:31:34.2639476Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-16T19:31:34.2640775Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-16T19:31:34.2642343Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-16T19:31:34.2643821Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-16T19:31:34.2645446Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-16T19:31:34.2646829Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-16T19:31:34.2648054Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-16T19:31:34.2649326Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-16T19:31:34.2651045Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-16T19:31:34.2652799Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-16T19:31:34.2654206Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-16T19:31:34.2655562Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-16T19:31:34.2656995Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-16T19:31:34.2658455Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-16T19:31:34.2659921Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-16T19:31:34.2661400Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-16T19:31:34.2662858Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-16T19:31:34.2664410Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-16T19:31:34.2665977Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-16T19:31:34.2667376Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-16T19:31:34.2668758Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-16T19:31:34.2670193Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-16T19:31:34.2671516Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-16T19:31:34.2672841Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-16T19:31:34.2673806Z Suggested packages: 2021-05-16T19:31:34.2674720Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-16T19:31:34.2676012Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-16T19:31:34.2677264Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-16T19:31:34.2678797Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-16T19:31:34.2680138Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-16T19:31:34.2681435Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-16T19:31:34.2682600Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-16T19:31:34.2683932Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-16T19:31:34.2685495Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-16T19:31:34.2686847Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-16T19:31:34.8294574Z The following NEW packages will be installed: 2021-05-16T19:31:34.8297805Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-16T19:31:34.8299156Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-16T19:31:34.8301064Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-16T19:31:34.8303076Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-16T19:31:34.8304752Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-16T19:31:34.8312634Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-16T19:31:34.8314429Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-16T19:31:34.8316139Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-16T19:31:34.8318245Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-16T19:31:34.8322390Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-16T19:31:34.8323945Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-16T19:31:34.8325321Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-16T19:31:34.8326942Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-16T19:31:34.8328404Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-16T19:31:34.8329770Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-16T19:31:34.8331356Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-16T19:31:34.8332918Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-16T19:31:34.8334707Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-16T19:31:34.8336442Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-16T19:31:34.8337930Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-16T19:31:34.8339257Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-16T19:31:34.8340622Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-16T19:31:34.8342264Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-16T19:31:34.8343814Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-16T19:31:34.8345231Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-16T19:31:34.8346572Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-16T19:31:34.8348014Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-16T19:31:34.8349435Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-16T19:31:34.8350897Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-16T19:31:34.8352713Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-16T19:31:34.8354204Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-16T19:31:34.8355775Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-16T19:31:34.8357590Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-16T19:31:34.8359119Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-16T19:31:34.8360599Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-16T19:31:34.8362152Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-16T19:31:34.8363572Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-16T19:31:34.8364747Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-16T19:31:34.8553351Z 0 upgraded, 130 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:31:35.6325935Z Need to get 8648 kB of archives. 2021-05-16T19:31:35.6354100Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-16T19:31:35.6356170Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-16T19:31:35.6358324Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-16T19:31:35.6360309Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-16T19:31:35.6362236Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-16T19:31:35.6364176Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-16T19:31:35.6366273Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-16T19:31:35.6368495Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-16T19:31:35.6371039Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-16T19:31:35.6373288Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-16T19:31:35.6375468Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-16T19:31:35.6381213Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-16T19:31:35.6383011Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-16T19:31:35.6384707Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-16T19:31:35.6386418Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-16T19:31:35.6388131Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-16T19:31:35.6389733Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-16T19:31:35.6391290Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-16T19:31:35.6425664Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-16T19:31:35.6427084Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-16T19:31:35.6428937Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-16T19:31:35.6430520Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-16T19:31:35.6431894Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-16T19:31:35.6434128Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-16T19:31:35.6435735Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-16T19:31:35.6437285Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-16T19:31:35.6438942Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-16T19:31:35.6440631Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-16T19:31:35.6442348Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-16T19:31:35.6444111Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-16T19:31:35.6445921Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-16T19:31:35.6447874Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-16T19:31:35.6449958Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-16T19:31:35.6451946Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-16T19:31:35.6453830Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-16T19:31:35.6455638Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-16T19:31:35.6457483Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-16T19:31:35.6459250Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-16T19:31:35.6461068Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-16T19:31:35.6462879Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-16T19:31:35.6464623Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-16T19:31:35.6466365Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-16T19:31:35.6468123Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-16T19:31:35.6469842Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-16T19:31:35.6471505Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-16T19:31:35.6481241Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-16T19:31:35.6483339Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-16T19:31:35.6485252Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-16T19:31:35.6487119Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-16T19:31:35.6488898Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-16T19:31:35.6490575Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-16T19:31:35.6492200Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-16T19:31:35.6493908Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-16T19:31:35.6495874Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-16T19:31:35.6497677Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-16T19:31:35.6499427Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-16T19:31:35.6501180Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-16T19:31:35.6502907Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-16T19:31:35.6504637Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-16T19:31:35.6506372Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-16T19:31:35.6508025Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-16T19:31:35.6511320Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-16T19:31:35.6513388Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-16T19:31:35.6515435Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-16T19:31:35.6517384Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-16T19:31:35.6519119Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-16T19:31:35.6520960Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-16T19:31:35.6522798Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-16T19:31:35.6524674Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-16T19:31:35.6526270Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-16T19:31:35.6528127Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-16T19:31:35.6530036Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-16T19:31:35.6553093Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-16T19:31:35.6555226Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-16T19:31:35.6556995Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-16T19:31:35.6558791Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-16T19:31:35.6560480Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-16T19:31:35.6562187Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-16T19:31:35.6564007Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-16T19:31:35.6565778Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-16T19:31:35.6567446Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-16T19:31:35.6569142Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-16T19:31:35.6570961Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-16T19:31:35.6573042Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-16T19:31:35.6574838Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-16T19:31:35.6576575Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-16T19:31:35.6578320Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-16T19:31:35.6580117Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-16T19:31:35.6581937Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-16T19:31:35.6583765Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-16T19:31:35.6585590Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-16T19:31:35.6587343Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-16T19:31:35.6589054Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-16T19:31:35.6590779Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-16T19:31:35.6592722Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-16T19:31:35.6594522Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-16T19:31:35.6596357Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-16T19:31:35.6598283Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-16T19:31:35.6600255Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-16T19:31:35.6602047Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-16T19:31:35.6603830Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-16T19:31:35.6605496Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-16T19:31:35.6607195Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-16T19:31:35.6608919Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-16T19:31:35.6610563Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-16T19:31:35.6612294Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-16T19:31:35.6614203Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-16T19:31:35.6616135Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-16T19:31:35.6618019Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-16T19:31:35.6619930Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-16T19:31:35.6621680Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-16T19:31:35.6623348Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-16T19:31:35.6625150Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-16T19:31:35.6627041Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-16T19:31:35.6628942Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-16T19:31:35.6630788Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-16T19:31:35.6632701Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-16T19:31:35.6634458Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-16T19:31:35.6636286Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-16T19:31:35.6638076Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-16T19:31:35.6639885Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-16T19:31:35.6641628Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-16T19:31:35.6643408Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-16T19:31:35.6645113Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-16T19:31:35.6646827Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-16T19:31:35.6648451Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-16T19:31:35.6649711Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-16T19:31:35.6651275Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-16T19:31:35.6652991Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-16T19:31:35.6654613Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-16T19:31:35.6656204Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-16T19:31:35.9721008Z Fetched 8648 kB in 0s (26.0 MB/s) 2021-05-16T19:31:36.0212905Z Selecting previously unselected package dctrl-tools. 2021-05-16T19:31:36.0629586Z (Reading database ... 2021-05-16T19:31:36.0630345Z (Reading database ... 5% 2021-05-16T19:31:36.0630789Z (Reading database ... 10% 2021-05-16T19:31:36.0631311Z (Reading database ... 15% 2021-05-16T19:31:36.0631770Z (Reading database ... 20% 2021-05-16T19:31:36.0632203Z (Reading database ... 25% 2021-05-16T19:31:36.0632847Z (Reading database ... 30% 2021-05-16T19:31:36.0633411Z (Reading database ... 35% 2021-05-16T19:31:36.0633888Z (Reading database ... 40% 2021-05-16T19:31:36.0634333Z (Reading database ... 45% 2021-05-16T19:31:36.0634946Z (Reading database ... 50% 2021-05-16T19:31:36.1133223Z (Reading database ... 55% 2021-05-16T19:31:36.1901800Z (Reading database ... 60% 2021-05-16T19:31:36.2592421Z (Reading database ... 65% 2021-05-16T19:31:36.3321096Z (Reading database ... 70% 2021-05-16T19:31:36.4437908Z (Reading database ... 75% 2021-05-16T19:31:36.5560829Z (Reading database ... 80% 2021-05-16T19:31:36.6857126Z (Reading database ... 85% 2021-05-16T19:31:36.7864711Z (Reading database ... 90% 2021-05-16T19:31:36.8698921Z (Reading database ... 95% 2021-05-16T19:31:36.8701509Z (Reading database ... 100% 2021-05-16T19:31:36.8702205Z (Reading database ... 254809 files and directories currently installed.) 2021-05-16T19:31:36.8808064Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-16T19:31:36.8916122Z Unpacking dctrl-tools (2.24-3) ... 2021-05-16T19:31:36.9289283Z Selecting previously unselected package libfile-which-perl. 2021-05-16T19:31:36.9593662Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-16T19:31:36.9634675Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-16T19:31:36.9994985Z Selecting previously unselected package libfile-homedir-perl. 2021-05-16T19:31:37.0250030Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb 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... 2021-05-16T19:31:38.4673686Z Unpacking dput (1.0.3ubuntu1) ... 2021-05-16T19:31:38.5032087Z Selecting previously unselected package gdebi-core. 2021-05-16T19:31:38.5313310Z Preparing to unpack .../022-gdebi-core_0.9.5.7+nmu3_all.deb ... 2021-05-16T19:31:38.5331538Z Unpacking gdebi-core (0.9.5.7+nmu3) ... 2021-05-16T19:31:38.6674598Z Selecting previously unselected package libcroco3:amd64. 2021-05-16T19:31:38.6929739Z Preparing to unpack .../023-libcroco3_0.6.13-1_amd64.deb ... 2021-05-16T19:31:38.6972398Z Unpacking libcroco3:amd64 (0.6.13-1) ... 2021-05-16T19:31:38.7433875Z Selecting previously unselected package gettext. 2021-05-16T19:31:38.7749849Z Preparing to unpack .../024-gettext_0.19.8.1-10build1_amd64.deb ... 2021-05-16T19:31:38.7774881Z Unpacking gettext (0.19.8.1-10build1) ... 2021-05-16T19:31:38.9020570Z Selecting previously unselected package intltool-debian. 2021-05-16T19:31:38.9300592Z Preparing to unpack .../025-intltool-debian_0.35.0+20060710.5_all.deb ... 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unpack .../029-libasync-mergepoint-perl_0.04-2_all.deb ... 2021-05-16T19:31:39.1822910Z Unpacking libasync-mergepoint-perl (0.04-2) ... 2021-05-16T19:31:39.2145962Z Selecting previously unselected package libmodule-implementation-perl. 2021-05-16T19:31:39.2427140Z Preparing to unpack .../030-libmodule-implementation-perl_0.09-1_all.deb ... 2021-05-16T19:31:39.2453682Z Unpacking libmodule-implementation-perl (0.09-1) ... 2021-05-16T19:31:39.2795291Z Selecting previously unselected package libsub-exporter-progressive-perl. 2021-05-16T19:31:39.3073311Z Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-1_all.deb ... 2021-05-16T19:31:39.3091510Z Unpacking libsub-exporter-progressive-perl (0.001013-1) ... 2021-05-16T19:31:39.3434756Z Selecting previously unselected package libvariable-magic-perl. 2021-05-16T19:31:39.3664538Z Preparing to unpack .../032-libvariable-magic-perl_0.62-1build2_amd64.deb ... 2021-05-16T19:31:39.3717700Z Unpacking libvariable-magic-perl 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2021-05-16T19:31:41.6090608Z Preparing to unpack .../066-libio-prompter-perl_0.004015-1_all.deb ... 2021-05-16T19:31:41.6106913Z Unpacking libio-prompter-perl (0.004015-1) ... 2021-05-16T19:31:41.6474936Z Selecting previously unselected package libjson-perl. 2021-05-16T19:31:41.6747177Z Preparing to unpack .../067-libjson-perl_4.02000-2_all.deb ... 2021-05-16T19:31:41.6765825Z Unpacking libjson-perl (4.02000-2) ... 2021-05-16T19:31:41.7155233Z Selecting previously unselected package liblog-any-perl. 2021-05-16T19:31:41.7426969Z Preparing to unpack .../068-liblog-any-perl_1.708-1_all.deb ... 2021-05-16T19:31:41.7442776Z Unpacking liblog-any-perl (1.708-1) ... 2021-05-16T19:31:41.7834894Z Selecting previously unselected package liblog-any-adapter-screen-perl. 2021-05-16T19:31:41.8070199Z Preparing to unpack .../069-liblog-any-adapter-screen-perl_0.140-1_all.deb ... 2021-05-16T19:31:41.8090605Z Unpacking liblog-any-adapter-screen-perl (0.140-1) ... 2021-05-16T19:31:41.8464317Z Selecting previously unselected package libpackage-stash-perl. 2021-05-16T19:31:41.8706967Z Preparing to unpack .../070-libpackage-stash-perl_0.38-1_all.deb ... 2021-05-16T19:31:41.8730019Z Unpacking libpackage-stash-perl (0.38-1) ... 2021-05-16T19:31:41.9115407Z Selecting previously unselected package libsub-identify-perl. 2021-05-16T19:31:41.9353444Z Preparing to unpack .../071-libsub-identify-perl_0.14-1build2_amd64.deb ... 2021-05-16T19:31:41.9380220Z Unpacking libsub-identify-perl (0.14-1build2) ... 2021-05-16T19:31:41.9715226Z Selecting previously unselected package libsub-name-perl. 2021-05-16T19:31:41.9960473Z Preparing to unpack .../072-libsub-name-perl_0.26-1_amd64.deb ... 2021-05-16T19:31:41.9983624Z Unpacking libsub-name-perl (0.26-1) ... 2021-05-16T19:31:42.0316087Z Selecting previously unselected package libnamespace-clean-perl. 2021-05-16T19:31:42.0599365Z Preparing to unpack .../073-libnamespace-clean-perl_0.27-1_all.deb ... 2021-05-16T19:31:42.0615064Z Unpacking 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libio-async-loop-epoll-perl. 2021-05-16T19:31:42.6420981Z Preparing to unpack .../081-libio-async-loop-epoll-perl_0.20-1_all.deb ... 2021-05-16T19:31:42.6448332Z Unpacking libio-async-loop-epoll-perl (0.20-1) ... 2021-05-16T19:31:42.6754543Z Selecting previously unselected package libtypes-serialiser-perl. 2021-05-16T19:31:42.7081198Z Preparing to unpack .../082-libtypes-serialiser-perl_1.0-1_all.deb ... 2021-05-16T19:31:42.7100059Z Unpacking libtypes-serialiser-perl (1.0-1) ... 2021-05-16T19:31:42.7561189Z Selecting previously unselected package libjson-xs-perl. 2021-05-16T19:31:42.7838451Z Preparing to unpack .../083-libjson-xs-perl_4.020-1build1_amd64.deb ... 2021-05-16T19:31:42.7864910Z Unpacking libjson-xs-perl (4.020-1build1) ... 2021-05-16T19:31:42.8354141Z Selecting previously unselected package libjson-maybexs-perl. 2021-05-16T19:31:42.8577596Z Preparing to unpack .../084-libjson-maybexs-perl_1.004000-1_all.deb ... 2021-05-16T19:31:42.8596749Z Unpacking libjson-maybexs-perl 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r-devel (1) ... 2021-05-16T19:32:10.4711692Z 2021-05-16T19:32:10.4713158Z 2021-05-16T19:32:10.4714436Z Reading state information... Done 2021-05-16T19:32:10.4949285Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-16T19:32:10.5062775Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-16T19:32:10.5394911Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-16T19:32:10.5395459Z env: 2021-05-16T19:32:10.5395950Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:32:10.5396453Z TIC_DEPLOY_KEY: 2021-05-16T19:32:10.5397448Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:32:10.5399277Z GITHUB_PAT: *** 2021-05-16T19:32:10.5399687Z COVERALLS_TOKEN: 2021-05-16T19:32:10.5400173Z continue-on-error: true 2021-05-16T19:32:10.5400776Z VDIFFR_RUN_TESTS: 2021-05-16T19:32:10.5401282Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:32:10.5401723Z TZ: UTC 2021-05-16T19:32:10.5402127Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:32:10.5402541Z NOT_CRAN: true 2021-05-16T19:32:10.5402925Z ##[endgroup] 2021-05-16T19:32:10.5951780Z [command]sudo apt-get install -y texinfo 2021-05-16T19:32:10.7786217Z Reading package lists... 2021-05-16T19:32:10.9286696Z Building dependency tree... 2021-05-16T19:32:10.9303181Z Reading state information... 2021-05-16T19:32:11.1393133Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-16T19:32:11.1394669Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:11.3682894Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-16T19:32:11.3914254Z --2021-05-16 19:32:11-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-16T19:32:11.4083672Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-16T19:32:11.4153199Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-16T19:32:11.4574691Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-16T19:32:11.4582702Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-16T19:32:11.4586631Z --2021-05-16 19:32:11-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-16T19:32:11.4826292Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-16T19:32:11.5416103Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-16T19:32:11.7538524Z HTTP request sent, awaiting response... 302 Found 2021-05-16T19:32:11.7542207Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1549/grr7rkdr54m0yum8/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=2EoyvUW98ivlzbV1b3%2F%2BXFfkK16YudJAOBYkG0LHlXg%3D&st=2021-05-16T19%3A31%3A11Z&se=2021-05-16T19%3A37%3A11Z&sp=r [following] 2021-05-16T19:32:11.7546528Z --2021-05-16 19:32:11-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1549/grr7rkdr54m0yum8/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=2EoyvUW98ivlzbV1b3%2F%2BXFfkK16YudJAOBYkG0LHlXg%3D&st=2021-05-16T19%3A31%3A11Z&se=2021-05-16T19%3A37%3A11Z&sp=r 2021-05-16T19:32:11.7722376Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-16T19:32:11.8343848Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-16T19:32:12.1211638Z HTTP request sent, awaiting response... 200 OK 2021-05-16T19:32:12.1214075Z Length: 67310420 (64M) [application/octet-stream] 2021-05-16T19:32:12.1217004Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-16T19:32:12.7409340Z 2021-05-16T19:32:14.3297965Z 0K ........ ........ ........ ........ 49% 15.1M 2s 2021-05-16T19:32:16.6424163Z 32768K ........ ........ ........ ........ 99% 19.4M 0s 2021-05-16T19:32:16.6426020Z 65536K 100% 3.03M=3.8s 2021-05-16T19:32:16.6426518Z 2021-05-16T19:32:16.6428103Z 2021-05-16 19:32:15 (16.8 MB/s) - ‘TinyTeX.tar.gz’ saved [67310420/67310420] 2021-05-16T19:32:16.6428752Z 2021-05-16T19:32:18.0115710Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-16T19:32:18.0117106Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-16T19:32:18.3108739Z ##[group]Run tlmgr update --self 2021-05-16T19:32:18.3109398Z tlmgr update --self 2021-05-16T19:32:18.3110381Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-16T19:32:18.3111317Z tlmgr update --all 2021-05-16T19:32:18.3156518Z shell: /usr/bin/bash -e {0} 2021-05-16T19:32:18.3156936Z env: 2021-05-16T19:32:18.3157380Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:32:18.3157870Z TIC_DEPLOY_KEY: 2021-05-16T19:32:18.3158710Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:32:18.3160713Z GITHUB_PAT: *** 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2021-05-16T19:32:24.0294532Z [18/89, 00:02/00:02] install: cstypo [3k] 2021-05-16T19:32:24.0717921Z [19/89, 00:03/00:03] install: ctablestack [2k] 2021-05-16T19:32:24.1131865Z [20/89, 00:03/00:03] install: ekdosis [19k] 2021-05-16T19:32:24.1588779Z [21/89, 00:03/00:03] install: emoji [40k] 2021-05-16T19:32:24.2090519Z [22/89, 00:03/00:03] install: emojicite [2k] 2021-05-16T19:32:24.2516136Z [23/89, 00:03/00:03] install: enctex [24k] 2021-05-16T19:32:24.2966671Z [24/89, 00:03/00:03] install: enigma [18k] 2021-05-16T19:32:24.3429141Z [25/89, 00:03/00:03] install: etex-pkg [6k] 2021-05-16T19:32:24.3867753Z [26/89, 00:03/00:03] install: filecontents [3k] 2021-05-16T19:32:24.4321698Z [27/89, 00:03/00:03] install: grfext [3k] 2021-05-16T19:32:24.4770478Z [28/89, 00:03/00:03] install: hyphenex [9k] 2021-05-16T19:32:24.5238190Z [29/89, 00:03/00:03] install: ifplatform [2k] 2021-05-16T19:32:24.5708768Z [30/89, 00:03/00:03] install: innerscript [4k] 2021-05-16T19:32:24.6186477Z [31/89, 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luaindex [5k] 2021-05-16T19:32:25.2719964Z [45/89, 00:04/00:04] install: luainputenc [5k] 2021-05-16T19:32:25.3162543Z [46/89, 00:04/00:04] install: luaintro [1k] 2021-05-16T19:32:25.3647675Z [47/89, 00:04/00:04] install: luakeys [5k] 2021-05-16T19:32:25.4180482Z [48/89, 00:04/00:04] install: lualatex-doc [1k] 2021-05-16T19:32:25.4627406Z [49/89, 00:04/00:04] install: lualatex-truncate [2k] 2021-05-16T19:32:25.5067020Z [50/89, 00:04/00:04] install: luamplib [12k] 2021-05-16T19:32:25.5558044Z [51/89, 00:04/00:04] install: luapackageloader [2k] 2021-05-16T19:32:25.6047430Z [52/89, 00:04/00:04] install: luaprogtable [7k] 2021-05-16T19:32:25.6503246Z [53/89, 00:04/00:04] install: luarandom [2k] 2021-05-16T19:32:25.6965604Z [54/89, 00:04/00:04] install: luatex85 [2k] 2021-05-16T19:32:25.7412153Z [55/89, 00:04/00:04] install: luatexbase [4k] 2021-05-16T19:32:25.7858393Z [56/89, 00:04/00:04] install: luatexko [22k] 2021-05-16T19:32:25.8334681Z [57/89, 00:04/00:04] install: luatextra [2k] 2021-05-16T19:32:25.8795245Z [58/89, 00:04/00:04] install: luavlna [8k] 2021-05-16T19:32:25.9276427Z [59/89, 00:04/00:04] install: luaxml [31k] 2021-05-16T19:32:25.9749708Z [60/89, 00:04/00:04] install: makeindex.x86_64-linux [49k] 2021-05-16T19:32:26.0241735Z [61/89, 00:04/00:04] install: makeindex [5k] 2021-05-16T19:32:26.0743913Z [62/89, 00:05/00:05] install: mflogo [2k] 2021-05-16T19:32:26.1210051Z [63/89, 00:05/00:05] install: newpax [9k] 2021-05-16T19:32:26.1671192Z [64/89, 00:05/00:05] install: nodetree [13k] 2021-05-16T19:32:26.2138073Z [65/89, 00:05/00:05] install: odsfile [5k] 2021-05-16T19:32:26.2609893Z [66/89, 00:05/00:05] install: optex.x86_64-linux [1k] 2021-05-16T19:32:26.3326018Z [67/89, 00:05/00:05] install: optex [770k] 2021-05-16T19:32:26.4181414Z [68/89, 00:05/00:05] install: pdfarticle [4k] 2021-05-16T19:32:26.4652299Z [69/89, 00:05/00:05] install: pdfextra [22k] 2021-05-16T19:32:26.5131944Z [70/89, 00:05/00:05] install: placeat [4k] 2021-05-16T19:32:26.5652638Z [71/89, 00:05/00:05] install: plantuml [3k] 2021-05-16T19:32:26.6114241Z [72/89, 00:05/00:05] install: rsfs [55k] 2021-05-16T19:32:26.6623901Z [73/89, 00:05/00:05] install: selnolig [53k] 2021-05-16T19:32:26.7153668Z [74/89, 00:05/00:05] install: spelling [14k] 2021-05-16T19:32:26.7604939Z [75/89, 00:05/00:05] install: stricttex [2k] 2021-05-16T19:32:26.8035080Z [76/89, 00:05/00:05] install: texlive-common [1k] 2021-05-16T19:32:26.8514947Z [77/89, 00:05/00:05] install: texlive-en [1k] 2021-05-16T19:32:26.9008236Z [78/89, 00:05/00:05] install: texlive-msg-translations [144k] 2021-05-16T19:32:26.9621677Z [79/89, 00:05/00:05] install: thumbpdf.x86_64-linux [1k] 2021-05-16T19:32:27.0081252Z [80/89, 00:05/00:05] install: thumbpdf [19k] 2021-05-16T19:32:27.0602806Z [81/89, 00:06/00:06] install: tlshell.x86_64-linux [1k] 2021-05-16T19:32:27.1049081Z [82/89, 00:06/00:06] install: tlshell [29k] 2021-05-16T19:32:27.1536198Z [83/89, 00:06/00:06] install: typewriter [25k] 2021-05-16T19:32:27.2012521Z [84/89, 00:06/00:06] install: uninormalize [6k] 2021-05-16T19:32:27.2470230Z [85/89, 00:06/00:06] install: upquote [2k] 2021-05-16T19:32:27.2990931Z [86/89, 00:06/00:06] install: xdvi.x86_64-linux [530k] 2021-05-16T19:32:27.3968796Z [87/89, 00:06/00:06] install: xdvi [7k] 2021-05-16T19:32:27.4413959Z [88/89, 00:06/00:06] install: collection-basic [1k] 2021-05-16T19:32:27.4861703Z [89/89, 00:06/00:06] install: collection-luatex [1k] 2021-05-16T19:32:27.5049741Z running mktexlsr ... 2021-05-16T19:32:27.5891801Z done running mktexlsr. 2021-05-16T19:32:27.6199269Z running updmap-sys ... 2021-05-16T19:32:27.9125440Z done running updmap-sys. 2021-05-16T19:32:27.9127070Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-05-16T19:32:27.9129296Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/vWjJFPjlPw/KhRIe56B2a ... 2021-05-16T19:32:28.3182524Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/vWjJFPjlPw/KhRIe56B2a. 2021-05-16T19:32:28.3184469Z OK: optex.fmt/luatex 2021-05-16T19:32:28.3186149Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-16T19:32:28.3187669Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-16T19:32:29.6745355Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-16T19:32:29.6748180Z tlmgr: no updates available 2021-05-16T19:32:29.7881209Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-16T19:32:29.7881852Z with: 2021-05-16T19:32:29.7882351Z pandoc-version: 2.7.3 2021-05-16T19:32:29.7882885Z env: 2021-05-16T19:32:29.7883394Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:32:29.7884012Z TIC_DEPLOY_KEY: 2021-05-16T19:32:29.7884944Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:32:29.7887013Z GITHUB_PAT: *** 2021-05-16T19:32:29.7887502Z COVERALLS_TOKEN: 2021-05-16T19:32:29.7888119Z continue-on-error: true 2021-05-16T19:32:29.7888721Z VDIFFR_RUN_TESTS: 2021-05-16T19:32:29.7889296Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:32:29.7889980Z TZ: UTC 2021-05-16T19:32:29.7890420Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:32:29.7890921Z NOT_CRAN: true 2021-05-16T19:32:29.7891331Z ##[endgroup] 2021-05-16T19:32:30.2843731Z [command]sudo apt-get install -y gdebi-core 2021-05-16T19:32:30.3568240Z Reading package lists... 2021-05-16T19:32:30.5234122Z Building dependency tree... 2021-05-16T19:32:30.5252100Z Reading state information... 2021-05-16T19:32:30.7607939Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-16T19:32:30.7609170Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:30.7638021Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-16T19:32:30.8857168Z 2021-05-16T19:32:30.9018159Z Reading package lists... 0% 2021-05-16T19:32:30.9018556Z 2021-05-16T19:32:30.9066475Z Reading package lists... 100% 2021-05-16T19:32:30.9066870Z 2021-05-16T19:32:30.9067102Z 2021-05-16T19:32:30.9067599Z Reading package lists... Done 2021-05-16T19:32:30.9067940Z 2021-05-16T19:32:30.9068409Z Building dependency tree... 0% 2021-05-16T19:32:30.9068923Z 2021-05-16T19:32:30.9351620Z Building dependency tree... 0% 2021-05-16T19:32:30.9352327Z 2021-05-16T19:32:30.9353704Z Building dependency tree... 50% 2021-05-16T19:32:30.9354494Z 2021-05-16T19:32:31.0899650Z Building dependency tree... 50% 2021-05-16T19:32:31.0900315Z 2021-05-16T19:32:31.0901102Z Building dependency tree 2021-05-16T19:32:31.0901615Z 2021-05-16T19:32:31.0902328Z Reading state information... 0% 2021-05-16T19:32:31.0902854Z 2021-05-16T19:32:31.2616724Z Reading state information... 0% 2021-05-16T19:32:31.2617124Z 2021-05-16T19:32:31.2617357Z 2021-05-16T19:32:31.2617858Z Reading state information... Done 2021-05-16T19:32:31.2618235Z 2021-05-16T19:32:31.2618729Z Reading state information... 0% 2021-05-16T19:32:31.2677759Z 2021-05-16T19:32:31.2678355Z Reading state information... 1% 2021-05-16T19:32:31.2718589Z 2021-05-16T19:32:31.2719127Z Reading state information... 3% 2021-05-16T19:32:31.2762052Z 2021-05-16T19:32:31.2762589Z Reading state information... 5% 2021-05-16T19:32:31.2846497Z 2021-05-16T19:32:31.2847072Z Reading state information... 7% 2021-05-16T19:32:31.2847567Z 2021-05-16T19:32:31.2848085Z Reading state information... 9% 2021-05-16T19:32:31.2889816Z 2021-05-16T19:32:31.2890426Z Reading state information... 11% 2021-05-16T19:32:31.2931275Z 2021-05-16T19:32:31.2931871Z Reading state information... 13% 2021-05-16T19:32:31.2975181Z 2021-05-16T19:32:31.2975779Z Reading state information... 15% 2021-05-16T19:32:31.3016007Z 2021-05-16T19:32:31.3016610Z Reading state information... 17% 2021-05-16T19:32:31.3062119Z 2021-05-16T19:32:31.3062678Z Reading state information... 19% 2021-05-16T19:32:31.3102095Z 2021-05-16T19:32:31.3102671Z Reading state information... 21% 2021-05-16T19:32:31.3141798Z 2021-05-16T19:32:31.3142385Z Reading state information... 23% 2021-05-16T19:32:31.3188355Z 2021-05-16T19:32:31.3188938Z Reading state information... 25% 2021-05-16T19:32:31.3234097Z 2021-05-16T19:32:31.3234634Z Reading state information... 27% 2021-05-16T19:32:31.3279561Z 2021-05-16T19:32:31.3280320Z Reading state information... 29% 2021-05-16T19:32:31.3324653Z 2021-05-16T19:32:31.3325255Z Reading state information... 31% 2021-05-16T19:32:31.3371148Z 2021-05-16T19:32:31.3371948Z Reading state information... 33% 2021-05-16T19:32:31.3408376Z 2021-05-16T19:32:31.3408942Z Reading state information... 35% 2021-05-16T19:32:31.3445824Z 2021-05-16T19:32:31.3446403Z Reading state information... 37% 2021-05-16T19:32:31.3493323Z 2021-05-16T19:32:31.3493899Z Reading state information... 39% 2021-05-16T19:32:31.3536861Z 2021-05-16T19:32:31.3537398Z Reading state information... 41% 2021-05-16T19:32:31.3576876Z 2021-05-16T19:32:31.3577452Z Reading state information... 43% 2021-05-16T19:32:31.3622645Z 2021-05-16T19:32:31.3623238Z Reading state information... 45% 2021-05-16T19:32:31.3690837Z 2021-05-16T19:32:31.3691387Z Reading state information... 47% 2021-05-16T19:32:31.3728138Z 2021-05-16T19:32:31.3729151Z Reading state information... 49% 2021-05-16T19:32:31.3781386Z 2021-05-16T19:32:31.3782036Z Reading state information... 51% 2021-05-16T19:32:31.3824458Z 2021-05-16T19:32:31.3825033Z Reading state information... 53% 2021-05-16T19:32:31.3867386Z 2021-05-16T19:32:31.3867993Z Reading state information... 55% 2021-05-16T19:32:31.3912946Z 2021-05-16T19:32:31.3913507Z Reading state information... 57% 2021-05-16T19:32:31.3958316Z 2021-05-16T19:32:31.3958895Z Reading state information... 59% 2021-05-16T19:32:31.4008636Z 2021-05-16T19:32:31.4009147Z Reading state information... 61% 2021-05-16T19:32:31.4053631Z 2021-05-16T19:32:31.4054187Z Reading state information... 63% 2021-05-16T19:32:31.4096633Z 2021-05-16T19:32:31.4097396Z Reading state information... 65% 2021-05-16T19:32:31.4138455Z 2021-05-16T19:32:31.4138980Z Reading state information... 67% 2021-05-16T19:32:31.4179932Z 2021-05-16T19:32:31.4180439Z Reading state information... 69% 2021-05-16T19:32:31.4233306Z 2021-05-16T19:32:31.4233814Z Reading state information... 71% 2021-05-16T19:32:31.4272578Z 2021-05-16T19:32:31.4273157Z Reading state information... 73% 2021-05-16T19:32:31.4313879Z 2021-05-16T19:32:31.4314429Z Reading state information... 75% 2021-05-16T19:32:31.4365281Z 2021-05-16T19:32:31.4365890Z Reading state information... 77% 2021-05-16T19:32:31.4405063Z 2021-05-16T19:32:31.4405624Z Reading state information... 79% 2021-05-16T19:32:31.4443004Z 2021-05-16T19:32:31.4443562Z Reading state information... 81% 2021-05-16T19:32:31.4485431Z 2021-05-16T19:32:31.4485899Z Reading state information... 83% 2021-05-16T19:32:31.4523150Z 2021-05-16T19:32:31.4523689Z Reading state information... 85% 2021-05-16T19:32:31.4565453Z 2021-05-16T19:32:31.4566468Z Reading state information... 87% 2021-05-16T19:32:31.4598792Z 2021-05-16T19:32:31.4599420Z Reading state information... 89% 2021-05-16T19:32:31.4635872Z 2021-05-16T19:32:31.4636527Z Reading state information... 91% 2021-05-16T19:32:31.4673446Z 2021-05-16T19:32:31.4674082Z Reading state information... 93% 2021-05-16T19:32:31.4714694Z 2021-05-16T19:32:31.4715298Z Reading state information... 95% 2021-05-16T19:32:31.4758637Z 2021-05-16T19:32:31.4759456Z Reading state information... 97% 2021-05-16T19:32:31.4797773Z 2021-05-16T19:32:31.4798366Z Reading state information... 99% 2021-05-16T19:32:31.7480862Z Selecting previously unselected package pandoc. 2021-05-16T19:32:31.8691488Z (Reading database ... 261973 files and directories currently installed.) 2021-05-16T19:32:31.8793932Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-16T19:32:31.8811534Z Unpacking pandoc (2.7.3-1) ... 2021-05-16T19:32:34.3044369Z Setting up pandoc (2.7.3-1) ... 2021-05-16T19:32:34.3139251Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:32:35.0936969Z 2021-05-16T19:32:35.0938231Z 2021-05-16T19:32:35.0939337Z Reading state information... Done 2021-05-16T19:32:35.1292496Z ##[group]Run git config user.name adigherman 2021-05-16T19:32:35.1293241Z git config user.name adigherman 2021-05-16T19:32:35.1293873Z git config user.email adig@jhu.edu 2021-05-16T19:32:35.1338141Z shell: /usr/bin/bash -e {0} 2021-05-16T19:32:35.1338559Z env: 2021-05-16T19:32:35.1339034Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:32:35.1339522Z TIC_DEPLOY_KEY: 2021-05-16T19:32:35.1340379Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:32:35.1342303Z GITHUB_PAT: *** 2021-05-16T19:32:35.1342746Z COVERALLS_TOKEN: 2021-05-16T19:32:35.1343253Z continue-on-error: true 2021-05-16T19:32:35.1343753Z VDIFFR_RUN_TESTS: 2021-05-16T19:32:35.1344252Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:32:35.1344725Z TZ: UTC 2021-05-16T19:32:35.1345138Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:32:35.1345560Z NOT_CRAN: true 2021-05-16T19:32:35.1346165Z ##[endgroup] 2021-05-16T19:32:35.1594845Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-16T19:32:35.1595544Z env: 2021-05-16T19:32:35.1596039Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:32:35.1596557Z TIC_DEPLOY_KEY: 2021-05-16T19:32:35.1597446Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:32:35.1599308Z GITHUB_PAT: *** 2021-05-16T19:32:35.1599745Z COVERALLS_TOKEN: 2021-05-16T19:32:35.1600276Z continue-on-error: true 2021-05-16T19:32:35.1600785Z VDIFFR_RUN_TESTS: 2021-05-16T19:32:35.1601319Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:32:35.1601812Z TZ: UTC 2021-05-16T19:32:35.1602224Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:32:35.1602678Z NOT_CRAN: true 2021-05-16T19:32:35.1603079Z ##[endgroup] 2021-05-16T19:32:35.4921384Z Reading package lists... 2021-05-16T19:32:35.6533791Z Building dependency tree... 2021-05-16T19:32:35.6553406Z Reading state information... 2021-05-16T19:32:35.7930452Z The following additional packages will be installed: 2021-05-16T19:32:35.7935426Z cmake-data libjsoncpp1 librhash0 2021-05-16T19:32:35.7940594Z Suggested packages: 2021-05-16T19:32:35.7941710Z cmake-doc ninja-build 2021-05-16T19:32:35.8424687Z The following NEW packages will be installed: 2021-05-16T19:32:35.8433187Z cmake cmake-data libjsoncpp1 librhash0 2021-05-16T19:32:35.8653208Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:35.8654037Z Need to get 5470 kB of archives. 2021-05-16T19:32:35.8654843Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-16T19:32:35.8656857Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-16T19:32:35.8917225Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-16T19:32:35.8928874Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-16T19:32:35.8946191Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-16T19:32:36.3532693Z Fetched 5470 kB in 0s (66.1 MB/s) 2021-05-16T19:32:36.3963987Z Selecting previously unselected package cmake-data. 2021-05-16T19:32:36.4031188Z (Reading database ... 2021-05-16T19:32:36.4032056Z (Reading database ... 5% 2021-05-16T19:32:36.4033006Z (Reading database ... 10% 2021-05-16T19:32:36.4033709Z (Reading database ... 15% 2021-05-16T19:32:36.4034380Z (Reading database ... 20% 2021-05-16T19:32:36.4035057Z (Reading database ... 25% 2021-05-16T19:32:36.4035719Z (Reading database ... 30% 2021-05-16T19:32:36.4036396Z (Reading database ... 35% 2021-05-16T19:32:36.4037076Z (Reading database ... 40% 2021-05-16T19:32:36.4037737Z (Reading database ... 45% 2021-05-16T19:32:36.4038413Z (Reading database ... 50% 2021-05-16T19:32:36.4069562Z (Reading database ... 55% 2021-05-16T19:32:36.4104891Z (Reading database ... 60% 2021-05-16T19:32:36.4139982Z (Reading database ... 65% 2021-05-16T19:32:36.4256858Z (Reading database ... 70% 2021-05-16T19:32:36.4360865Z (Reading database ... 75% 2021-05-16T19:32:36.4625413Z (Reading database ... 80% 2021-05-16T19:32:36.4905471Z (Reading database ... 85% 2021-05-16T19:32:36.5039135Z (Reading database ... 90% 2021-05-16T19:32:36.5111410Z (Reading database ... 95% 2021-05-16T19:32:36.5112001Z (Reading database ... 100% 2021-05-16T19:32:36.5113087Z (Reading database ... 261980 files and directories currently installed.) 2021-05-16T19:32:36.5211828Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-16T19:32:36.5481784Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-16T19:32:37.0874501Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-16T19:32:37.1114995Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-16T19:32:37.1140998Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-16T19:32:37.1532109Z Selecting previously unselected package librhash0:amd64. 2021-05-16T19:32:37.1812169Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-16T19:32:37.1838935Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-16T19:32:37.2239340Z Selecting previously unselected package cmake. 2021-05-16T19:32:37.2516995Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-16T19:32:37.2535068Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-16T19:32:37.7033695Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-16T19:32:37.7110485Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-16T19:32:37.7585262Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-16T19:32:37.7651848Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-16T19:32:37.7740623Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:32:38.9184067Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:32:41.0585605Z Reading package lists... 2021-05-16T19:32:41.2140474Z Building dependency tree... 2021-05-16T19:32:41.2160025Z Reading state information... 2021-05-16T19:32:41.3656613Z Suggested packages: 2021-05-16T19:32:41.3658450Z libssh-doc 2021-05-16T19:32:41.4118806Z The following NEW packages will be installed: 2021-05-16T19:32:41.4121605Z libssh-dev 2021-05-16T19:32:41.4341969Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:41.4343284Z Need to get 219 kB of archives. 2021-05-16T19:32:41.4345245Z After this operation, 1127 kB of additional disk space will be used. 2021-05-16T19:32:41.4347244Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-16T19:32:41.8650737Z Fetched 219 kB in 0s (9415 kB/s) 2021-05-16T19:32:41.8965324Z Selecting previously unselected package libssh-dev:amd64. 2021-05-16T19:32:41.9040874Z (Reading database ... 2021-05-16T19:32:41.9041804Z (Reading database ... 5% 2021-05-16T19:32:41.9042569Z (Reading database ... 10% 2021-05-16T19:32:41.9043308Z (Reading database ... 15% 2021-05-16T19:32:41.9044048Z (Reading database ... 20% 2021-05-16T19:32:41.9044835Z (Reading database ... 25% 2021-05-16T19:32:41.9045583Z (Reading database ... 30% 2021-05-16T19:32:41.9046324Z (Reading database ... 35% 2021-05-16T19:32:41.9047040Z (Reading database ... 40% 2021-05-16T19:32:41.9047770Z (Reading database ... 45% 2021-05-16T19:32:41.9048498Z (Reading database ... 50% 2021-05-16T19:32:41.9083061Z (Reading database ... 55% 2021-05-16T19:32:41.9124554Z (Reading database ... 60% 2021-05-16T19:32:41.9163590Z (Reading database ... 65% 2021-05-16T19:32:41.9292285Z (Reading database ... 70% 2021-05-16T19:32:41.9407107Z (Reading database ... 75% 2021-05-16T19:32:41.9693811Z (Reading database ... 80% 2021-05-16T19:32:42.0014997Z (Reading database ... 85% 2021-05-16T19:32:42.0165886Z (Reading database ... 90% 2021-05-16T19:32:42.0247472Z (Reading database ... 95% 2021-05-16T19:32:42.0248059Z (Reading database ... 100% 2021-05-16T19:32:42.0248896Z (Reading database ... 264764 files and directories currently installed.) 2021-05-16T19:32:42.0362449Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-16T19:32:42.0401272Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-16T19:32:42.1444707Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-16T19:32:44.2665897Z Reading package lists... 2021-05-16T19:32:44.4154701Z Building dependency tree... 2021-05-16T19:32:44.4173052Z Reading state information... 2021-05-16T19:32:44.6162722Z The following NEW packages will be installed: 2021-05-16T19:32:44.6167732Z jags 2021-05-16T19:32:44.6676121Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:44.6678205Z Need to get 1562 kB of archives. 2021-05-16T19:32:44.6680009Z After this operation, 3615 kB of additional disk space will be used. 2021-05-16T19:32:44.6683598Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-16T19:32:45.1341954Z Fetched 1562 kB in 0s (16.4 MB/s) 2021-05-16T19:32:45.1681953Z Selecting previously unselected package jags. 2021-05-16T19:32:45.1753750Z (Reading database ... 2021-05-16T19:32:45.1754651Z (Reading database ... 5% 2021-05-16T19:32:45.1755428Z (Reading database ... 10% 2021-05-16T19:32:45.1756114Z (Reading database ... 15% 2021-05-16T19:32:45.1756785Z (Reading database ... 20% 2021-05-16T19:32:45.1757473Z (Reading database ... 25% 2021-05-16T19:32:45.1758136Z (Reading database ... 30% 2021-05-16T19:32:45.1758811Z (Reading database ... 35% 2021-05-16T19:32:45.1759493Z (Reading database ... 40% 2021-05-16T19:32:45.1760373Z (Reading database ... 45% 2021-05-16T19:32:45.1761105Z (Reading database ... 50% 2021-05-16T19:32:45.1793909Z (Reading database ... 55% 2021-05-16T19:32:45.1830785Z (Reading database ... 60% 2021-05-16T19:32:45.1868439Z (Reading database ... 65% 2021-05-16T19:32:45.1993620Z (Reading database ... 70% 2021-05-16T19:32:45.2108772Z (Reading database ... 75% 2021-05-16T19:32:45.2382239Z (Reading database ... 80% 2021-05-16T19:32:45.2686385Z (Reading database ... 85% 2021-05-16T19:32:45.2828565Z (Reading database ... 90% 2021-05-16T19:32:45.2905622Z (Reading database ... 95% 2021-05-16T19:32:45.2906311Z (Reading database ... 100% 2021-05-16T19:32:45.2907313Z (Reading database ... 264783 files and directories currently installed.) 2021-05-16T19:32:45.3012509Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-16T19:32:45.3043089Z Unpacking jags (4.3.0-3build1) ... 2021-05-16T19:32:45.4813041Z Setting up jags (4.3.0-3build1) ... 2021-05-16T19:32:45.5066746Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:32:46.2461338Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:32:48.4139046Z Reading package lists... 2021-05-16T19:32:48.5715049Z Building dependency tree... 2021-05-16T19:32:48.5733409Z Reading state information... 2021-05-16T19:32:48.7232363Z The following additional packages will be installed: 2021-05-16T19:32:48.7234887Z libnode64 libuv1-dev 2021-05-16T19:32:48.7688410Z The following NEW packages will be installed: 2021-05-16T19:32:48.7690970Z libnode-dev libnode64 libuv1-dev 2021-05-16T19:32:48.7899402Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:48.7900174Z Need to get 6239 kB of archives. 2021-05-16T19:32:48.7900923Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-16T19:32:48.7903347Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-16T19:32:48.7935337Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-16T19:32:48.8890767Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-16T19:32:49.2950224Z Fetched 6239 kB in 0s (51.6 MB/s) 2021-05-16T19:32:49.3252599Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-16T19:32:49.3324824Z (Reading database ... 2021-05-16T19:32:49.3325431Z (Reading database ... 5% 2021-05-16T19:32:49.3325964Z (Reading database ... 10% 2021-05-16T19:32:49.3326589Z (Reading database ... 15% 2021-05-16T19:32:49.3327104Z (Reading database ... 20% 2021-05-16T19:32:49.3327788Z (Reading database ... 25% 2021-05-16T19:32:49.3328288Z (Reading database ... 30% 2021-05-16T19:32:49.3328772Z (Reading database ... 35% 2021-05-16T19:32:49.3329267Z (Reading database ... 40% 2021-05-16T19:32:49.3329748Z (Reading database ... 45% 2021-05-16T19:32:49.3330247Z (Reading database ... 50% 2021-05-16T19:32:49.3364143Z (Reading database ... 55% 2021-05-16T19:32:49.3400576Z (Reading database ... 60% 2021-05-16T19:32:49.3439511Z (Reading database ... 65% 2021-05-16T19:32:49.3561676Z (Reading database ... 70% 2021-05-16T19:32:49.3668727Z (Reading database ... 75% 2021-05-16T19:32:49.3932676Z (Reading database ... 80% 2021-05-16T19:32:49.4224827Z (Reading database ... 85% 2021-05-16T19:32:49.4367386Z (Reading database ... 90% 2021-05-16T19:32:49.4440285Z (Reading database ... 95% 2021-05-16T19:32:49.4441654Z (Reading database ... 100% 2021-05-16T19:32:49.4443398Z (Reading database ... 264923 files and directories currently installed.) 2021-05-16T19:32:49.4543872Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-16T19:32:49.4591273Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-16T19:32:49.5011245Z Selecting previously unselected package libnode64:amd64. 2021-05-16T19:32:49.5276818Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T19:32:49.5315457Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T19:32:50.2154819Z Selecting previously unselected package libnode-dev:amd64. 2021-05-16T19:32:50.2377515Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T19:32:50.2392055Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T19:32:50.3348642Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-16T19:32:50.3472999Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T19:32:50.3584048Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T19:32:50.3639673Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:32:52.5097139Z Reading package lists... 2021-05-16T19:32:52.6690641Z Building dependency tree... 2021-05-16T19:32:52.6706452Z Reading state information... 2021-05-16T19:32:52.8212783Z The following additional packages will be installed: 2021-05-16T19:32:52.8217592Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-16T19:32:52.8219167Z Suggested packages: 2021-05-16T19:32:52.8220466Z libfftw3-doc 2021-05-16T19:32:52.8662797Z The following NEW packages will be installed: 2021-05-16T19:32:52.8670432Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-16T19:32:52.9096819Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:52.9097672Z Need to get 3986 kB of archives. 2021-05-16T19:32:52.9098556Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-16T19:32:52.9100404Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-16T19:32:52.9209073Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-16T19:32:52.9324799Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-16T19:32:52.9422809Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-16T19:32:52.9436351Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-16T19:32:53.4129643Z Fetched 3986 kB in 0s (38.3 MB/s) 2021-05-16T19:32:53.4527824Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-16T19:32:53.4601589Z (Reading database ... 2021-05-16T19:32:53.4602213Z (Reading database ... 5% 2021-05-16T19:32:53.4602713Z (Reading database ... 10% 2021-05-16T19:32:53.4603224Z (Reading database ... 15% 2021-05-16T19:32:53.4603718Z (Reading database ... 20% 2021-05-16T19:32:53.4604223Z (Reading database ... 25% 2021-05-16T19:32:53.4604746Z (Reading database ... 30% 2021-05-16T19:32:53.4605373Z (Reading database ... 35% 2021-05-16T19:32:53.4605877Z (Reading database ... 40% 2021-05-16T19:32:53.4606364Z (Reading database ... 45% 2021-05-16T19:32:53.4606863Z (Reading database ... 50% 2021-05-16T19:32:53.4640904Z (Reading database ... 55% 2021-05-16T19:32:53.4677180Z (Reading database ... 60% 2021-05-16T19:32:53.4715577Z (Reading database ... 65% 2021-05-16T19:32:53.4855658Z (Reading database ... 70% 2021-05-16T19:32:53.4999160Z (Reading database ... 75% 2021-05-16T19:32:53.5377434Z (Reading database ... 80% 2021-05-16T19:32:53.5724099Z (Reading database ... 85% 2021-05-16T19:32:53.5892978Z (Reading database ... 90% 2021-05-16T19:32:53.5980447Z (Reading database ... 95% 2021-05-16T19:32:53.5981293Z (Reading database ... 100% 2021-05-16T19:32:53.5982256Z (Reading database ... 265059 files and directories currently installed.) 2021-05-16T19:32:53.6101369Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T19:32:53.6133677Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:53.6915322Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-16T19:32:53.7203442Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T19:32:53.7224750Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:53.8373759Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-16T19:32:53.8677591Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T19:32:53.8696322Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:53.9795210Z Selecting previously unselected package libfftw3-bin. 2021-05-16T19:32:54.0054584Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T19:32:54.0077758Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.0475165Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-16T19:32:54.0772740Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T19:32:54.0786721Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.3999124Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.4062900Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.4128673Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.4185145Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.4242304Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T19:32:54.4296208Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:32:55.3049690Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:32:57.5821009Z Reading package lists... 2021-05-16T19:32:57.7410907Z Building dependency tree... 2021-05-16T19:32:57.7431000Z Reading state information... 2021-05-16T19:32:57.9005659Z The following additional packages will be installed: 2021-05-16T19:32:57.9006940Z libdcmtk14 2021-05-16T19:32:57.9486991Z The following NEW packages will be installed: 2021-05-16T19:32:57.9495076Z dcmtk libdcmtk14 2021-05-16T19:32:57.9717641Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:32:57.9718457Z Need to get 5546 kB of archives. 2021-05-16T19:32:57.9719709Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-16T19:32:57.9721953Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-16T19:32:58.0371315Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-16T19:32:58.4746754Z Fetched 5546 kB in 0s (60.6 MB/s) 2021-05-16T19:32:58.5111635Z Selecting previously unselected package libdcmtk14. 2021-05-16T19:32:58.5182051Z (Reading database ... 2021-05-16T19:32:58.5182626Z (Reading database ... 5% 2021-05-16T19:32:58.5183126Z (Reading database ... 10% 2021-05-16T19:32:58.5183634Z (Reading database ... 15% 2021-05-16T19:32:58.5184130Z (Reading database ... 20% 2021-05-16T19:32:58.5184660Z (Reading database ... 25% 2021-05-16T19:32:58.5185345Z (Reading database ... 30% 2021-05-16T19:32:58.5185834Z (Reading database ... 35% 2021-05-16T19:32:58.5186340Z (Reading database ... 40% 2021-05-16T19:32:58.5186826Z (Reading database ... 45% 2021-05-16T19:32:58.5187324Z (Reading database ... 50% 2021-05-16T19:32:58.5241550Z (Reading database ... 55% 2021-05-16T19:32:58.5286454Z (Reading database ... 60% 2021-05-16T19:32:58.5330449Z (Reading database ... 65% 2021-05-16T19:32:58.5461879Z (Reading database ... 70% 2021-05-16T19:32:58.5581482Z (Reading database ... 75% 2021-05-16T19:32:58.5906754Z (Reading database ... 80% 2021-05-16T19:32:58.6260865Z (Reading database ... 85% 2021-05-16T19:32:58.6404246Z (Reading database ... 90% 2021-05-16T19:32:58.6484572Z (Reading database ... 95% 2021-05-16T19:32:58.6485503Z (Reading database ... 100% 2021-05-16T19:32:58.6486565Z (Reading database ... 265150 files and directories currently installed.) 2021-05-16T19:32:58.6597878Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-16T19:32:58.6631801Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-16T19:32:59.2370928Z Selecting previously unselected package dcmtk. 2021-05-16T19:32:59.2645063Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-16T19:32:59.2713345Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-16T19:32:59.4387560Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-16T19:32:59.4434671Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-16T19:32:59.4632161Z Adding `dcmtk' group to system ... 2021-05-16T19:32:59.5238505Z Adding `dcmtk' user to system ... 2021-05-16T19:32:59.6705521Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-16T19:32:59.9179314Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:01.6522437Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:03.9305079Z Reading package lists... 2021-05-16T19:33:04.0980243Z Building dependency tree... 2021-05-16T19:33:04.1000439Z Reading state information... 2021-05-16T19:33:04.3478795Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-16T19:33:04.3480119Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:04.4226556Z Reading package lists... 2021-05-16T19:33:04.6216216Z Building dependency tree... 2021-05-16T19:33:04.6235275Z Reading state information... 2021-05-16T19:33:04.8963841Z libpng-dev is already the newest version (1.6.37-2). 2021-05-16T19:33:04.8965256Z libpng-dev set to manually installed. 2021-05-16T19:33:04.8966208Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:04.9665136Z Reading package lists... 2021-05-16T19:33:05.1407845Z Building dependency tree... 2021-05-16T19:33:05.1426755Z Reading state information... 2021-05-16T19:33:05.2962812Z The following additional packages will be installed: 2021-05-16T19:33:05.2970615Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-16T19:33:05.2972041Z Suggested packages: 2021-05-16T19:33:05.2973827Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-16T19:33:05.2975951Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-16T19:33:05.2977548Z fonts-arphic-uming fonts-nanum 2021-05-16T19:33:05.3452393Z The following NEW packages will be installed: 2021-05-16T19:33:05.3454219Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-16T19:33:05.3460306Z libpoppler97 poppler-data 2021-05-16T19:33:05.3671519Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:05.3672344Z Need to get 2582 kB of archives. 2021-05-16T19:33:05.3675145Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-16T19:33:05.3684253Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-16T19:33:05.3992023Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-16T19:33:05.4010552Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-16T19:33:05.4200990Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-16T19:33:05.4207725Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-16T19:33:05.4211118Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-16T19:33:05.8754876Z Fetched 2582 kB in 0s (37.1 MB/s) 2021-05-16T19:33:05.9206741Z Selecting previously unselected package poppler-data. 2021-05-16T19:33:05.9288644Z (Reading database ... 2021-05-16T19:33:05.9289238Z (Reading database ... 5% 2021-05-16T19:33:05.9289736Z (Reading database ... 10% 2021-05-16T19:33:05.9290245Z (Reading database ... 15% 2021-05-16T19:33:05.9290736Z (Reading database ... 20% 2021-05-16T19:33:05.9291416Z (Reading database ... 25% 2021-05-16T19:33:05.9291920Z (Reading database ... 30% 2021-05-16T19:33:05.9292419Z (Reading database ... 35% 2021-05-16T19:33:05.9292904Z (Reading database ... 40% 2021-05-16T19:33:05.9293400Z (Reading database ... 45% 2021-05-16T19:33:05.9293994Z (Reading database ... 50% 2021-05-16T19:33:05.9327679Z (Reading database ... 55% 2021-05-16T19:33:05.9368218Z (Reading database ... 60% 2021-05-16T19:33:05.9405856Z (Reading database ... 65% 2021-05-16T19:33:05.9533535Z (Reading database ... 70% 2021-05-16T19:33:05.9657285Z (Reading database ... 75% 2021-05-16T19:33:05.9959516Z (Reading database ... 80% 2021-05-16T19:33:06.0286405Z (Reading database ... 85% 2021-05-16T19:33:06.0448196Z (Reading database ... 90% 2021-05-16T19:33:06.0529299Z (Reading database ... 95% 2021-05-16T19:33:06.0529876Z (Reading database ... 100% 2021-05-16T19:33:06.0530662Z (Reading database ... 265385 files and directories currently installed.) 2021-05-16T19:33:06.0647815Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-16T19:33:06.0677770Z Unpacking poppler-data (0.4.9-2) ... 2021-05-16T19:33:06.3475996Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-16T19:33:06.3748583Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-16T19:33:06.3791426Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-16T19:33:06.4280484Z Selecting previously unselected package libpoppler97:amd64. 2021-05-16T19:33:06.4535385Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T19:33:06.4575590Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.5955557Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-16T19:33:06.6171857Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T19:33:06.6189483Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.6514386Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-16T19:33:06.6788675Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T19:33:06.6811766Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.7115216Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-16T19:33:06.7372114Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T19:33:06.7387652Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.8177638Z Setting up poppler-data (0.4.9-2) ... 2021-05-16T19:33:06.8320727Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-16T19:33:06.8363835Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.8450125Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.8503681Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.8545454Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T19:33:06.8601842Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T19:33:06.9029843Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:09.1205160Z Reading package lists... 2021-05-16T19:33:09.2862456Z Building dependency tree... 2021-05-16T19:33:09.2881840Z Reading state information... 2021-05-16T19:33:09.4473273Z The following additional packages will be installed: 2021-05-16T19:33:09.4477171Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-16T19:33:09.4483735Z Suggested packages: 2021-05-16T19:33:09.4484569Z libhdf5-doc 2021-05-16T19:33:09.5052366Z The following NEW packages will be installed: 2021-05-16T19:33:09.5059323Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-16T19:33:09.5065627Z libsz2 2021-05-16T19:33:09.5296875Z 0 upgraded, 7 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:09.5297691Z Need to get 4074 kB of archives. 2021-05-16T19:33:09.5298513Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-16T19:33:09.5301053Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-16T19:33:09.5323739Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-16T19:33:09.5326170Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-16T19:33:09.5331725Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-16T19:33:09.5669978Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-16T19:33:09.5689603Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-16T19:33:09.5699305Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-16T19:33:10.0546494Z Fetched 4074 kB in 0s (48.4 MB/s) 2021-05-16T19:33:10.0992021Z Selecting previously unselected package hdf5-helpers. 2021-05-16T19:33:10.1071591Z (Reading database ... 2021-05-16T19:33:10.1072696Z (Reading database ... 5% 2021-05-16T19:33:10.1073424Z (Reading database ... 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2021-05-16T19:33:10.6602942Z (Reading database ... 265945 files and directories currently installed.) 2021-05-16T19:33:10.6604693Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T19:33:10.6616346Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:10.6617712Z Selecting previously unselected package libaec0:amd64. 2021-05-16T19:33:10.6619051Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-16T19:33:10.6620144Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-16T19:33:10.6621156Z Selecting previously unselected package libsz2:amd64. 2021-05-16T19:33:10.6622393Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-16T19:33:10.6623436Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-16T19:33:10.6624680Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-16T19:33:10.6626391Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T19:33:10.6627886Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:10.6629181Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-16T19:33:10.6630795Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T19:33:10.6632265Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:10.6994800Z Selecting previously unselected package libaec-dev:amd64. 2021-05-16T19:33:10.7252158Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-16T19:33:10.7271154Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-16T19:33:10.7676537Z Selecting previously unselected package libhdf5-dev. 2021-05-16T19:33:10.7955303Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T19:33:10.7966669Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:11.1433582Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:11.1473054Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-16T19:33:11.1502325Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-16T19:33:11.1532499Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-16T19:33:11.1561039Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:11.1591120Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:11.1628105Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-16T19:33:11.1727619Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-16T19:33:11.1753915Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:12.0910811Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:14.3343301Z Reading package lists... 2021-05-16T19:33:14.5064799Z Building dependency tree... 2021-05-16T19:33:14.5085938Z Reading state information... 2021-05-16T19:33:14.6883044Z The following additional packages will be installed: 2021-05-16T19:33:14.6888117Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-16T19:33:14.7498773Z The following NEW packages will be installed: 2021-05-16T19:33:14.7506320Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-16T19:33:14.7511614Z mesa-common-dev 2021-05-16T19:33:14.7733770Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:14.7734943Z Need to get 1761 kB of archives. 2021-05-16T19:33:14.7735783Z After this operation, 5442 kB of additional disk space will be used. 2021-05-16T19:33:14.7737708Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-16T19:33:14.7784786Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-16T19:33:14.7789903Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-16T19:33:14.7810579Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-16T19:33:14.7839908Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-16T19:33:14.7871166Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-16T19:33:15.2667631Z Fetched 1761 kB in 0s (39.1 MB/s) 2021-05-16T19:33:15.2992287Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-16T19:33:15.3075387Z (Reading database ... 2021-05-16T19:33:15.3076323Z (Reading database ... 5% 2021-05-16T19:33:15.3077084Z (Reading database ... 10% 2021-05-16T19:33:15.3077828Z (Reading database ... 15% 2021-05-16T19:33:15.3078558Z (Reading database ... 20% 2021-05-16T19:33:15.3079278Z (Reading database ... 25% 2021-05-16T19:33:15.3080032Z (Reading database ... 30% 2021-05-16T19:33:15.3080955Z (Reading database ... 35% 2021-05-16T19:33:15.3081684Z (Reading database ... 40% 2021-05-16T19:33:15.3082413Z (Reading database ... 45% 2021-05-16T19:33:15.3083124Z (Reading database ... 50% 2021-05-16T19:33:15.3118348Z (Reading database ... 55% 2021-05-16T19:33:15.3157900Z (Reading database ... 60% 2021-05-16T19:33:15.3197448Z (Reading database ... 65% 2021-05-16T19:33:15.3334977Z (Reading database ... 70% 2021-05-16T19:33:15.3458329Z (Reading database ... 75% 2021-05-16T19:33:15.3745698Z (Reading database ... 80% 2021-05-16T19:33:15.4081954Z (Reading database ... 85% 2021-05-16T19:33:15.4227360Z (Reading database ... 90% 2021-05-16T19:33:15.4311631Z (Reading database ... 95% 2021-05-16T19:33:15.4312312Z (Reading database ... 100% 2021-05-16T19:33:15.4313401Z (Reading database ... 266153 files and directories currently installed.) 2021-05-16T19:33:15.4423568Z Preparing to unpack .../0-libdrm-dev_2.4.102-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T19:33:15.4439613Z Unpacking libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-16T19:33:15.4995887Z Selecting previously unselected package libglx-dev:amd64. 2021-05-16T19:33:15.5280137Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T19:33:15.5294620Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T19:33:15.5755508Z Selecting previously unselected package libgl-dev:amd64. 2021-05-16T19:33:15.6040310Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T19:33:15.6051924Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T19:33:15.6635671Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-16T19:33:15.6886089Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-16T19:33:15.6918265Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-16T19:33:15.7428263Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-16T19:33:15.7685005Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-16T19:33:15.7697756Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-16T19:33:15.8274942Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-16T19:33:15.8517507Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-16T19:33:15.8530219Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T19:33:16.0301716Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-16T19:33:16.0356612Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T19:33:16.0408073Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-16T19:33:16.0475894Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T19:33:16.0534437Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-16T19:33:16.0567167Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T19:33:16.0603509Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:17.5407373Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:19.7791064Z Reading package lists... 2021-05-16T19:33:19.9473454Z Building dependency tree... 2021-05-16T19:33:19.9493714Z Reading state information... 2021-05-16T19:33:20.1170487Z The following additional packages will be installed: 2021-05-16T19:33:20.1174109Z libprotobuf-lite17 libprotoc17 2021-05-16T19:33:20.1652784Z The following NEW packages will be installed: 2021-05-16T19:33:20.1655257Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-16T19:33:20.1688501Z protobuf-compiler 2021-05-16T19:33:20.1848274Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:20.1849079Z Need to get 2754 kB of archives. 2021-05-16T19:33:20.1849901Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-16T19:33:20.1852688Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-16T19:33:20.1895219Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-16T19:33:20.1997493Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-16T19:33:20.2201757Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-16T19:33:20.2369916Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-16T19:33:20.6990425Z Fetched 2754 kB in 0s (41.0 MB/s) 2021-05-16T19:33:20.7355309Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-16T19:33:20.7434464Z (Reading database ... 2021-05-16T19:33:20.7435241Z (Reading database ... 5% 2021-05-16T19:33:20.7435953Z (Reading database ... 10% 2021-05-16T19:33:20.7436628Z (Reading database ... 15% 2021-05-16T19:33:20.7437348Z (Reading database ... 20% 2021-05-16T19:33:20.7438025Z (Reading database ... 25% 2021-05-16T19:33:20.7438872Z (Reading database ... 30% 2021-05-16T19:33:20.7439587Z (Reading database ... 35% 2021-05-16T19:33:20.7440253Z (Reading database ... 40% 2021-05-16T19:33:20.7440928Z (Reading database ... 45% 2021-05-16T19:33:20.7441595Z (Reading database ... 50% 2021-05-16T19:33:20.7464217Z (Reading database ... 55% 2021-05-16T19:33:20.7501570Z (Reading database ... 60% 2021-05-16T19:33:20.7539828Z (Reading database ... 65% 2021-05-16T19:33:20.7678095Z (Reading database ... 70% 2021-05-16T19:33:20.7804697Z (Reading database ... 75% 2021-05-16T19:33:20.8101315Z (Reading database ... 80% 2021-05-16T19:33:20.8446675Z (Reading database ... 85% 2021-05-16T19:33:20.8599516Z (Reading database ... 90% 2021-05-16T19:33:20.8680905Z (Reading database ... 95% 2021-05-16T19:33:20.8681481Z (Reading database ... 100% 2021-05-16T19:33:20.8682334Z (Reading database ... 266636 files and directories currently installed.) 2021-05-16T19:33:20.8805101Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T19:33:20.8844262Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:20.9354395Z Selecting previously unselected package libprotoc17:amd64. 2021-05-16T19:33:20.9578046Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T19:33:20.9597928Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.0610881Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-16T19:33:21.0910952Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T19:33:21.0936791Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.2795279Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-16T19:33:21.3071286Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T19:33:21.3087705Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.4395254Z Selecting previously unselected package protobuf-compiler. 2021-05-16T19:33:21.4656832Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T19:33:21.4672172Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5305343Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5456359Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5505305Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5543302Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5588432Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T19:33:21.5641334Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:22.3952045Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:24.6807402Z Reading package lists... 2021-05-16T19:33:24.8529417Z Building dependency tree... 2021-05-16T19:33:24.8549334Z Reading state information... 2021-05-16T19:33:25.0241970Z The following additional packages will be installed: 2021-05-16T19:33:25.0246881Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-16T19:33:25.0249766Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-16T19:33:25.0252636Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-16T19:33:25.0255185Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-16T19:33:25.0257703Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-16T19:33:25.0259983Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-16T19:33:25.0262419Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-16T19:33:25.0264925Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-16T19:33:25.0267288Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-16T19:33:25.0271550Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-16T19:33:25.0274831Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-16T19:33:25.0277194Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-16T19:33:25.0279427Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-16T19:33:25.0282675Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-16T19:33:25.0353506Z Suggested packages: 2021-05-16T19:33:25.0355045Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-16T19:33:25.0356445Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-16T19:33:25.0357959Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-16T19:33:25.0359346Z nvidia-legacy-304xx-vdpau-driver 2021-05-16T19:33:25.1037260Z The following NEW packages will be installed: 2021-05-16T19:33:25.1040628Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-16T19:33:25.1043356Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-16T19:33:25.1045667Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-16T19:33:25.1048349Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-16T19:33:25.1051028Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-16T19:33:25.1053770Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-16T19:33:25.1056585Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-16T19:33:25.1059257Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-16T19:33:25.1063179Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-16T19:33:25.1065441Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-16T19:33:25.1067786Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-16T19:33:25.1069931Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-16T19:33:25.1072017Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-16T19:33:25.1074524Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-16T19:33:25.1303350Z 0 upgraded, 76 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:25.1304195Z Need to get 47.1 MB of archives. 2021-05-16T19:33:25.1305625Z After this operation, 195 MB of additional disk space will be used. 2021-05-16T19:33:25.1307676Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-16T19:33:25.1542107Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-16T19:33:25.1554610Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-16T19:33:25.1563326Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-16T19:33:25.1572157Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-16T19:33:25.1580291Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-16T19:33:25.1591103Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-16T19:33:25.1625224Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-16T19:33:25.3481037Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-16T19:33:25.3494241Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-16T19:33:25.3530169Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-16T19:33:25.3557499Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-16T19:33:25.3561729Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-16T19:33:25.3566743Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-16T19:33:25.3576430Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-16T19:33:25.3587694Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-16T19:33:25.3597860Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-16T19:33:25.3616894Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-16T19:33:25.3625537Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-16T19:33:25.3635531Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-16T19:33:25.3978869Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-16T19:33:25.4275763Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-16T19:33:25.4448802Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-16T19:33:25.4484177Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-16T19:33:25.4494917Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-16T19:33:25.4531441Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-16T19:33:25.5267855Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-16T19:33:25.5279519Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-16T19:33:25.5291002Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-16T19:33:25.5306625Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-16T19:33:25.5326451Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-16T19:33:25.5337987Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-16T19:33:25.5355902Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-16T19:33:25.5376047Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-16T19:33:25.5456315Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-16T19:33:25.5492746Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-16T19:33:25.5647682Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-16T19:33:25.5657423Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-16T19:33:25.7645660Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-16T19:33:25.7652541Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-16T19:33:25.7657702Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-16T19:33:25.7662157Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-16T19:33:25.7670982Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-16T19:33:25.7679066Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-16T19:33:25.7691421Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-16T19:33:25.7773504Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-16T19:33:25.7785079Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-16T19:33:25.7806304Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-16T19:33:25.7811781Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-16T19:33:25.7984232Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-16T19:33:25.8008536Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-16T19:33:25.8016332Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-16T19:33:25.8021630Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-16T19:33:25.8026204Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-16T19:33:25.8042324Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-16T19:33:25.8044908Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-16T19:33:25.8068650Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-16T19:33:25.8088739Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-16T19:33:25.8091013Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-16T19:33:25.8138431Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-16T19:33:25.8140755Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-16T19:33:25.8150090Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-16T19:33:25.8176790Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-16T19:33:25.8197992Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-16T19:33:25.8235290Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-16T19:33:25.8246912Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-16T19:33:25.8263708Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-16T19:33:25.8417314Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-16T19:33:25.8427600Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-16T19:33:25.8661529Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-16T19:33:25.8671413Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-16T19:33:25.8686379Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-16T19:33:25.9087722Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-16T19:33:25.9385979Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-16T19:33:25.9464249Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-16T19:33:25.9466241Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-16T19:33:26.6049560Z Fetched 47.1 MB in 1s (56.5 MB/s) 2021-05-16T19:33:26.6396659Z Selecting previously unselected package libaom0:amd64. 2021-05-16T19:33:26.6478055Z (Reading database ... 2021-05-16T19:33:26.6478681Z (Reading database ... 5% 2021-05-16T19:33:26.6479237Z (Reading database ... 10% 2021-05-16T19:33:26.6479777Z (Reading database ... 15% 2021-05-16T19:33:26.6480352Z (Reading database ... 20% 2021-05-16T19:33:26.6480895Z (Reading database ... 25% 2021-05-16T19:33:26.6481437Z (Reading database ... 30% 2021-05-16T19:33:26.6481977Z (Reading database ... 35% 2021-05-16T19:33:26.6482518Z (Reading database ... 40% 2021-05-16T19:33:26.6483044Z (Reading database ... 45% 2021-05-16T19:33:26.6483588Z (Reading database ... 50% 2021-05-16T19:33:26.6532831Z (Reading database ... 55% 2021-05-16T19:33:26.6574422Z (Reading database ... 60% 2021-05-16T19:33:26.6622721Z (Reading database ... 65% 2021-05-16T19:33:26.6761950Z (Reading database ... 70% 2021-05-16T19:33:26.6894085Z (Reading database ... 75% 2021-05-16T19:33:26.7196757Z (Reading database ... 80% 2021-05-16T19:33:26.7563718Z (Reading database ... 85% 2021-05-16T19:33:26.7726437Z (Reading database ... 90% 2021-05-16T19:33:26.7812038Z (Reading database ... 95% 2021-05-16T19:33:26.7813359Z (Reading database ... 100% 2021-05-16T19:33:26.7814911Z (Reading database ... 266807 files and directories currently installed.) 2021-05-16T19:33:26.7937184Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-16T19:33:26.8027542Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-16T19:33:26.9685113Z Selecting previously unselected package libva2:amd64. 2021-05-16T19:33:27.0072753Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-16T19:33:27.0104786Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-16T19:33:27.0501344Z Selecting previously unselected package libva-drm2:amd64. 2021-05-16T19:33:27.0862001Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-16T19:33:27.0877523Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-16T19:33:27.1274598Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-16T19:33:27.1553073Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-16T19:33:27.1564056Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-16T19:33:27.1853543Z Selecting previously unselected package libvdpau1:amd64. 2021-05-16T19:33:27.2154357Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-16T19:33:27.2168603Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-16T19:33:27.2493284Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-16T19:33:27.2807103Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-16T19:33:27.2818249Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-16T19:33:27.3275921Z Selecting previously unselected package libavutil56:amd64. 2021-05-16T19:33:27.3593237Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-16T19:33:27.3610849Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:27.4340235Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-16T19:33:27.4641244Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-16T19:33:27.4655938Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-16T19:33:28.2597755Z Selecting previously unselected package libgsm1:amd64. 2021-05-16T19:33:28.2896912Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-16T19:33:28.2908821Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-16T19:33:28.3236298Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-16T19:33:28.3540581Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-16T19:33:28.3551173Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-16T19:33:28.4074013Z Selecting previously unselected package libopus0:amd64. 2021-05-16T19:33:28.4296994Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-16T19:33:28.4314748Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-16T19:33:28.4874581Z Selecting previously unselected package libshine3:amd64. 2021-05-16T19:33:28.5162588Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-16T19:33:28.5185716Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-16T19:33:28.5506241Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-16T19:33:28.5802431Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-16T19:33:28.5815469Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-16T19:33:28.6159953Z Selecting previously unselected package libspeex1:amd64. 2021-05-16T19:33:28.6464377Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-16T19:33:28.6478917Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-16T19:33:28.6873998Z Selecting previously unselected package libsoxr0:amd64. 2021-05-16T19:33:28.7142875Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-16T19:33:28.7155174Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-16T19:33:28.7544538Z Selecting previously unselected package libswresample3:amd64. 2021-05-16T19:33:28.7838148Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-16T19:33:28.7856061Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:28.8212806Z Selecting previously unselected package libtheora0:amd64. 2021-05-16T19:33:28.8515064Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-16T19:33:28.8529437Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-16T19:33:28.9035171Z Selecting previously unselected package libtwolame0:amd64. 2021-05-16T19:33:28.9307880Z Preparing to unpack .../17-libtwolame0_0.4.0-2_amd64.deb ... 2021-05-16T19:33:28.9323275Z Unpacking libtwolame0:amd64 (0.4.0-2) ... 2021-05-16T19:33:28.9648401Z Selecting previously unselected package libvorbisenc2:amd64. 2021-05-16T19:33:28.9946224Z Preparing to unpack .../18-libvorbisenc2_1.3.6-2ubuntu1_amd64.deb ... 2021-05-16T19:33:28.9961245Z Unpacking libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-16T19:33:29.0418996Z Selecting previously unselected package libwavpack1:amd64. 2021-05-16T19:33:29.0690146Z Preparing to unpack .../19-libwavpack1_5.2.0-1ubuntu0.1_amd64.deb ... 2021-05-16T19:33:29.0702965Z Unpacking libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-16T19:33:29.1070687Z Selecting previously unselected package libx264-155:amd64. 2021-05-16T19:33:29.1376401Z Preparing to unpack .../20-libx264-155_2%3a0.155.2917+git0a84d98-2_amd64.deb ... 2021-05-16T19:33:29.1391375Z Unpacking libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... 2021-05-16T19:33:29.2315305Z Selecting previously unselected package libx265-179:amd64. 2021-05-16T19:33:29.2586534Z Preparing to unpack .../21-libx265-179_3.2.1-1build1_amd64.deb ... 2021-05-16T19:33:29.2598461Z Unpacking libx265-179:amd64 (3.2.1-1build1) ... 2021-05-16T19:33:29.4755021Z Selecting previously unselected package libxvidcore4:amd64. 2021-05-16T19:33:29.5004481Z Preparing to unpack .../22-libxvidcore4_2%3a1.3.7-1_amd64.deb ... 2021-05-16T19:33:29.5022716Z Unpacking libxvidcore4:amd64 (2:1.3.7-1) ... 2021-05-16T19:33:29.5555250Z Selecting previously unselected package libzvbi-common. 2021-05-16T19:33:29.5818582Z Preparing to unpack .../23-libzvbi-common_0.2.35-17_all.deb ... 2021-05-16T19:33:29.5848728Z Unpacking libzvbi-common (0.2.35-17) ... 2021-05-16T19:33:29.6235497Z Selecting previously unselected package libzvbi0:amd64. 2021-05-16T19:33:29.6483794Z Preparing to unpack .../24-libzvbi0_0.2.35-17_amd64.deb ... 2021-05-16T19:33:29.6511147Z Unpacking libzvbi0:amd64 (0.2.35-17) ... 2021-05-16T19:33:29.7230641Z Selecting previously unselected package libavcodec58:amd64. 2021-05-16T19:33:29.7486285Z Preparing to unpack .../25-libavcodec58_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-16T19:33:29.7501186Z Unpacking libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:30.3755893Z Selecting previously unselected package libraw1394-11:amd64. 2021-05-16T19:33:30.4003572Z Preparing to unpack .../26-libraw1394-11_2.1.2-1_amd64.deb ... 2021-05-16T19:33:30.4015402Z Unpacking libraw1394-11:amd64 (2.1.2-1) ... 2021-05-16T19:33:30.4311998Z Selecting previously unselected package libavc1394-0:amd64. 2021-05-16T19:33:30.4643807Z Preparing to unpack .../27-libavc1394-0_0.5.4-5_amd64.deb ... 2021-05-16T19:33:30.4659533Z Unpacking libavc1394-0:amd64 (0.5.4-5) ... 2021-05-16T19:33:30.4979909Z Selecting previously unselected package libass9:amd64. 2021-05-16T19:33:30.5277034Z Preparing to unpack .../28-libass9_1%3a0.14.0-2_amd64.deb ... 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2021-05-16T19:33:36.9671971Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-16T19:33:36.9716884Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-16T19:33:36.9769029Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-16T19:33:36.9805965Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-16T19:33:36.9863372Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-16T19:33:36.9894921Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-16T19:33:37.0014889Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T19:33:37.0060534Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-16T19:33:37.0095767Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-16T19:33:37.0131529Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-16T19:33:37.0192958Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-16T19:33:37.0247690Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0281696Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-16T19:33:37.0317149Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0382791Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-16T19:33:37.0419038Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-16T19:33:37.0459486Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-16T19:33:37.0503290Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-16T19:33:37.0531703Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-16T19:33:37.0572083Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0626444Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-16T19:33:37.0659733Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-16T19:33:37.0716736Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-16T19:33:37.0841509Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0884528Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0925898Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.0955592Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-16T19:33:37.1008134Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-16T19:33:37.1054317Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.1098814Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.1139400Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.1226367Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-16T19:33:37.1366576Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:38.2777460Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:40.5163222Z Reading package lists... 2021-05-16T19:33:40.6907725Z Building dependency tree... 2021-05-16T19:33:40.6930057Z Reading state information... 2021-05-16T19:33:40.8634325Z The following additional packages will be installed: 2021-05-16T19:33:40.8637773Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-16T19:33:40.9189056Z The following NEW packages will be installed: 2021-05-16T19:33:40.9191248Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-16T19:33:40.9192775Z libmagick++-dev 2021-05-16T19:33:40.9470480Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:40.9472269Z Need to get 309 kB of archives. 2021-05-16T19:33:40.9473958Z After this operation, 2202 kB of additional disk space will be used. 2021-05-16T19:33:40.9476336Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-16T19:33:40.9499389Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-16T19:33:40.9535136Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-16T19:33:40.9554071Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-16T19:33:41.4055935Z Fetched 309 kB in 0s (9784 kB/s) 2021-05-16T19:33:41.4470162Z Selecting previously unselected package libmagick++-6-headers. 2021-05-16T19:33:41.4551317Z (Reading database ... 2021-05-16T19:33:41.4552278Z (Reading database ... 5% 2021-05-16T19:33:41.4553251Z (Reading database ... 10% 2021-05-16T19:33:41.4554030Z (Reading database ... 15% 2021-05-16T19:33:41.4554766Z (Reading database ... 20% 2021-05-16T19:33:41.4555555Z (Reading database ... 25% 2021-05-16T19:33:41.4556294Z (Reading database ... 30% 2021-05-16T19:33:41.4557020Z (Reading database ... 35% 2021-05-16T19:33:41.4557750Z (Reading database ... 40% 2021-05-16T19:33:41.4558485Z (Reading database ... 45% 2021-05-16T19:33:41.4559209Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-16T19:33:41.6803828Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.7261776Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-16T19:33:41.7563527Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-16T19:33:41.7576241Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.8314459Z Selecting previously unselected package libmagick++-dev. 2021-05-16T19:33:41.8564498Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-16T19:33:41.8648043Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.9297837Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.9505407Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.9547751Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.9585845Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T19:33:41.9708430Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:44.2455163Z Reading package lists... 2021-05-16T19:33:44.4047994Z Building dependency tree... 2021-05-16T19:33:44.4069339Z Reading state information... 2021-05-16T19:33:44.5660438Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-16T19:33:44.5662271Z The following additional packages will be installed: 2021-05-16T19:33:44.5665114Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-16T19:33:44.5666633Z libijs-0.35 libjbig2dec0 2021-05-16T19:33:44.5667523Z Suggested packages: 2021-05-16T19:33:44.5669011Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-16T19:33:44.5670322Z ghostscript-x 2021-05-16T19:33:44.6145918Z The following NEW packages will be installed: 2021-05-16T19:33:44.6151088Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-16T19:33:44.6158988Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-16T19:33:44.6368905Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:44.6369681Z Need to get 11.2 MB of archives. 2021-05-16T19:33:44.6370432Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-16T19:33:44.6372705Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-16T19:33:44.6577402Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-16T19:33:44.6590723Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-16T19:33:44.7339012Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-16T19:33:44.7436184Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-16T19:33:44.7444811Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-16T19:33:44.7453829Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-16T19:33:44.7697752Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-16T19:33:45.2137628Z Fetched 11.2 MB in 0s (74.7 MB/s) 2021-05-16T19:33:45.2505805Z Selecting previously unselected package fonts-droid-fallback. 2021-05-16T19:33:45.2581458Z (Reading database ... 2021-05-16T19:33:45.2586854Z (Reading database ... 5% 2021-05-16T19:33:45.2587667Z (Reading 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... 100% 2021-05-16T19:33:45.3783884Z (Reading database ... 267393 files and directories currently installed.) 2021-05-16T19:33:45.3896377Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-16T19:33:45.4177669Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-16T19:33:45.6515258Z Selecting previously unselected package fonts-noto-mono. 2021-05-16T19:33:45.6767177Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-16T19:33:45.6782788Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-16T19:33:45.7234251Z Selecting previously unselected package fonts-urw-base35. 2021-05-16T19:33:45.7486300Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-16T19:33:45.8183786Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-16T19:33:46.2515570Z Selecting previously unselected package libgs9-common. 2021-05-16T19:33:46.2815190Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-16T19:33:46.2827847Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:46.3995020Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-16T19:33:46.4244194Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-16T19:33:46.4274971Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-16T19:33:46.4594029Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-16T19:33:46.4840337Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-16T19:33:46.4854032Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-16T19:33:46.5273958Z Selecting previously unselected package libgs9:amd64. 2021-05-16T19:33:46.5508818Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-16T19:33:46.5521862Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:46.8707640Z Selecting previously unselected package ghostscript. 2021-05-16T19:33:46.8997853Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-16T19:33:46.9014716Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:46.9724485Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-16T19:33:46.9780920Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-16T19:33:46.9832066Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-16T19:33:47.0587419Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-16T19:33:47.0626729Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-16T19:33:47.0922422Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:47.1008965Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:47.1061237Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T19:33:47.1195407Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T19:33:47.2442578Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:47.2670928Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:33:50.4898103Z Reading package lists... 2021-05-16T19:33:50.6405163Z Building dependency tree... 2021-05-16T19:33:50.6426110Z Reading state information... 2021-05-16T19:33:50.7932452Z The following additional packages will be installed: 2021-05-16T19:33:50.7937222Z libudunits2-0 libudunits2-data 2021-05-16T19:33:50.8462506Z The following NEW packages will be installed: 2021-05-16T19:33:50.8465831Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-16T19:33:50.8659451Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:50.8660248Z Need to get 429 kB of archives. 2021-05-16T19:33:50.8661000Z After this operation, 1026 kB of additional disk space will be used. 2021-05-16T19:33:50.8663155Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-16T19:33:50.8675739Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-16T19:33:50.8691178Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-16T19:33:51.2976617Z Fetched 429 kB in 0s (16.7 MB/s) 2021-05-16T19:33:51.3354624Z Selecting previously unselected package libudunits2-data. 2021-05-16T19:33:51.3437779Z (Reading database ... 2021-05-16T19:33:51.3438374Z (Reading database ... 5% 2021-05-16T19:33:51.3438869Z (Reading database ... 10% 2021-05-16T19:33:51.3439381Z (Reading database ... 15% 2021-05-16T19:33:51.3439874Z (Reading database ... 20% 2021-05-16T19:33:51.3440384Z (Reading database ... 25% 2021-05-16T19:33:51.3440884Z (Reading database ... 30% 2021-05-16T19:33:51.3441370Z (Reading database ... 35% 2021-05-16T19:33:51.3441871Z (Reading database ... 40% 2021-05-16T19:33:51.3442546Z (Reading database ... 45% 2021-05-16T19:33:51.3443060Z (Reading database ... 50% 2021-05-16T19:33:51.3493039Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-16T19:33:51.5954741Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-16T19:33:51.6150804Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-16T19:33:51.6164439Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-16T19:33:51.7008150Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-16T19:33:51.7088008Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-16T19:33:51.7162692Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-16T19:33:51.7194987Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T19:33:51.8354399Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:33:53.9842999Z Reading package lists... 2021-05-16T19:33:54.1466791Z Building dependency tree... 2021-05-16T19:33:54.1486959Z Reading state information... 2021-05-16T19:33:54.3452507Z The following NEW packages will be installed: 2021-05-16T19:33:54.3455243Z libjq-dev 2021-05-16T19:33:54.3665806Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:54.3666555Z Need to get 11.2 kB of archives. 2021-05-16T19:33:54.3667530Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-16T19:33:54.3669628Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-16T19:33:54.8011809Z Fetched 11.2 kB in 0s (660 kB/s) 2021-05-16T19:33:54.8358457Z Selecting previously unselected package libjq-dev:amd64. 2021-05-16T19:33:54.8431006Z (Reading database ... 2021-05-16T19:33:54.8431836Z (Reading database ... 5% 2021-05-16T19:33:54.8433762Z (Reading database ... 10% 2021-05-16T19:33:54.8434316Z (Reading database ... 15% 2021-05-16T19:33:54.8434811Z (Reading database ... 20% 2021-05-16T19:33:54.8435314Z (Reading database ... 25% 2021-05-16T19:33:54.8435804Z (Reading database ... 30% 2021-05-16T19:33:54.8436307Z (Reading database ... 35% 2021-05-16T19:33:54.8436813Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-16T19:33:57.2143537Z Reading package lists... 2021-05-16T19:33:57.3578261Z Building dependency tree... 2021-05-16T19:33:57.3596118Z Reading state information... 2021-05-16T19:33:57.5495894Z The following NEW packages will be installed: 2021-05-16T19:33:57.5501426Z libmng2 2021-05-16T19:33:57.5743759Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:33:57.5744496Z Need to get 168 kB of archives. 2021-05-16T19:33:57.5745261Z After this operation, 571 kB of additional disk space will be used. 2021-05-16T19:33:57.5747089Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-16T19:33:57.9961387Z Fetched 168 kB in 0s (6161 kB/s) 2021-05-16T19:33:58.0314199Z Selecting previously unselected package libmng2:amd64. 2021-05-16T19:33:58.0387666Z (Reading database ... 2021-05-16T19:33:58.0388150Z (Reading database ... 5% 2021-05-16T19:33:58.0389002Z (Reading database ... 10% 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2021-05-16T19:33:58.1527538Z (Reading database ... 267992 files and directories currently installed.) 2021-05-16T19:33:58.1635423Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-16T19:33:58.1667615Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-16T19:33:58.2488633Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-16T19:33:58.2545160Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:34:00.3885968Z Reading package lists... 2021-05-16T19:34:00.5530045Z Building dependency tree... 2021-05-16T19:34:00.5551508Z Reading state information... 2021-05-16T19:34:00.6860859Z E: Unable to locate package libmng1 2021-05-16T19:34:00.7539474Z Reading package lists... 2021-05-16T19:34:00.9112272Z Building dependency tree... 2021-05-16T19:34:00.9134757Z Reading state information... 2021-05-16T19:34:01.0431418Z E: Unable to locate package libapparmor-devel 2021-05-16T19:34:01.1130913Z Reading package lists... 2021-05-16T19:34:01.2657596Z Building dependency tree... 2021-05-16T19:34:01.2678756Z Reading state information... 2021-05-16T19:34:01.4204685Z The following additional packages will be installed: 2021-05-16T19:34:01.4208213Z libij-java 2021-05-16T19:34:01.4673280Z The following NEW packages will be installed: 2021-05-16T19:34:01.4678111Z imagej libij-java 2021-05-16T19:34:01.4963280Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:01.4964345Z Need to get 2328 kB of archives. 2021-05-16T19:34:01.4965518Z After this operation, 2498 kB of additional disk space will be used. 2021-05-16T19:34:01.4967290Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-16T19:34:01.5348164Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-16T19:34:01.9781140Z Fetched 2328 kB in 0s (36.7 MB/s) 2021-05-16T19:34:02.0112222Z Selecting previously unselected package libij-java. 2021-05-16T19:34:02.0190715Z (Reading database ... 2021-05-16T19:34:02.0191455Z (Reading database ... 5% 2021-05-16T19:34:02.0192279Z (Reading database ... 10% 2021-05-16T19:34:02.0193143Z (Reading database ... 15% 2021-05-16T19:34:02.0193761Z (Reading database ... 20% 2021-05-16T19:34:02.0194378Z (Reading database ... 25% 2021-05-16T19:34:02.0194977Z (Reading database ... 30% 2021-05-16T19:34:02.0195594Z (Reading database ... 35% 2021-05-16T19:34:02.0196212Z (Reading database ... 40% 2021-05-16T19:34:02.0196824Z (Reading database ... 45% 2021-05-16T19:34:02.0197437Z (Reading database ... 50% 2021-05-16T19:34:02.0238890Z (Reading database ... 55% 2021-05-16T19:34:02.0290769Z (Reading database ... 60% 2021-05-16T19:34:02.0318444Z (Reading database ... 65% 2021-05-16T19:34:02.0443978Z (Reading database ... 70% 2021-05-16T19:34:02.0567944Z (Reading database ... 75% 2021-05-16T19:34:02.0593274Z (Reading database ... 80% 2021-05-16T19:34:02.1125362Z (Reading database ... 85% 2021-05-16T19:34:02.1288010Z (Reading database ... 90% 2021-05-16T19:34:02.1364235Z (Reading database ... 95% 2021-05-16T19:34:02.1365054Z (Reading database ... 100% 2021-05-16T19:34:02.1366217Z (Reading database ... 267998 files and directories currently installed.) 2021-05-16T19:34:02.1474067Z Preparing to unpack .../libij-java_1.52r-1_all.deb ... 2021-05-16T19:34:02.1497470Z Unpacking libij-java (1.52r-1) ... 2021-05-16T19:34:02.2474042Z Selecting previously unselected package imagej. 2021-05-16T19:34:02.2742761Z Preparing to unpack .../imagej_1.52r-1_all.deb ... 2021-05-16T19:34:02.2760478Z Unpacking imagej (1.52r-1) ... 2021-05-16T19:34:02.3692181Z Setting up libij-java (1.52r-1) ... 2021-05-16T19:34:02.3759535Z Setting up imagej (1.52r-1) ... 2021-05-16T19:34:02.3823504Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-16T19:34:03.2296118Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:34:03.9798131Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-16T19:34:06.2706184Z Reading package lists... 2021-05-16T19:34:06.4210101Z Building dependency tree... 2021-05-16T19:34:06.4231007Z Reading state information... 2021-05-16T19:34:06.5725076Z Suggested packages: 2021-05-16T19:34:06.5727701Z bowtie2-examples 2021-05-16T19:34:06.6188101Z The following NEW packages will be installed: 2021-05-16T19:34:06.6193005Z bowtie2 2021-05-16T19:34:06.6413946Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:06.6414800Z Need to get 1324 kB of archives. 2021-05-16T19:34:06.6416085Z After this operation, 5630 kB of additional disk space will be used. 2021-05-16T19:34:06.6418265Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-16T19:34:07.1026351Z Fetched 1324 kB in 0s (29.2 MB/s) 2021-05-16T19:34:07.1360506Z Selecting previously unselected package bowtie2. 2021-05-16T19:34:07.1438726Z (Reading database ... 2021-05-16T19:34:07.1439564Z (Reading database ... 5% 2021-05-16T19:34:07.1440349Z (Reading database ... 10% 2021-05-16T19:34:07.1440956Z (Reading database ... 15% 2021-05-16T19:34:07.1441542Z (Reading database ... 20% 2021-05-16T19:34:07.1442161Z (Reading database ... 25% 2021-05-16T19:34:07.1442923Z (Reading database ... 30% 2021-05-16T19:34:07.1443505Z (Reading database ... 35% 2021-05-16T19:34:07.1444295Z (Reading database ... 40% 2021-05-16T19:34:07.1444957Z (Reading database ... 45% 2021-05-16T19:34:07.1445631Z (Reading database ... 50% 2021-05-16T19:34:07.1483958Z (Reading database ... 55% 2021-05-16T19:34:07.1539012Z (Reading database ... 60% 2021-05-16T19:34:07.1581473Z (Reading database ... 65% 2021-05-16T19:34:07.1718973Z (Reading database ... 70% 2021-05-16T19:34:07.1849755Z (Reading database ... 75% 2021-05-16T19:34:07.1875821Z (Reading database ... 80% 2021-05-16T19:34:07.2434527Z (Reading database ... 85% 2021-05-16T19:34:07.2595340Z (Reading database ... 90% 2021-05-16T19:34:07.2672698Z (Reading database ... 95% 2021-05-16T19:34:07.2673309Z (Reading database ... 100% 2021-05-16T19:34:07.2674141Z (Reading database ... 268021 files and directories currently installed.) 2021-05-16T19:34:07.2780002Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-16T19:34:07.2816928Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-16T19:34:07.5019754Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-16T19:34:07.5099210Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:34:10.5830282Z Reading package lists... 2021-05-16T19:34:10.7643954Z Building dependency tree... 2021-05-16T19:34:10.7665785Z Reading state information... 2021-05-16T19:34:10.9001210Z E: Unable to locate package install 2021-05-16T19:34:10.9002189Z E: Unable to locate package gdal 2021-05-16T19:34:10.9706533Z Reading package lists... 2021-05-16T19:34:11.1276133Z Building dependency tree... 2021-05-16T19:34:11.1299989Z Reading state information... 2021-05-16T19:34:11.1548914Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-16T19:34:11.1549921Z This may mean that the package is missing, has been obsoleted, or 2021-05-16T19:34:11.1550556Z is only available from another source 2021-05-16T19:34:11.1550879Z 2021-05-16T19:34:11.2556998Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-16T19:34:11.3220096Z Reading package lists... 2021-05-16T19:34:11.4729214Z Building dependency tree... 2021-05-16T19:34:11.4751548Z Reading state information... 2021-05-16T19:34:11.4978378Z Package libav-tools is not available, but is referred to by another package. 2021-05-16T19:34:11.4979595Z This may mean that the package is missing, has been obsoleted, or 2021-05-16T19:34:11.4980483Z is only available from another source 2021-05-16T19:34:11.4981320Z However the following packages replace it: 2021-05-16T19:34:11.4981945Z ffmpeg 2021-05-16T19:34:11.4982255Z 2021-05-16T19:34:11.5990975Z E: Package 'libav-tools' has no installation candidate 2021-05-16T19:34:11.6652925Z Reading package lists... 2021-05-16T19:34:11.8137846Z Building dependency tree... 2021-05-16T19:34:11.8156316Z Reading state information... 2021-05-16T19:34:11.9698605Z The following additional packages will be installed: 2021-05-16T19:34:11.9700381Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-16T19:34:11.9701920Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-16T19:34:11.9704294Z libssh2-1-dev 2021-05-16T19:34:11.9704891Z Suggested packages: 2021-05-16T19:34:11.9705716Z libgcrypt20-doc libmbedtls-doc 2021-05-16T19:34:12.0216054Z The following NEW packages will be installed: 2021-05-16T19:34:12.0218533Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-16T19:34:12.0220547Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-16T19:34:12.0221849Z libssh2-1-dev 2021-05-16T19:34:12.0501923Z 0 upgraded, 11 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:12.0502764Z Need to get 2667 kB of archives. 2021-05-16T19:34:12.0503572Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-16T19:34:12.0505549Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-16T19:34:12.0539430Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-16T19:34:12.0591073Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-16T19:34:12.0608400Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-16T19:34:12.0617635Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-16T19:34:12.0624918Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-16T19:34:12.0635794Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-16T19:34:12.0676360Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-16T19:34:12.0801265Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-16T19:34:12.0828726Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-16T19:34:12.0834917Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-16T19:34:12.5664814Z Fetched 2667 kB in 0s (42.3 MB/s) 2021-05-16T19:34:12.6048503Z Selecting previously unselected package libgpg-error-dev. 2021-05-16T19:34:12.6125924Z (Reading database ... 2021-05-16T19:34:12.6127099Z (Reading database ... 5% 2021-05-16T19:34:12.6128091Z (Reading database 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2021-05-16T19:34:12.7247511Z (Reading database ... 268047 files and directories currently installed.) 2021-05-16T19:34:12.7350403Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-16T19:34:12.7365048Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-16T19:34:12.7914986Z Selecting previously unselected package libgcrypt20-dev. 2021-05-16T19:34:12.8095745Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-16T19:34:12.8115086Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-16T19:34:12.8938415Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-16T19:34:12.9219827Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-16T19:34:12.9277757Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-16T19:34:12.9624537Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-16T19:34:12.9896995Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T19:34:12.9915218Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.0485121Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-16T19:34:13.0765498Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T19:34:13.0792375Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.1233809Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-16T19:34:13.1442271Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T19:34:13.1479978Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.1914203Z Selecting previously unselected package libgit2-28:amd64. 2021-05-16T19:34:13.2120184Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-16T19:34:13.2133797Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T19:34:13.2827137Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-16T19:34:13.3112130Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T19:34:13.3123549Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.3915558Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-16T19:34:13.4173761Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-16T19:34:13.4201401Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-16T19:34:13.4851099Z Selecting previously unselected package libhttp-parser-dev. 2021-05-16T19:34:13.5143643Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-16T19:34:13.5158824Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-16T19:34:13.5460787Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-16T19:34:13.5764044Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-16T19:34:13.5777284Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T19:34:13.7127639Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-16T19:34:13.7190168Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.7270303Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-16T19:34:13.7334322Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-16T19:34:13.7407114Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.7457843Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.7517499Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T19:34:13.7584044Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-16T19:34:13.7669978Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-16T19:34:13.7738220Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T19:34:13.7789832Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T19:34:13.7885953Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:34:18.9989373Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T19:34:19.1304025Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:34:21.3415143Z Reading package lists... 2021-05-16T19:34:21.5253118Z Building dependency tree... 2021-05-16T19:34:21.5275196Z Reading state information... 2021-05-16T19:34:21.7838057Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-16T19:34:21.7839705Z libtiff-dev set to manually installed. 2021-05-16T19:34:21.7840765Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:21.8577038Z Reading package lists... 2021-05-16T19:34:22.0217503Z Building dependency tree... 2021-05-16T19:34:22.0239145Z Reading state information... 2021-05-16T19:34:22.2750302Z unixodbc-dev is already the newest version (2.3.7). 2021-05-16T19:34:22.2751710Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:22.3438556Z Reading package lists... 2021-05-16T19:34:22.5107664Z Building dependency tree... 2021-05-16T19:34:22.5130972Z Reading state information... 2021-05-16T19:34:22.7186764Z The following NEW packages will be installed: 2021-05-16T19:34:22.7192083Z libsodium-dev 2021-05-16T19:34:22.7392278Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:22.7394052Z Need to get 169 kB of archives. 2021-05-16T19:34:22.7394910Z After this operation, 826 kB of additional disk space will be used. 2021-05-16T19:34:22.7396813Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-16T19:34:23.1798026Z Fetched 169 kB in 0s (9625 kB/s) 2021-05-16T19:34:23.2161102Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-16T19:34:23.2237193Z (Reading database ... 2021-05-16T19:34:23.2237686Z (Reading database ... 5% 2021-05-16T19:34:23.2238136Z (Reading database ... 10% 2021-05-16T19:34:23.2238570Z (Reading database ... 15% 2021-05-16T19:34:23.2239468Z (Reading database ... 20% 2021-05-16T19:34:23.2239904Z (Reading database ... 25% 2021-05-16T19:34:23.2240369Z (Reading database ... 30% 2021-05-16T19:34:23.2240816Z (Reading database ... 35% 2021-05-16T19:34:23.2241242Z (Reading database ... 40% 2021-05-16T19:34:23.2241681Z (Reading database ... 45% 2021-05-16T19:34:23.2242105Z (Reading database ... 50% 2021-05-16T19:34:23.2271916Z (Reading database ... 55% 2021-05-16T19:34:23.2321421Z (Reading database ... 60% 2021-05-16T19:34:23.2347705Z (Reading database ... 65% 2021-05-16T19:34:23.2471655Z (Reading database ... 70% 2021-05-16T19:34:23.2594647Z (Reading database ... 75% 2021-05-16T19:34:23.2618940Z (Reading database ... 80% 2021-05-16T19:34:23.3135422Z (Reading database ... 85% 2021-05-16T19:34:23.3301119Z (Reading database ... 90% 2021-05-16T19:34:23.3380222Z (Reading database ... 95% 2021-05-16T19:34:23.3381344Z (Reading database ... 100% 2021-05-16T19:34:23.3382844Z (Reading database ... 268550 files and directories currently installed.) 2021-05-16T19:34:23.3500390Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-16T19:34:23.3519039Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-16T19:34:23.4483491Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-16T19:34:25.6067896Z Reading package lists... 2021-05-16T19:34:25.7802202Z Building dependency tree... 2021-05-16T19:34:25.7823307Z Reading state information... 2021-05-16T19:34:25.9388555Z The following additional packages will be installed: 2021-05-16T19:34:25.9392233Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-16T19:34:25.9882931Z The following NEW packages will be installed: 2021-05-16T19:34:25.9892563Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-16T19:34:25.9895611Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-16T19:34:26.0108985Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:26.0109736Z Need to get 10.4 MB of archives. 2021-05-16T19:34:26.0110499Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-16T19:34:26.0112772Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-16T19:34:26.0235398Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-16T19:34:26.0568304Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-16T19:34:26.0735638Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-16T19:34:26.0858827Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-16T19:34:26.0991239Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-16T19:34:26.1141083Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-16T19:34:26.1402798Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-16T19:34:26.6014667Z Fetched 10.4 MB in 0s (70.4 MB/s) 2021-05-16T19:34:26.6365819Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-16T19:34:26.6447543Z (Reading database ... 2021-05-16T19:34:26.6448137Z (Reading database ... 5% 2021-05-16T19:34:26.6448637Z (Reading database ... 10% 2021-05-16T19:34:26.6449147Z (Reading database ... 15% 2021-05-16T19:34:26.6449833Z (Reading database ... 20% 2021-05-16T19:34:26.6450405Z (Reading database ... 25% 2021-05-16T19:34:26.6451138Z (Reading database ... 30% 2021-05-16T19:34:26.6451681Z (Reading database ... 35% 2021-05-16T19:34:26.6452206Z (Reading database ... 40% 2021-05-16T19:34:26.6452751Z (Reading database ... 45% 2021-05-16T19:34:26.6453289Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-16T19:34:26.9117020Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-16T19:34:27.0474357Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-16T19:34:27.0712694Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-16T19:34:27.0732424Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-16T19:34:27.2474769Z Selecting previously unselected package libtesseract4:amd64. 2021-05-16T19:34:27.2692385Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-16T19:34:27.2717243Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-16T19:34:27.4235510Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-16T19:34:27.4457750Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-16T19:34:27.4478213Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-16T19:34:27.6285964Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-16T19:34:27.6572083Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-16T19:34:27.6588527Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-16T19:34:27.8485385Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-16T19:34:27.8780065Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-16T19:34:27.8814294Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-16T19:34:28.2705105Z Selecting previously unselected package tesseract-ocr. 2021-05-16T19:34:28.3023931Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-16T19:34:28.3042740Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-16T19:34:28.4038131Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-16T19:34:28.4094826Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-16T19:34:28.4151943Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-16T19:34:28.4198109Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-16T19:34:28.4240178Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-16T19:34:28.4294895Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-16T19:34:28.4352399Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-16T19:34:28.4387124Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-16T19:34:28.4428004Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:34:31.5844457Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:34:33.7428312Z Reading package lists... 2021-05-16T19:34:33.9147089Z Building dependency tree... 2021-05-16T19:34:33.9166473Z Reading state information... 2021-05-16T19:34:34.1543051Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-16T19:34:34.1544517Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:34.2204279Z Reading package lists... 2021-05-16T19:34:34.3686499Z Building dependency tree... 2021-05-16T19:34:34.3706012Z Reading state information... 2021-05-16T19:34:34.5287849Z The following additional packages will be installed: 2021-05-16T19:34:34.5291903Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-16T19:34:34.5293805Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-16T19:34:34.5296541Z Suggested packages: 2021-05-16T19:34:34.5297802Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-16T19:34:34.5806855Z The following NEW packages will be installed: 2021-05-16T19:34:34.5809432Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-16T19:34:34.5814713Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-16T19:34:34.6714289Z 0 upgraded, 10 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:34.6716118Z Need to get 1459 kB of archives. 2021-05-16T19:34:34.6717592Z After this operation, 7754 kB of additional disk space will be used. 2021-05-16T19:34:34.6721009Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-16T19:34:34.7761500Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-16T19:34:34.7824355Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-16T19:34:34.7901040Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-16T19:34:34.8007192Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-16T19:34:34.8086999Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-16T19:34:34.8233215Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-16T19:34:34.8523786Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-16T19:34:34.8651065Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-16T19:34:34.8904551Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-16T19:34:35.3482478Z Fetched 1459 kB in 0s (4523 kB/s) 2021-05-16T19:34:35.3833272Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-16T19:34:35.3914209Z (Reading database ... 2021-05-16T19:34:35.3915810Z (Reading database ... 5% 2021-05-16T19:34:35.3917155Z (Reading database ... 10% 2021-05-16T19:34:35.3918461Z (Reading database ... 15% 2021-05-16T19:34:35.3919739Z (Reading database ... 20% 2021-05-16T19:34:35.3921019Z (Reading database ... 25% 2021-05-16T19:34:35.3922312Z (Reading database ... 30% 2021-05-16T19:34:35.3923617Z (Reading database ... 35% 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2021-05-16T19:34:35.5634263Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-16T19:34:35.5849073Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T19:34:35.5878147Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:35.6314252Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-16T19:34:35.6522783Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T19:34:35.6550095Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:35.6955195Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-16T19:34:35.7212584Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T19:34:35.7233382Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:35.7634187Z Selecting previously unselected package comerr-dev:amd64. 2021-05-16T19:34:35.7870143Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-16T19:34:35.7926179Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-16T19:34:35.8303776Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-16T19:34:35.8587892Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T19:34:35.8614360Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:35.9134513Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-16T19:34:35.9434897Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-16T19:34:35.9454054Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-16T19:34:36.0315076Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-16T19:34:36.0579588Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T19:34:36.0591654Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-16T19:34:36.1155102Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-16T19:34:36.1429823Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T19:34:36.1450005Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.1818201Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-16T19:34:36.2079767Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-16T19:34:36.2098096Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-16T19:34:36.3753786Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-16T19:34:36.3825166Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.3877040Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-16T19:34:36.3939504Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-16T19:34:36.4005922Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.4034636Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.4084167Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.4141989Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.4191346Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T19:34:36.4238652Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-16T19:34:36.4282468Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:34:36.4539616Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:34:39.8637806Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T19:34:42.0884049Z Reading package lists... 2021-05-16T19:34:42.2507952Z Building dependency tree... 2021-05-16T19:34:42.2528909Z Reading state information... 2021-05-16T19:34:42.3828041Z E: Unable to locate package udunits 2021-05-16T19:34:42.4508971Z Reading package lists... 2021-05-16T19:34:42.6173752Z Building dependency tree... 2021-05-16T19:34:42.6193818Z Reading state information... 2021-05-16T19:34:42.7725429Z The following additional packages will be installed: 2021-05-16T19:34:42.7726731Z libwebpdemux2 2021-05-16T19:34:42.8167116Z The following NEW packages will be installed: 2021-05-16T19:34:42.8172215Z libwebp-dev libwebpdemux2 2021-05-16T19:34:42.8373009Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:42.8373927Z Need to get 277 kB of archives. 2021-05-16T19:34:42.8374743Z After this operation, 965 kB of additional disk space will be used. 2021-05-16T19:34:42.8377735Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-16T19:34:42.8390857Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-16T19:34:43.2707502Z Fetched 277 kB in 0s (12.3 MB/s) 2021-05-16T19:34:43.3054993Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-16T19:34:43.3138221Z (Reading database ... 2021-05-16T19:34:43.3139308Z (Reading database ... 5% 2021-05-16T19:34:43.3139906Z (Reading 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... 100% 2021-05-16T19:34:43.4407794Z (Reading database ... 269145 files and directories currently installed.) 2021-05-16T19:34:43.4527848Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-16T19:34:43.4557931Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-16T19:34:43.4850101Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-16T19:34:43.5144541Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-16T19:34:43.5158009Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-16T19:34:43.6162677Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-16T19:34:43.6227981Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-16T19:34:43.6281547Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:34:45.8144653Z Reading package lists... 2021-05-16T19:34:45.9672961Z Building dependency tree... 2021-05-16T19:34:45.9692902Z Reading state information... 2021-05-16T19:34:46.1241291Z The following additional packages will be installed: 2021-05-16T19:34:46.1243976Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-16T19:34:46.1257414Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-16T19:34:46.1259963Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-16T19:34:46.1261269Z Suggested packages: 2021-05-16T19:34:46.1262817Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-16T19:34:46.1264033Z Recommended packages: 2021-05-16T19:34:46.1264882Z cargo 2021-05-16T19:34:46.1789400Z The following NEW packages will be installed: 2021-05-16T19:34:46.1795579Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-16T19:34:46.1797528Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-16T19:34:46.1799135Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-16T19:34:46.2042012Z 0 upgraded, 13 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:34:46.2043194Z Need to get 108 MB of archives. 2021-05-16T19:34:46.2044498Z After this operation, 501 MB of additional disk space will be used. 2021-05-16T19:34:46.2046605Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-16T19:34:46.2095411Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-16T19:34:46.2104862Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-16T19:34:46.2113564Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-16T19:34:46.2202585Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-16T19:34:46.2229436Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-16T19:34:46.2234439Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-16T19:34:46.3594017Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-16T19:34:48.1929248Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-16T19:34:49.2541082Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-16T19:34:49.2957092Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-16T19:34:49.3791766Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-16T19:34:49.5622114Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-16T19:34:50.0406674Z Fetched 108 MB in 3s (31.9 MB/s) 2021-05-16T19:34:50.0758600Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-16T19:34:50.0838214Z (Reading database ... 2021-05-16T19:34:50.0839042Z (Reading database ... 5% 2021-05-16T19:34:50.0839815Z (Reading database ... 10% 2021-05-16T19:34:50.0840599Z (Reading database ... 15% 2021-05-16T19:34:50.0841357Z (Reading database ... 20% 2021-05-16T19:34:50.0842094Z (Reading database ... 25% 2021-05-16T19:34:50.0842827Z (Reading database ... 30% 2021-05-16T19:34:50.0843640Z (Reading database ... 35% 2021-05-16T19:34:50.0844318Z (Reading database ... 40% 2021-05-16T19:34:50.0844976Z (Reading database ... 45% 2021-05-16T19:34:50.0845651Z (Reading database ... 50% 2021-05-16T19:34:50.0883224Z (Reading database ... 55% 2021-05-16T19:34:50.0930539Z (Reading database ... 60% 2021-05-16T19:34:50.0962100Z (Reading database ... 65% 2021-05-16T19:34:50.1089420Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-16T19:34:50.3631398Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-16T19:34:50.4069031Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-16T19:34:50.4360526Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-16T19:34:50.4374928Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-16T19:34:50.5159878Z Selecting previously unselected package libsource-highlight4v5. 2021-05-16T19:34:50.5459065Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-16T19:34:50.5475838Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-16T19:34:50.6024867Z Selecting previously unselected package libxxhash0:amd64. 2021-05-16T19:34:50.6329828Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-16T19:34:50.6352243Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-16T19:34:50.6647448Z Selecting previously unselected package gdb. 2021-05-16T19:34:50.6953496Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-16T19:34:50.6964909Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-16T19:34:51.0435170Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-16T19:34:51.0715567Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T19:34:51.0728893Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:34:57.8542018Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-16T19:34:57.8836126Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T19:34:57.8849781Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:01.1658006Z Selecting previously unselected package rustc. 2021-05-16T19:35:01.1996975Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T19:35:01.2015885Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:01.4063696Z Selecting previously unselected package cargo. 2021-05-16T19:35:01.4359543Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T19:35:01.4383978Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-16T19:35:01.8110267Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-16T19:35:01.8408705Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-16T19:35:01.8420347Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-16T19:35:03.0922215Z Selecting previously unselected package rust-gdb. 2021-05-16T19:35:03.1225841Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-16T19:35:03.1252177Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.1980256Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.2041529Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-16T19:35:03.2086174Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-16T19:35:03.2131543Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.2185322Z Setting up libipt2 (2.0.1-1) ... 2021-05-16T19:35:03.2252583Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-16T19:35:03.2315483Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-16T19:35:03.2401765Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.2451988Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-16T19:35:03.2502797Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-16T19:35:03.2561346Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.2624655Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-16T19:35:03.2694771Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T19:35:03.2745711Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:35:03.2985903Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:35:06.8457916Z Reading package lists... 2021-05-16T19:35:07.0040047Z Building dependency tree... 2021-05-16T19:35:07.0060663Z Reading state information... 2021-05-16T19:35:07.1810608Z The following additional packages will be installed: 2021-05-16T19:35:07.1813471Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-16T19:35:07.1815264Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-16T19:35:07.1816867Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-16T19:35:07.1820402Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-16T19:35:07.1821995Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-16T19:35:07.1823392Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-16T19:35:07.1824688Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-16T19:35:07.1826157Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-16T19:35:07.1827666Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-16T19:35:07.1829285Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-16T19:35:07.1830777Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-16T19:35:07.1832295Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-16T19:35:07.1834026Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-16T19:35:07.1836011Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-16T19:35:07.1837685Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-16T19:35:07.1839247Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-16T19:35:07.1840765Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-16T19:35:07.1842171Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-16T19:35:07.1843894Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-16T19:35:07.1845176Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-16T19:35:07.1846439Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-16T19:35:07.1847770Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-16T19:35:07.1849013Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-16T19:35:07.1850207Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-16T19:35:07.1851402Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-16T19:35:07.1852885Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-16T19:35:07.1854333Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-16T19:35:07.1855836Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-16T19:35:07.1857352Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-16T19:35:07.1858746Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-16T19:35:07.1860090Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-16T19:35:07.1861387Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-16T19:35:07.1862798Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-16T19:35:07.1864246Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-16T19:35:07.1865816Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-16T19:35:07.1867392Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-16T19:35:07.1868851Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-16T19:35:07.1870281Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-16T19:35:07.1871644Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-16T19:35:07.1873229Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-16T19:35:07.1874766Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-16T19:35:07.1876282Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-16T19:35:07.1877687Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-16T19:35:07.1879313Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-16T19:35:07.1881030Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-16T19:35:07.1882491Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-16T19:35:07.1883941Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-16T19:35:07.1885523Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-16T19:35:07.1886840Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-16T19:35:07.1887655Z Suggested packages: 2021-05-16T19:35:07.1888745Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-16T19:35:07.1890098Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-16T19:35:07.1891630Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-16T19:35:07.1893173Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-16T19:35:07.1894485Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-16T19:35:07.1895876Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-16T19:35:07.1897372Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-16T19:35:07.1898886Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-16T19:35:07.1900510Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-16T19:35:07.1901833Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-16T19:35:07.1903511Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-16T19:35:07.1905018Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-16T19:35:07.1906385Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-16T19:35:07.1907666Z wpagui libengine-pkcs11-openssl 2021-05-16T19:35:07.2826519Z The following NEW packages will be installed: 2021-05-16T19:35:07.2830261Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-16T19:35:07.2833738Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-16T19:35:07.2836863Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-16T19:35:07.2839843Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-16T19:35:07.2842910Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-16T19:35:07.2845838Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-16T19:35:07.2848579Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-16T19:35:07.2856229Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-16T19:35:07.2858936Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-16T19:35:07.2861485Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-16T19:35:07.2864105Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-16T19:35:07.2866762Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-16T19:35:07.2869549Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-16T19:35:07.2872877Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-16T19:35:07.2875859Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-16T19:35:07.2878638Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-16T19:35:07.2881319Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-16T19:35:07.2886310Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-16T19:35:07.2889595Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-16T19:35:07.2891880Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-16T19:35:07.2894104Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-16T19:35:07.2896461Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-16T19:35:07.2898688Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-16T19:35:07.2900800Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-16T19:35:07.2902690Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-16T19:35:07.2904162Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-16T19:35:07.2905630Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-16T19:35:07.2907118Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-16T19:35:07.2908754Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-16T19:35:07.2910181Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-16T19:35:07.2911531Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-16T19:35:07.2913043Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-16T19:35:07.2914484Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-16T19:35:07.2915943Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-16T19:35:07.2917497Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-16T19:35:07.2919069Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-16T19:35:07.2920530Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-16T19:35:07.2921963Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-16T19:35:07.2923351Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-16T19:35:07.2924838Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-16T19:35:07.2926357Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-16T19:35:07.2927755Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-16T19:35:07.2929161Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-16T19:35:07.2930785Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-16T19:35:07.2932493Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-16T19:35:07.2933957Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-16T19:35:07.2935374Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-16T19:35:07.2936939Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-16T19:35:07.2938264Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-16T19:35:07.3159240Z 0 upgraded, 214 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:35:07.3160250Z Need to get 183 MB of archives. 2021-05-16T19:35:07.3161074Z After this operation, 776 MB of additional disk space will be used. 2021-05-16T19:35:07.3163170Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-16T19:35:07.3185543Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-16T19:35:07.3855976Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-16T19:35:07.3869142Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-16T19:35:07.3875247Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-16T19:35:07.3883201Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-16T19:35:07.3895241Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-16T19:35:07.3921726Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-16T19:35:07.3933507Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-16T19:35:07.3945220Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-16T19:35:07.3992162Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-16T19:35:07.4086314Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-16T19:35:07.4370893Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-16T19:35:07.4374341Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-16T19:35:07.4380047Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-16T19:35:07.4412800Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-16T19:35:07.4418580Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-16T19:35:07.4429585Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-16T19:35:07.4435524Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-16T19:35:07.4445284Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-16T19:35:07.4451311Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-16T19:35:07.4462571Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-16T19:35:07.4474713Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-16T19:35:07.5331766Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-16T19:35:07.5905255Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-16T19:35:07.5944742Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-16T19:35:07.5973306Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-16T19:35:07.6073224Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-16T19:35:07.6082230Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-16T19:35:07.6125275Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-16T19:35:07.6191097Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-16T19:35:07.6603916Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-16T19:35:07.6964297Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-16T19:35:07.6989946Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-16T19:35:07.7001944Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-16T19:35:07.7010235Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-16T19:35:08.0268547Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-16T19:35:08.0300310Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-16T19:35:08.0529661Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-16T19:35:08.0614537Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-16T19:35:08.0666096Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-16T19:35:08.0721164Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-16T19:35:08.0741080Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-16T19:35:08.0769121Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-16T19:35:08.0780741Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-16T19:35:08.0799277Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-16T19:35:08.0810559Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-16T19:35:08.0879442Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-16T19:35:08.0892923Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-16T19:35:08.0948645Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-16T19:35:08.0965335Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-16T19:35:08.0977171Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-16T19:35:08.0985756Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-16T19:35:08.1003942Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-16T19:35:08.1135648Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-16T19:35:08.1151343Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-16T19:35:08.2029277Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-16T19:35:08.2148340Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-16T19:35:08.2158321Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-16T19:35:08.2183222Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-16T19:35:08.2193413Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-16T19:35:08.2199345Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-16T19:35:08.2208780Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-16T19:35:08.2226140Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-16T19:35:08.2242567Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-16T19:35:08.2278143Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-16T19:35:08.2301707Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-16T19:35:08.2331325Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-16T19:35:08.2511331Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-16T19:35:08.2629319Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-16T19:35:08.3360217Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-16T19:35:08.3366645Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-16T19:35:08.3375032Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-16T19:35:08.3383878Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-16T19:35:08.3397215Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-16T19:35:08.3421861Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-16T19:35:08.3429943Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-16T19:35:08.4475593Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-16T19:35:08.4479097Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-16T19:35:08.4485101Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-16T19:35:08.4719682Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-16T19:35:08.4739764Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-16T19:35:08.4766945Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-16T19:35:08.4845011Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-16T19:35:08.5442421Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-16T19:35:08.5759433Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-16T19:35:08.5768393Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-16T19:35:08.5771133Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-16T19:35:08.5779627Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-16T19:35:08.5856776Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-16T19:35:08.5859128Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-16T19:35:08.5882223Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-16T19:35:08.5892627Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-16T19:35:08.5913968Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-16T19:35:08.5929020Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-16T19:35:08.5937810Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-16T19:35:08.6160224Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-16T19:35:08.6205396Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-16T19:35:08.6231393Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-16T19:35:08.6233874Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-16T19:35:08.6253022Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-16T19:35:08.6288550Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-16T19:35:08.6377507Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-16T19:35:08.6399018Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-16T19:35:08.6407204Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-16T19:35:08.6477858Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-16T19:35:08.6483995Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-16T19:35:09.4893310Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-16T19:35:09.4916557Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-16T19:35:09.4918909Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-16T19:35:09.5897816Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-16T19:35:09.6362497Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-16T19:35:09.6390621Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-16T19:35:09.6395865Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-16T19:35:09.6439347Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-16T19:35:09.6442054Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-16T19:35:09.6998801Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-16T19:35:09.7157741Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-16T19:35:09.7177050Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-16T19:35:09.7185574Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-16T19:35:09.7194006Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-16T19:35:09.7278578Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-16T19:35:09.7315675Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-16T19:35:09.7319041Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-16T19:35:09.7323565Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-16T19:35:09.7337690Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-16T19:35:09.7342295Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-16T19:35:09.7346790Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-16T19:35:09.7352286Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-16T19:35:09.7357620Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-16T19:35:09.7366581Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-16T19:35:09.7377937Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-16T19:35:09.7422330Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-16T19:35:09.7664401Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-16T19:35:09.7692896Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-16T19:35:09.7695478Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-16T19:35:09.7732599Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-16T19:35:09.7894065Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-16T19:35:09.7933006Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-16T19:35:09.7960279Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-16T19:35:09.7971654Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-16T19:35:09.8036934Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-16T19:35:09.8050517Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-16T19:35:09.8063548Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-16T19:35:09.8154445Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-16T19:35:09.8170640Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-16T19:35:09.8183358Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-16T19:35:09.8248763Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-16T19:35:09.8566008Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-16T19:35:09.9344622Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-16T19:35:09.9356332Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-16T19:35:09.9435636Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-16T19:35:09.9454952Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-16T19:35:09.9464757Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-16T19:35:09.9539440Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-16T19:35:09.9546235Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-16T19:35:10.0142623Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-16T19:35:10.0301643Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-16T19:35:10.0836812Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-16T19:35:10.1562369Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-16T19:35:10.1661574Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-16T19:35:10.1734772Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-16T19:35:10.1745265Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-16T19:35:10.1798004Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-16T19:35:10.1806644Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-16T19:35:10.1822547Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-16T19:35:10.1828702Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-16T19:35:10.1900485Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-16T19:35:10.1931121Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-16T19:35:10.2900813Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-16T19:35:10.2906624Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-16T19:35:10.2916049Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-16T19:35:10.2961619Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-16T19:35:10.2963974Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-16T19:35:10.2966208Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-16T19:35:10.2992934Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-16T19:35:10.2995533Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-16T19:35:10.2997941Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-16T19:35:10.3004782Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-16T19:35:10.3013413Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-16T19:35:10.3021832Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-16T19:35:10.3030162Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-16T19:35:10.3445497Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-16T19:35:10.3454255Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-16T19:35:10.4706692Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-16T19:35:10.4709361Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-16T19:35:10.4714893Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-16T19:35:10.4768724Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-16T19:35:10.4777277Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-16T19:35:10.4801392Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-16T19:35:10.4843519Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-16T19:35:10.4850150Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-16T19:35:10.5242632Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-16T19:35:10.5293154Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-16T19:35:10.5303837Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-16T19:35:10.6036507Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-16T19:35:10.6091392Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-16T19:35:10.6107808Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-16T19:35:10.6118293Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-16T19:35:10.6149075Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-16T19:35:10.6691555Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-16T19:35:10.8689670Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-16T19:35:10.8867892Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-16T19:35:10.9087860Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-16T19:35:11.4199011Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-16T19:35:11.5702800Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-16T19:35:11.5917123Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-16T19:35:11.6018468Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-16T19:35:11.6244546Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-16T19:35:11.6267487Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-16T19:35:11.6580146Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-16T19:35:11.7038640Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-16T19:35:11.7181993Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-16T19:35:11.7276547Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-16T19:35:12.9049711Z Fetched 183 MB in 4s (41.2 MB/s) 2021-05-16T19:35:12.9477741Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-16T19:35:12.9558185Z (Reading database ... 2021-05-16T19:35:12.9558816Z (Reading database ... 5% 2021-05-16T19:35:12.9559313Z (Reading database ... 10% 2021-05-16T19:35:12.9559820Z (Reading database ... 15% 2021-05-16T19:35:12.9560313Z (Reading database ... 20% 2021-05-16T19:35:12.9560814Z (Reading database ... 25% 2021-05-16T19:35:12.9561301Z (Reading database ... 30% 2021-05-16T19:35:12.9561800Z (Reading database ... 35% 2021-05-16T19:35:12.9562300Z (Reading database ... 40% 2021-05-16T19:35:12.9562784Z (Reading database ... 45% 2021-05-16T19:35:12.9563282Z (Reading database ... 50% 2021-05-16T19:35:12.9598246Z (Reading database ... 55% 2021-05-16T19:35:12.9646020Z (Reading database ... 60% 2021-05-16T19:35:12.9675114Z (Reading database ... 65% 2021-05-16T19:35:12.9800211Z (Reading database ... 70% 2021-05-16T19:35:12.9920792Z (Reading database ... 75% 2021-05-16T19:35:12.9945965Z (Reading database ... 80% 2021-05-16T19:35:13.0327282Z (Reading database ... 85% 2021-05-16T19:35:13.0627068Z (Reading database ... 90% 2021-05-16T19:35:13.0710404Z (Reading database ... 95% 2021-05-16T19:35:13.0712026Z (Reading database ... 100% 2021-05-16T19:35:13.0714320Z (Reading database ... 269928 files and directories currently installed.) 2021-05-16T19:35:13.0819148Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-16T19:35:13.0866808Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-16T19:35:13.1341957Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-16T19:35:13.1649743Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-16T19:35:13.1763354Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:13.3835097Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-16T19:35:13.4089131Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-16T19:35:13.4103303Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T19:35:13.4634476Z Selecting previously unselected package libegl1:amd64. 2021-05-16T19:35:13.4901102Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T19:35:13.4932796Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T19:35:13.5239910Z Selecting previously unselected package libevdev2:amd64. 2021-05-16T19:35:13.5533137Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-05-16T19:35:13.5544415Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-16T19:35:13.5924972Z Selecting previously unselected package libmtdev1:amd64. 2021-05-16T19:35:13.6218998Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-05-16T19:35:13.6239323Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-05-16T19:35:13.6568877Z Selecting previously unselected package libwacom-common. 2021-05-16T19:35:13.6894513Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-05-16T19:35:13.6905718Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-05-16T19:35:13.7742064Z Selecting previously unselected package libwacom2:amd64. 2021-05-16T19:35:13.8032163Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-05-16T19:35:13.8050245Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-16T19:35:13.8387039Z Selecting previously unselected package libinput-bin. 2021-05-16T19:35:13.8666642Z Preparing to unpack .../008-libinput-bin_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-16T19:35:13.8685491Z Unpacking libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-16T19:35:13.9107324Z Selecting previously unselected package libinput10:amd64. 2021-05-16T19:35:13.9339555Z Preparing to unpack .../009-libinput10_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-16T19:35:13.9359259Z Unpacking libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-16T19:35:13.9831641Z Selecting previously unselected package libqt5dbus5:amd64. 2021-05-16T19:35:14.0143216Z Preparing to unpack .../010-libqt5dbus5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-16T19:35:14.0156774Z Unpacking libqt5dbus5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:14.0797009Z Selecting previously unselected package libqt5network5:amd64. 2021-05-16T19:35:14.1050469Z Preparing to unpack .../011-libqt5network5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-16T19:35:14.1065328Z Unpacking libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:14.2115352Z Selecting previously unselected package libxcb-icccm4:amd64. 2021-05-16T19:35:14.2344636Z Preparing to unpack .../012-libxcb-icccm4_0.4.1-1.1_amd64.deb ... 2021-05-16T19:35:14.2366337Z Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... 2021-05-16T19:35:14.2722049Z Selecting previously unselected package libxcb-util1:amd64. 2021-05-16T19:35:14.3013672Z Preparing to unpack .../013-libxcb-util1_0.4.0-0ubuntu3_amd64.deb ... 2021-05-16T19:35:14.3031864Z Unpacking libxcb-util1:amd64 (0.4.0-0ubuntu3) ... 2021-05-16T19:35:14.3414303Z Selecting previously unselected package libxcb-image0:amd64. 2021-05-16T19:35:14.3685551Z Preparing to unpack .../014-libxcb-image0_0.4.0-1build1_amd64.deb ... 2021-05-16T19:35:14.3704219Z Unpacking libxcb-image0:amd64 (0.4.0-1build1) ... 2021-05-16T19:35:14.4035686Z Selecting previously unselected package libxcb-keysyms1:amd64. 2021-05-16T19:35:14.4332368Z Preparing to unpack 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2021-05-16T19:35:53.2334907Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-16T19:35:53.6433863Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-16T19:35:53.6467612Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:35:53.6556559Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-16T19:35:53.8260586Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-16T19:35:53.8355951Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-16T19:35:54.0111526Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:54.0163833Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-16T19:35:54.2251690Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-16T19:35:54.2349957Z Setting up gcr (3.36.0-2build1) ... 2021-05-16T19:35:54.2405937Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:54.2467084Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-16T19:35:54.4140758Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-16T19:35:54.4143616Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-16T19:35:54.9541031Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-16T19:35:55.2508181Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:55.2509461Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-16T19:35:55.2550487Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:35:55.2590171Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:35:55.2635455Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-16T19:35:55.2686795Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:35:55.2744866Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-16T19:35:55.4500051Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.4501698Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-16T19:35:55.4503187Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.4504539Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-16T19:35:55.4941526Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.4944312Z if direction is "increasing": 2021-05-16T19:35:55.4947925Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.4950463Z elif direction is "decreasing": 2021-05-16T19:35:55.5144337Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.5146815Z if direction is "increasing": 2021-05-16T19:35:55.5150043Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:55.5152382Z elif direction is "decreasing": 2021-05-16T19:35:56.5692187Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:35:56.5693883Z if props["offset_coordinates"] is "data": 2021-05-16T19:35:56.5695838Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-16T19:35:56.5697119Z if props["coordinates"] is not "data": 2021-05-16T19:35:57.4298633Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-16T19:35:58.0391149Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-16T19:35:58.0396456Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-16T19:35:58.0403101Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-16T19:35:59.2323240Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-16T19:35:59.2365611Z First installation detected... 2021-05-16T19:35:59.2366489Z Checking NSS setup... 2021-05-16T19:35:59.2410688Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-16T19:35:59.2448442Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:35:59.2504550Z Setting up python3-owslib (0.19.1-1) ... 2021-05-16T19:35:59.5751707Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-16T19:35:59.5816425Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-16T19:35:59.5871580Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-16T19:35:59.5912694Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-16T19:35:59.5951805Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-16T19:35:59.5985176Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-16T19:35:59.6026184Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-16T19:35:59.6077350Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-16T19:35:59.6113590Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-16T19:35:59.8286682Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-16T19:35:59.8325906Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-16T19:35:59.8365217Z Setting up grass-core (7.8.2-1build3) ... 2021-05-16T19:36:00.2231081Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:36:00.2232723Z if value is '': 2021-05-16T19:36:00.3368858Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:36:00.3370198Z if do_profiling is "True" or do_profiling is "1": 2021-05-16T19:36:00.3371321Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:36:00.3372524Z if do_profiling is "True" or do_profiling is "1": 2021-05-16T19:36:00.3373669Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-16T19:36:00.3374963Z if driver_string is not None and driver_string is not "": 2021-05-16T19:36:00.3881555Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:36:00.3883195Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-16T19:36:00.3884928Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T19:36:00.3886486Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-16T19:36:00.4584232Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-16T19:36:00.4626262Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.4753130Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-16T19:36:00.4792407Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.4823677Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.5035517Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:36:00.5066390Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.5095472Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.5140381Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:00.5178963Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.5218198Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-16T19:36:00.6190961Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:36:00.6221217Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.6255199Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:00.6289580Z Setting up modemmanager (1.12.8-1) ... 2021-05-16T19:36:00.7735535Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-16T19:36:00.7738534Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-16T19:36:01.3514121Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:36:01.3552182Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T19:36:01.3607985Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-16T19:36:01.3650417Z Setting up libqt5svg5:amd64 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2021-05-16T19:36:01.4125274Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-16T19:36:01.4167644Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-16T19:36:01.4208002Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:01.4258763Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:01.4305894Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-16T19:36:01.6158911Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-16T19:36:01.6194250Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:01.6231296Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:01.6278056Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.4790302Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:35.4842583Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-16T19:36:35.4901885Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.4968060Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:35.5053305Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.5093509Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.5136765Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T19:36:35.5178086Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.6801000Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.6844819Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-16T19:36:35.6923176Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.6981980Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-16T19:36:35.7021319Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.8773098Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.8833622Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.8901508Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T19:36:35.9074209Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-16T19:36:35.9263376Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-16T19:36:37.4134301Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T19:36:37.4334889Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-16T19:36:37.4633619Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-16T19:36:37.4826225Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-16T19:36:37.5446263Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T19:36:37.5772957Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-16T19:36:37.8317354Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:36:49.7150247Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-16T19:36:49.7447286Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-16T19:36:51.8329886Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-16T19:36:51.8330440Z with: 2021-05-16T19:36:51.8330945Z github_slug: neuroconductor/dcemriS4 2021-05-16T19:36:51.8331407Z env: 2021-05-16T19:36:51.8331862Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:36:51.8332333Z TIC_DEPLOY_KEY: 2021-05-16T19:36:51.8333269Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:36:51.8335024Z GITHUB_PAT: *** 2021-05-16T19:36:51.8335377Z COVERALLS_TOKEN: 2021-05-16T19:36:51.8335819Z continue-on-error: true 2021-05-16T19:36:51.8336231Z VDIFFR_RUN_TESTS: 2021-05-16T19:36:51.8336672Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:36:51.8337065Z TZ: UTC 2021-05-16T19:36:51.8337420Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:36:51.8337782Z NOT_CRAN: true 2021-05-16T19:36:51.8338127Z ##[endgroup] 2021-05-16T19:36:51.8670287Z repo slug is: neuroconductor/dcemriS4 2021-05-16T19:36:51.8815954Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-16T19:36:51.8816604Z env: 2021-05-16T19:36:51.8817120Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:36:51.8817702Z TIC_DEPLOY_KEY: 2021-05-16T19:36:51.8818653Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:36:51.8820184Z GITHUB_PAT: *** 2021-05-16T19:36:51.8820632Z COVERALLS_TOKEN: 2021-05-16T19:36:51.8821190Z continue-on-error: true 2021-05-16T19:36:51.8821733Z VDIFFR_RUN_TESTS: 2021-05-16T19:36:51.8822294Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:36:51.8822792Z TZ: UTC 2021-05-16T19:36:51.8823240Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:36:51.8823703Z NOT_CRAN: true 2021-05-16T19:36:51.8824132Z ##[endgroup] 2021-05-16T19:36:52.0939214Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-16T19:36:52.0939805Z with: 2021-05-16T19:36:52.0940199Z repo_name: dcemriS4 2021-05-16T19:36:52.0940612Z repo_version: 0.57.2 2021-05-16T19:36:52.0941021Z runner_os: Linux 2021-05-16T19:36:52.0941396Z R_version: 4.1 2021-05-16T19:36:52.0941758Z env: 2021-05-16T19:36:52.0942191Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:36:52.0942675Z TIC_DEPLOY_KEY: 2021-05-16T19:36:52.0943500Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:36:52.0944826Z GITHUB_PAT: *** 2021-05-16T19:36:52.0945188Z COVERALLS_TOKEN: 2021-05-16T19:36:52.0945608Z continue-on-error: true 2021-05-16T19:36:52.0946049Z VDIFFR_RUN_TESTS: 2021-05-16T19:36:52.0946472Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:36:52.0946977Z TZ: UTC 2021-05-16T19:36:52.0947272Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:36:52.0947599Z NOT_CRAN: true 2021-05-16T19:36:52.0947905Z ##[endgroup] 2021-05-16T19:36:52.1364137Z Package: dcemriS4 2021-05-16T19:36:52.1367590Z Version: 0.57.2 2021-05-16T19:36:52.1368212Z OS: Linux 2021-05-16T19:36:52.1421511Z ##[group]Run install.packages('remotes') 2021-05-16T19:36:52.1422318Z install.packages('remotes') 2021-05-16T19:36:52.1423222Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-16T19:36:52.1424324Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-16T19:36:52.1431395Z shell: /usr/local/bin/Rscript {0} 2021-05-16T19:36:52.1431779Z env: 2021-05-16T19:36:52.1432187Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:36:52.1432906Z TIC_DEPLOY_KEY: 2021-05-16T19:36:52.1433648Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:36:52.1435116Z GITHUB_PAT: *** 2021-05-16T19:36:52.1435531Z COVERALLS_TOKEN: 2021-05-16T19:36:52.1436017Z continue-on-error: true 2021-05-16T19:36:52.1436509Z VDIFFR_RUN_TESTS: 2021-05-16T19:36:52.1436993Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:36:52.1437483Z TZ: UTC 2021-05-16T19:36:52.1437872Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:36:52.1438294Z NOT_CRAN: true 2021-05-16T19:36:52.1438667Z ##[endgroup] 2021-05-16T19:36:52.3220846Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:36:52.3221688Z (as ‘lib’ is unspecified) 2021-05-16T19:37:07.9355144Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-16T19:37:08.3276085Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-16T19:37:08.3395336Z ================================================== 2021-05-16T19:37:08.3396714Z downloaded 145 KB 2021-05-16T19:37:08.3397432Z 2021-05-16T19:37:08.6379468Z * installing *source* package ‘remotes’ ... 2021-05-16T19:37:08.6421570Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-16T19:37:08.6423698Z ** using staged installation 2021-05-16T19:37:08.6594538Z ** R 2021-05-16T19:37:08.6794269Z ** inst 2021-05-16T19:37:08.6805363Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:37:10.6318547Z ** help 2021-05-16T19:37:10.7335885Z *** installing help indices 2021-05-16T19:37:10.7990616Z ** building package indices 2021-05-16T19:37:11.0547988Z ** installing vignettes 2021-05-16T19:37:11.0630922Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:37:11.2639469Z ** testing if installed package can be loaded from final location 2021-05-16T19:37:11.5281354Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:37:11.5305616Z * DONE (remotes) 2021-05-16T19:37:11.5433842Z 2021-05-16T19:37:11.5435113Z The downloaded source packages are in 2021-05-16T19:37:11.5436697Z ‘/tmp/RtmpS2u0a7/downloaded_packages’ 2021-05-16T19:37:30.2978380Z ##[group]Run actions/cache@v1 2021-05-16T19:37:30.2978819Z with: 2021-05-16T19:37:30.2979259Z path: /home/runner/work/_temp/Library 2021-05-16T19:37:30.2982466Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-4a76a1ddf567448e472f93c89c9c94bd8f33a2d29ea5c3eec4247148f0efae74 2021-05-16T19:37:30.2986578Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-16T19:37:30.2987915Z env: 2021-05-16T19:37:30.2988381Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:37:30.2988855Z TIC_DEPLOY_KEY: 2021-05-16T19:37:30.2989699Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:37:30.2991561Z GITHUB_PAT: *** 2021-05-16T19:37:30.2991983Z COVERALLS_TOKEN: 2021-05-16T19:37:30.2992723Z continue-on-error: true 2021-05-16T19:37:30.2993276Z VDIFFR_RUN_TESTS: 2021-05-16T19:37:30.2993763Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:37:30.2994286Z TZ: UTC 2021-05-16T19:37:30.2994682Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:37:30.2995116Z NOT_CRAN: true 2021-05-16T19:37:30.2995491Z ##[endgroup] 2021-05-16T19:37:30.3465657Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-16T19:37:30.3526206Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-16T19:37:30.3527105Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-16T19:37:30.3528489Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-16T19:37:30.3529132Z sudo -s eval "$sysreqs" 2021-05-16T19:37:30.3574219Z shell: /usr/bin/bash -e {0} 2021-05-16T19:37:30.3574752Z env: 2021-05-16T19:37:30.3575212Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:37:30.3575804Z TIC_DEPLOY_KEY: 2021-05-16T19:37:30.3576637Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:37:30.3578064Z GITHUB_PAT: *** 2021-05-16T19:37:30.3578474Z COVERALLS_TOKEN: 2021-05-16T19:37:30.3578963Z continue-on-error: true 2021-05-16T19:37:30.3579449Z VDIFFR_RUN_TESTS: 2021-05-16T19:37:30.3579933Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:37:30.3580389Z TZ: UTC 2021-05-16T19:37:30.3580801Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:37:30.3581224Z NOT_CRAN: true 2021-05-16T19:37:30.3581698Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-16T19:37:30.3582187Z ##[endgroup] 2021-05-16T19:37:30.5723642Z Using github PAT from envvar GITHUB_PAT 2021-05-16T19:37:31.1089693Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-16T19:37:47.2157876Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-16T19:37:47.2158859Z crayon (NA -> 1.4.1) [CRAN] 2021-05-16T19:37:47.2159707Z R6 (NA -> 2.5.0) [CRAN] 2021-05-16T19:37:47.2160521Z desc (NA -> 1.3.0) [CRAN] 2021-05-16T19:37:47.2161417Z debugme (NA -> 1.1.0) [CRAN] 2021-05-16T19:37:47.2184418Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-16T19:37:47.2197519Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:37:47.2198660Z (as ‘lib’ is unspecified) 2021-05-16T19:38:02.3694103Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-16T19:38:02.8749747Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-16T19:38:02.8751585Z ================================================== 2021-05-16T19:38:02.8753186Z downloaded 60 KB 2021-05-16T19:38:02.8753610Z 2021-05-16T19:38:02.8795491Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-16T19:38:03.2846140Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-16T19:38:03.2848396Z ================================================== 2021-05-16T19:38:03.2849692Z downloaded 34 KB 2021-05-16T19:38:03.2850607Z 2021-05-16T19:38:03.2890385Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-16T19:38:04.2426215Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-16T19:38:04.2427655Z ================================================== 2021-05-16T19:38:04.2428536Z downloaded 62 KB 2021-05-16T19:38:04.2429095Z 2021-05-16T19:38:04.2431678Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-16T19:38:04.5597967Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-16T19:38:04.5790049Z ================================================== 2021-05-16T19:38:04.5790985Z downloaded 285 KB 2021-05-16T19:38:04.5791576Z 2021-05-16T19:38:04.5835885Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-16T19:38:05.2391398Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-16T19:38:05.2690176Z ================================================== 2021-05-16T19:38:05.2691050Z downloaded 973 KB 2021-05-16T19:38:05.2691547Z 2021-05-16T19:38:05.5555336Z * installing *source* package ‘rprojroot’ ... 2021-05-16T19:38:05.5583245Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-16T19:38:05.5587222Z ** using staged installation 2021-05-16T19:38:05.5731294Z ** R 2021-05-16T19:38:05.5779923Z ** inst 2021-05-16T19:38:05.5792299Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:06.0733166Z ** help 2021-05-16T19:38:06.1021958Z *** installing help indices 2021-05-16T19:38:06.1300655Z *** copying figures 2021-05-16T19:38:06.1305050Z ** building package indices 2021-05-16T19:38:06.3391138Z ** installing vignettes 2021-05-16T19:38:06.3396477Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:06.5386916Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:06.7261237Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:06.7272105Z * DONE (rprojroot) 2021-05-16T19:38:06.9785859Z * installing *source* package ‘crayon’ ... 2021-05-16T19:38:06.9807257Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-16T19:38:06.9808526Z ** using staged installation 2021-05-16T19:38:06.9946353Z ** R 2021-05-16T19:38:07.0042368Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:07.9154362Z ** help 2021-05-16T19:38:07.9693503Z *** installing help indices 2021-05-16T19:38:08.0076177Z ** building package indices 2021-05-16T19:38:08.2493036Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:08.4458239Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:08.6520094Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:08.6530866Z * DONE (crayon) 2021-05-16T19:38:08.9063253Z * installing *source* package ‘R6’ ... 2021-05-16T19:38:08.9084336Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-16T19:38:08.9085696Z ** using staged installation 2021-05-16T19:38:08.9217105Z ** R 2021-05-16T19:38:08.9288152Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:09.4353443Z ** help 2021-05-16T19:38:09.4542459Z *** installing help indices 2021-05-16T19:38:09.4743830Z *** copying figures 2021-05-16T19:38:09.4746278Z ** building package indices 2021-05-16T19:38:09.6775598Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:09.8643440Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:10.0585042Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:10.0598657Z * DONE (R6) 2021-05-16T19:38:10.3793683Z * installing *source* package ‘desc’ ... 2021-05-16T19:38:10.3847015Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-16T19:38:10.3848520Z ** using staged installation 2021-05-16T19:38:10.4001115Z ** R 2021-05-16T19:38:10.4134206Z ** inst 2021-05-16T19:38:10.4147821Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:11.9875227Z ** help 2021-05-16T19:38:12.1402429Z *** installing help indices 2021-05-16T19:38:12.2309864Z ** building package indices 2021-05-16T19:38:12.5172780Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:12.7435903Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:12.9731467Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:12.9752851Z * DONE (desc) 2021-05-16T19:38:13.2416063Z * installing *source* package ‘debugme’ ... 2021-05-16T19:38:13.2449710Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-16T19:38:13.2451813Z ** using staged installation 2021-05-16T19:38:13.2559812Z ** R 2021-05-16T19:38:13.2594401Z ** inst 2021-05-16T19:38:13.2615062Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:13.6064541Z ** help 2021-05-16T19:38:13.6226471Z *** installing help indices 2021-05-16T19:38:13.6432985Z ** building package indices 2021-05-16T19:38:13.8446228Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:14.0347575Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:14.2242184Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:14.2249436Z * DONE (debugme) 2021-05-16T19:38:14.2330164Z 2021-05-16T19:38:14.2331122Z The downloaded source packages are in 2021-05-16T19:38:14.2332412Z ‘/tmp/RtmpmvM8Sc/downloaded_packages’ 2021-05-16T19:38:14.2333019Z Running `R CMD build`... 2021-05-16T19:38:14.4714502Z * checking for file ‘/tmp/RtmpmvM8Sc/remotes696335873512/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-16T19:38:14.4716083Z * preparing ‘sysreqs’: 2021-05-16T19:38:14.4717166Z * checking DESCRIPTION meta-information ... OK 2021-05-16T19:38:14.4718810Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:38:14.4719856Z * checking for empty or unneeded directories 2021-05-16T19:38:14.4720889Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T19:38:14.4721901Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-16T19:38:14.4723876Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:38:14.4724884Z (as ‘lib’ is unspecified) 2021-05-16T19:38:14.6833116Z * installing *source* package ‘sysreqs’ ... 2021-05-16T19:38:14.6834478Z ** using staged installation 2021-05-16T19:38:14.6968655Z ** R 2021-05-16T19:38:14.7002554Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:38:15.0713432Z ** help 2021-05-16T19:38:15.0914032Z *** installing help indices 2021-05-16T19:38:15.1089214Z ** building package indices 2021-05-16T19:38:15.3029941Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:38:15.5098682Z ** testing if installed package can be loaded from final location 2021-05-16T19:38:15.7121137Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:38:15.7126618Z * DONE (sysreqs) 2021-05-16T19:38:32.5421844Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-16T19:38:32.5424267Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-16T19:38:32.5426223Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-16T19:38:32.5689537Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-16T19:38:32.6201664Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-16T19:38:32.6621987Z Hit:6 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-16T19:38:32.7693522Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-16T19:38:32.9275230Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-16T19:38:33.0874750Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-16T19:38:35.2519754Z Reading package lists... 2021-05-16T19:38:35.2522123Z Reading package lists... 2021-05-16T19:38:35.2522950Z Building dependency tree... 2021-05-16T19:38:35.2523791Z Reading state information... 2021-05-16T19:38:35.2532064Z libxml2-dev is already the newest version (2.9.10+dfsg-5). 2021-05-16T19:38:35.2533454Z libxml2-dev set to manually installed. 2021-05-16T19:38:35.2534884Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-16T19:38:35.2535837Z Suggested packages: 2021-05-16T19:38:35.2537019Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-16T19:38:35.2538117Z The following NEW packages will be installed: 2021-05-16T19:38:35.2539455Z libcurl4-openssl-dev 2021-05-16T19:38:35.2540511Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T19:38:35.2541431Z Need to get 321 kB of archives. 2021-05-16T19:38:35.2542455Z After this operation, 1539 kB of additional disk space will be used. 2021-05-16T19:38:35.2544565Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-16T19:38:35.2853434Z Fetched 321 kB in 0s (12.9 MB/s) 2021-05-16T19:38:35.3239561Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-16T19:38:35.3334283Z (Reading database ... 2021-05-16T19:38:35.3335542Z (Reading database ... 5% 2021-05-16T19:38:35.3336331Z (Reading database ... 10% 2021-05-16T19:38:35.3337337Z (Reading database ... 15% 2021-05-16T19:38:35.3338045Z (Reading database ... 20% 2021-05-16T19:38:35.3338713Z (Reading database ... 25% 2021-05-16T19:38:35.3339396Z (Reading database ... 30% 2021-05-16T19:38:35.3340076Z (Reading database ... 35% 2021-05-16T19:38:35.3340926Z (Reading database ... 40% 2021-05-16T19:38:35.3341655Z (Reading database ... 45% 2021-05-16T19:38:35.3342391Z (Reading database ... 50% 2021-05-16T19:38:35.3387778Z (Reading database ... 55% 2021-05-16T19:38:35.3443094Z (Reading database ... 60% 2021-05-16T19:38:35.3493259Z (Reading database ... 65% 2021-05-16T19:38:35.3697867Z (Reading database ... 70% 2021-05-16T19:38:35.3734161Z (Reading database ... 75% 2021-05-16T19:38:35.4026845Z (Reading database ... 80% 2021-05-16T19:38:35.4136487Z (Reading database ... 85% 2021-05-16T19:38:35.4574226Z (Reading database ... 90% 2021-05-16T19:38:35.4657400Z (Reading database ... 95% 2021-05-16T19:38:35.4658821Z (Reading database ... 100% 2021-05-16T19:38:35.4660581Z (Reading database ... 285139 files and directories currently installed.) 2021-05-16T19:38:35.4778829Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-16T19:38:35.4799406Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-16T19:38:35.5871444Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-16T19:38:35.5925838Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T19:38:41.3370154Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-16T19:38:41.3370898Z remotes::install_github("ropensci/tic") 2021-05-16T19:38:41.3371578Z remotes::install_github("muschellij2/ghtravis") 2021-05-16T19:38:41.3372292Z remotes::install_github("muschellij2/aghast") 2021-05-16T19:38:41.3372888Z remotes::install_cran("covr") 2021-05-16T19:38:41.3380277Z shell: /usr/local/bin/Rscript {0} 2021-05-16T19:38:41.3380714Z env: 2021-05-16T19:38:41.3381194Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:38:41.3381686Z TIC_DEPLOY_KEY: 2021-05-16T19:38:41.3382536Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:38:41.3384223Z GITHUB_PAT: *** 2021-05-16T19:38:41.3384650Z COVERALLS_TOKEN: 2021-05-16T19:38:41.3385146Z continue-on-error: true 2021-05-16T19:38:41.3385660Z VDIFFR_RUN_TESTS: 2021-05-16T19:38:41.3386144Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:38:41.3386667Z TZ: UTC 2021-05-16T19:38:41.3387055Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:38:41.3387483Z NOT_CRAN: true 2021-05-16T19:38:41.3387909Z ##[endgroup] 2021-05-16T19:38:41.5537393Z Using github PAT from envvar GITHUB_PAT 2021-05-16T19:38:42.1162113Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-16T19:38:58.3899707Z rlang (NA -> 0.4.11) [CRAN] 2021-05-16T19:38:58.3901812Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-16T19:38:58.3903526Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-16T19:38:58.3905123Z sys (NA -> 3.4 ) [CRAN] 2021-05-16T19:38:58.3906722Z askpass (NA -> 1.1 ) [CRAN] 2021-05-16T19:38:58.3908364Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-16T19:38:58.3909955Z mime (NA -> 0.10 ) [CRAN] 2021-05-16T19:38:58.3911536Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-16T19:38:58.3913406Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-16T19:38:58.3916671Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-16T19:38:58.3919792Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-16T19:38:58.3921455Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-16T19:38:58.3922915Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-16T19:38:58.3924298Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-16T19:38:58.3925960Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-16T19:38:58.3927485Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-16T19:38:58.3928998Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-16T19:38:58.3932644Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-16T19:38:58.3935961Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-16T19:38:58.3937420Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-16T19:38:58.3938868Z whisker (NA -> 0.4 ) [CRAN] 2021-05-16T19:38:58.3940323Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-16T19:38:58.3941778Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-16T19:38:58.3945805Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:38:58.3946659Z (as ‘lib’ is unspecified) 2021-05-16T19:38:58.3947393Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-16T19:38:58.3948322Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-16T19:38:58.3949051Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-16T19:38:58.3949641Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-16T19:38:58.3950251Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-16T19:38:58.3950862Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-16T19:38:58.3951494Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-16T19:38:58.3952132Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-16T19:38:58.3953134Z git2r (NA -> 0.28.0) [CRAN] 2021-05-16T19:39:13.6905033Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-16T19:39:14.6306366Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-16T19:39:14.6588547Z ================================================== 2021-05-16T19:39:14.6589112Z downloaded 839 KB 2021-05-16T19:39:14.6589616Z 2021-05-16T19:39:14.6629828Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-16T19:39:15.1703332Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-16T19:39:15.1860948Z ================================================== 2021-05-16T19:39:15.1861954Z downloaded 258 KB 2021-05-16T19:39:15.1862568Z 2021-05-16T19:39:15.1898228Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-16T19:39:15.5765513Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-16T19:39:15.5820356Z ================================================== 2021-05-16T19:39:15.5821790Z downloaded 97 KB 2021-05-16T19:39:15.5822841Z 2021-05-16T19:39:15.5868385Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-16T19:39:16.0358240Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-16T19:39:16.0363461Z ================================================== 2021-05-16T19:39:16.0364366Z downloaded 19 KB 2021-05-16T19:39:16.0364922Z 2021-05-16T19:39:16.0425566Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-16T19:39:16.5493412Z Content type 'application/x-tar' length 5688 bytes 2021-05-16T19:39:16.5494683Z ================================================== 2021-05-16T19:39:16.5495543Z downloaded 5688 bytes 2021-05-16T19:39:16.5496119Z 2021-05-16T19:39:16.5527085Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-16T19:39:16.9652418Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-16T19:39:16.9999456Z ================================================== 2021-05-16T19:39:17.0000619Z downloaded 1.3 MB 2021-05-16T19:39:17.0001153Z 2021-05-16T19:39:17.0038263Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-16T19:39:17.6595547Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-16T19:39:17.6599768Z ================================================== 2021-05-16T19:39:17.6600715Z downloaded 12 KB 2021-05-16T19:39:17.6601270Z 2021-05-16T19:39:17.6654514Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-16T19:39:18.7265919Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-16T19:39:18.7592578Z ================================================== 2021-05-16T19:39:18.7593581Z downloaded 779 KB 2021-05-16T19:39:18.7594097Z 2021-05-16T19:39:18.7635212Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-16T19:39:19.3087061Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-16T19:39:19.3307717Z ================================================== 2021-05-16T19:39:19.3308347Z downloaded 412 KB 2021-05-16T19:39:19.3308697Z 2021-05-16T19:39:19.3349661Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-16T19:39:19.7255875Z Content type 'application/x-tar' length 3475 bytes 2021-05-16T19:39:19.7258003Z ================================================== 2021-05-16T19:39:19.7259284Z downloaded 3475 bytes 2021-05-16T19:39:19.7260210Z 2021-05-16T19:39:19.7308170Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-16T19:39:20.1253277Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-16T19:39:20.1365516Z ================================================== 2021-05-16T19:39:20.1366935Z downloaded 156 KB 2021-05-16T19:39:20.1367965Z 2021-05-16T19:39:20.1402175Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-16T19:39:22.1976023Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-16T19:39:22.1977712Z ================================================== 2021-05-16T19:39:22.1978563Z downloaded 60 KB 2021-05-16T19:39:22.1979120Z 2021-05-16T19:39:22.2009258Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-16T19:39:22.4775337Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-16T19:39:22.4895799Z ================================================== 2021-05-16T19:39:22.4896768Z downloaded 154 KB 2021-05-16T19:39:22.4897293Z 2021-05-16T19:39:22.4935003Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-16T19:39:23.0185792Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-16T19:39:23.0297668Z ================================================== 2021-05-16T19:39:23.0298247Z downloaded 110 KB 2021-05-16T19:39:23.0298578Z 2021-05-16T19:39:23.0341926Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-16T19:39:23.5401454Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-16T19:39:23.5463750Z ================================================== 2021-05-16T19:39:23.5464331Z downloaded 107 KB 2021-05-16T19:39:23.5464640Z 2021-05-16T19:39:23.5501858Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-16T19:39:23.9496964Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-16T19:39:23.9657471Z ================================================== 2021-05-16T19:39:23.9658327Z downloaded 225 KB 2021-05-16T19:39:23.9659018Z 2021-05-16T19:39:23.9693757Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-16T19:39:24.4752050Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-16T19:39:24.4757582Z ================================================== 2021-05-16T19:39:24.4758163Z downloaded 43 KB 2021-05-16T19:39:24.4758595Z 2021-05-16T19:39:24.4794054Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-16T19:39:24.9015267Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-16T19:39:24.9065888Z ================================================== 2021-05-16T19:39:24.9066437Z downloaded 90 KB 2021-05-16T19:39:24.9066734Z 2021-05-16T19:39:24.9106072Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-16T19:39:25.3041605Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-16T19:39:25.3166461Z ================================================== 2021-05-16T19:39:25.3167377Z downloaded 92 KB 2021-05-16T19:39:25.3167938Z 2021-05-16T19:39:25.3284889Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-16T19:39:25.6358086Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-16T19:39:25.6362611Z ================================================== 2021-05-16T19:39:25.6363457Z downloaded 28 KB 2021-05-16T19:39:25.6364007Z 2021-05-16T19:39:25.6427463Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-16T19:39:26.1497086Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-16T19:39:26.1498481Z ================================================== 2021-05-16T19:39:26.1499250Z downloaded 12 KB 2021-05-16T19:39:26.1499765Z 2021-05-16T19:39:26.1554012Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-16T19:39:26.4991631Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-16T19:39:26.5186705Z ================================================== 2021-05-16T19:39:26.5187642Z downloaded 364 KB 2021-05-16T19:39:26.5187982Z 2021-05-16T19:39:26.5244276Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-16T19:39:26.9204593Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-16T19:39:26.9257277Z ================================================== 2021-05-16T19:39:26.9258825Z downloaded 81 KB 2021-05-16T19:39:26.9259765Z 2021-05-16T19:39:26.9302094Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-16T19:39:27.3891312Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-16T19:39:27.3892664Z ================================================== 2021-05-16T19:39:27.3893504Z downloaded 44 KB 2021-05-16T19:39:27.3894056Z 2021-05-16T19:39:27.3949839Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-16T19:39:27.7889355Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-16T19:39:27.7951253Z ================================================== 2021-05-16T19:39:27.7952066Z downloaded 64 KB 2021-05-16T19:39:27.7952851Z 2021-05-16T19:39:27.7992010Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-16T19:39:28.4549960Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-16T19:39:28.4813501Z ================================================== 2021-05-16T19:39:28.4814050Z downloaded 781 KB 2021-05-16T19:39:28.4814351Z 2021-05-16T19:39:28.4854475Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-16T19:39:28.9524574Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-16T19:39:28.9525878Z ================================================== 2021-05-16T19:39:28.9526595Z downloaded 20 KB 2021-05-16T19:39:28.9526988Z 2021-05-16T19:39:28.9581942Z trying URL 'https://cloud.r-project.org/src/contrib/cachem_1.0.5.tar.gz' 2021-05-16T19:39:29.1016918Z Content type 'application/x-gzip' length 24974 bytes (24 KB) 2021-05-16T19:39:29.1018248Z ================================================== 2021-05-16T19:39:29.1019087Z downloaded 24 KB 2021-05-16T19:39:29.1019622Z 2021-05-16T19:39:29.1048593Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-16T19:39:29.4108825Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-16T19:39:29.4291878Z ================================================== 2021-05-16T19:39:29.4293745Z downloaded 297 KB 2021-05-16T19:39:29.4295390Z 2021-05-16T19:39:29.4330273Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-16T19:39:29.9390730Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-16T19:39:29.9392111Z ================================================== 2021-05-16T19:39:29.9393335Z downloaded 17 KB 2021-05-16T19:39:29.9393890Z 2021-05-16T19:39:29.9447756Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-16T19:39:30.5519872Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-16T19:39:30.5833886Z ================================================== 2021-05-16T19:39:30.5834614Z downloaded 1.2 MB 2021-05-16T19:39:30.5834911Z 2021-05-16T19:39:31.1266727Z * installing *source* package ‘rlang’ ... 2021-05-16T19:39:31.1403919Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:31.1405493Z ** using staged installation 2021-05-16T19:39:31.1600783Z ** libs 2021-05-16T19:39:31.1682496Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-16T19:39:31.2896687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-16T19:39:31.6285975Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-16T19:39:34.0315923Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-16T19:39:35.0629682Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T19:39:35.1059364Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:35.1636146Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-16T19:39:35.1639931Z ** R 2021-05-16T19:39:35.2106073Z ** inst 2021-05-16T19:39:35.2114929Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:38.6507083Z ** help 2021-05-16T19:39:39.3875724Z *** installing help indices 2021-05-16T19:39:39.7029195Z *** copying figures 2021-05-16T19:39:39.7036602Z ** building package indices 2021-05-16T19:39:40.2057311Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:40.4264421Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:40.5310672Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:40.8069636Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:40.8107104Z * DONE (rlang) 2021-05-16T19:39:41.0751166Z * installing *source* package ‘magrittr’ ... 2021-05-16T19:39:41.0779572Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:41.0780834Z ** using staged installation 2021-05-16T19:39:41.0916956Z ** libs 2021-05-16T19:39:41.0977065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-16T19:39:41.2463373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:39:41.3095010Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:41.3355312Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-16T19:39:41.3356619Z ** R 2021-05-16T19:39:41.3394299Z ** inst 2021-05-16T19:39:41.3409981Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:41.6317422Z ** help 2021-05-16T19:39:41.6737901Z *** installing help indices 2021-05-16T19:39:41.7039919Z *** copying figures 2021-05-16T19:39:41.7042665Z ** building package indices 2021-05-16T19:39:41.9158278Z ** installing vignettes 2021-05-16T19:39:41.9217778Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:42.1204685Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:42.1396959Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:42.3460816Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:42.3466902Z * DONE (magrittr) 2021-05-16T19:39:42.6114241Z * installing *source* package ‘glue’ ... 2021-05-16T19:39:42.6134742Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:42.6136790Z ** using staged installation 2021-05-16T19:39:42.6297341Z ** libs 2021-05-16T19:39:42.6344540Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-16T19:39:42.7588818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:39:42.8038260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-16T19:39:42.8910443Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:42.9155024Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-16T19:39:42.9156240Z ** R 2021-05-16T19:39:42.9201243Z ** inst 2021-05-16T19:39:42.9213027Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:43.3923375Z ** help 2021-05-16T19:39:43.4238058Z *** installing help indices 2021-05-16T19:39:43.4546146Z *** copying figures 2021-05-16T19:39:43.4548467Z ** building package indices 2021-05-16T19:39:43.6655144Z ** installing vignettes 2021-05-16T19:39:43.6715378Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:43.8978374Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:43.9169489Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:44.1495817Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:44.1509669Z * DONE (glue) 2021-05-16T19:39:44.3799123Z * installing *source* package ‘sys’ ... 2021-05-16T19:39:44.3813051Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:44.3814932Z ** using staged installation 2021-05-16T19:39:44.4019240Z ** libs 2021-05-16T19:39:44.4066975Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-16T19:39:44.6295899Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:39:44.6840412Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:44.7103297Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-16T19:39:44.7118094Z ** R 2021-05-16T19:39:44.7154321Z ** inst 2021-05-16T19:39:44.7162267Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:45.0021347Z ** help 2021-05-16T19:39:45.0239347Z *** installing help indices 2021-05-16T19:39:45.0439751Z ** building package indices 2021-05-16T19:39:45.2610097Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:45.4471980Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:45.4677163Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:45.6493025Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:45.6503115Z * DONE (sys) 2021-05-16T19:39:45.8599179Z * installing *source* package ‘mime’ ... 2021-05-16T19:39:45.8611096Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:45.8612706Z ** using staged installation 2021-05-16T19:39:45.8737197Z ** libs 2021-05-16T19:39:45.8810391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:39:45.9317203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-16T19:39:45.9909897Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:46.0090883Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-16T19:39:46.0105962Z ** R 2021-05-16T19:39:46.0167005Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:46.3673543Z ** help 2021-05-16T19:39:46.3859147Z *** installing help indices 2021-05-16T19:39:46.4030858Z ** building package indices 2021-05-16T19:39:46.6272353Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:46.8145586Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:46.8349449Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:47.0324721Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:47.0331420Z * DONE (mime) 2021-05-16T19:39:47.4010389Z * installing *source* package ‘curl’ ... 2021-05-16T19:39:47.4092358Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:47.4093193Z ** using staged installation 2021-05-16T19:39:47.4189450Z Found pkg-config cflags and libs! 2021-05-16T19:39:47.5154599Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-16T19:39:47.5155830Z Using PKG_LIBS=-lcurl 2021-05-16T19:39:47.5845091Z ** libs 2021-05-16T19:39:47.5920274Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-16T19:39:47.5951367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-16T19:39:47.6937004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-16T19:39:47.8752065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-16T19:39:47.9806898Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-16T19:39:48.0466017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-16T19:39:48.1648161Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-16T19:39:48.2451012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-16T19:39:48.3057187Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-16T19:39:48.6698733Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-16T19:39:48.7129974Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:39:48.7769286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-16T19:39:48.8480546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-16T19:39:49.0400310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-16T19:39:49.1019653Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-16T19:39:49.1669848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-16T19:39:49.2253640Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-16T19:39:49.2742427Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-16T19:39:49.3372508Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:39:49.4658395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T19:39:49.5408840Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-16T19:39:49.5620768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-16T19:39:49.6238716Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:49.6635343Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-16T19:39:49.6636878Z ** R 2021-05-16T19:39:49.6744889Z ** inst 2021-05-16T19:39:49.6781051Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:50.2386413Z ** help 2021-05-16T19:39:50.2887446Z *** installing help indices 2021-05-16T19:39:50.3251415Z ** building package indices 2021-05-16T19:39:50.5633816Z ** installing vignettes 2021-05-16T19:39:50.5695189Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:50.7743188Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:50.7950049Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:51.0017233Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:51.0027231Z * DONE (curl) 2021-05-16T19:39:51.3905267Z * installing *source* package ‘jsonlite’ ... 2021-05-16T19:39:51.3990937Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:51.3991731Z ** using staged installation 2021-05-16T19:39:51.4166869Z ** libs 2021-05-16T19:39:51.4236903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T19:39:51.5010694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-16T19:39:51.5687908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-16T19:39:51.6395738Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-16T19:39:51.7660871Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-16T19:39:51.8450078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-16T19:39:51.9011002Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-16T19:39:51.9537433Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-16T19:39:52.0155121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-16T19:39:52.0741708Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-16T19:39:52.2197751Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-16T19:39:52.3039160Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-16T19:39:52.3952133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-16T19:39:52.4774095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-16T19:39:52.5545800Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-16T19:39:52.6166525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-16T19:39:52.6767995Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-16T19:39:52.7247223Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-16T19:39:52.7989162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-16T19:39:52.8575909Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-16T19:39:52.9140144Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-16T19:39:52.9888552Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-16T19:39:53.0261332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-16T19:39:53.0835324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-16T19:39:53.1942403Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-16T19:39:53.4571148Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-16T19:39:53.7384517Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-16T19:39:53.9259544Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-16T19:39:54.0902444Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-16T19:39:54.0989378Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:39:54.1338742Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-16T19:39:54.1355854Z ** R 2021-05-16T19:39:54.1529500Z ** inst 2021-05-16T19:39:54.1546791Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:55.2712877Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-16T19:39:55.2713668Z ** help 2021-05-16T19:39:55.3043299Z *** installing help indices 2021-05-16T19:39:55.3313352Z ** building package indices 2021-05-16T19:39:55.5518866Z ** installing vignettes 2021-05-16T19:39:55.5602095Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:55.7642723Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:39:55.7886518Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:56.0082295Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:56.0097141Z * DONE (jsonlite) 2021-05-16T19:39:56.2399881Z * installing *source* package ‘ini’ ... 2021-05-16T19:39:56.2408810Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:56.2410662Z ** using staged installation 2021-05-16T19:39:56.2523848Z ** R 2021-05-16T19:39:56.2553802Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:56.5257277Z ** help 2021-05-16T19:39:56.5402633Z *** installing help indices 2021-05-16T19:39:56.5641903Z ** building package indices 2021-05-16T19:39:56.7732902Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:56.9794181Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:57.1744780Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:57.1749710Z * DONE (ini) 2021-05-16T19:39:57.4301295Z * installing *source* package ‘gitcreds’ ... 2021-05-16T19:39:57.4325004Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:57.4328904Z ** using staged installation 2021-05-16T19:39:57.4451557Z ** R 2021-05-16T19:39:57.4517820Z ** inst 2021-05-16T19:39:57.4531106Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:39:57.9675212Z ** help 2021-05-16T19:39:57.9955598Z *** installing help indices 2021-05-16T19:39:58.0203558Z ** building package indices 2021-05-16T19:39:58.2309751Z ** installing vignettes 2021-05-16T19:39:58.2369655Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:39:58.4470043Z ** testing if installed package can be loaded from final location 2021-05-16T19:39:58.6486738Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:39:58.6498882Z * DONE (gitcreds) 2021-05-16T19:39:58.9278188Z * installing *source* package ‘zip’ ... 2021-05-16T19:39:58.9306549Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-16T19:39:58.9308589Z ** using staged installation 2021-05-16T19:39:58.9415521Z ** libs 2021-05-16T19:39:58.9468839Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-16T19:40:02.0354426Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-16T19:40:05.0140037Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:40:05.0669477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-16T19:40:07.8475346Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-16T19:40:07.9525819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-16T19:40:08.0984984Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-16T19:40:08.1926725Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:40:08.2241013Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-16T19:40:08.2306846Z ** R 2021-05-16T19:40:08.2349697Z ** inst 2021-05-16T19:40:08.2360647Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:08.6143634Z ** help 2021-05-16T19:40:08.6369573Z *** installing help indices 2021-05-16T19:40:08.6619343Z ** building package indices 2021-05-16T19:40:08.8784997Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:09.0786028Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:40:09.1041952Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:09.3037925Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:09.3044914Z * DONE (zip) 2021-05-16T19:40:09.6331879Z * installing *source* package ‘rstudioapi’ ... 2021-05-16T19:40:09.6375931Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:09.6376954Z ** using staged installation 2021-05-16T19:40:09.6504352Z ** R 2021-05-16T19:40:09.6612180Z ** inst 2021-05-16T19:40:09.6631037Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:10.2353581Z ** help 2021-05-16T19:40:10.4089898Z *** installing help indices 2021-05-16T19:40:10.5298623Z *** copying figures 2021-05-16T19:40:10.5300912Z ** building package indices 2021-05-16T19:40:10.8367709Z ** installing vignettes 2021-05-16T19:40:10.8447809Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:11.0320220Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:11.2297610Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:11.2313842Z * DONE (rstudioapi) 2021-05-16T19:40:11.5073689Z * installing *source* package ‘fastmap’ ... 2021-05-16T19:40:11.5089392Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:11.5091409Z ** using staged installation 2021-05-16T19:40:11.5282166Z ** libs 2021-05-16T19:40:11.5347555Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-16T19:40:13.7636509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:40:13.8155572Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:40:13.8875624Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-16T19:40:13.8896830Z ** R 2021-05-16T19:40:13.8950295Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:14.3633713Z ** help 2021-05-16T19:40:14.3758091Z *** installing help indices 2021-05-16T19:40:14.3961017Z ** building package indices 2021-05-16T19:40:14.6439436Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:14.8332822Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:40:14.8524719Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:15.0394724Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:15.0407610Z * DONE (fastmap) 2021-05-16T19:40:15.3306403Z * installing *source* package ‘yaml’ ... 2021-05-16T19:40:15.3335388Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:15.3337451Z ** using staged installation 2021-05-16T19:40:15.3434288Z ** libs 2021-05-16T19:40:15.3497517Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-16T19:40:15.7124629Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-16T19:40:15.8682713Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-16T19:40:16.9035673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-16T19:40:17.0805677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-16T19:40:17.2187018Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-16T19:40:17.6049193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-16T19:40:17.9179218Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-16T19:40:18.0364513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-16T19:40:18.5118008Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-16T19:40:18.6319226Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-16T19:40:20.0553088Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-16T19:40:20.1270375Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:40:20.1614187Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-16T19:40:20.1626368Z ** R 2021-05-16T19:40:20.1657479Z ** inst 2021-05-16T19:40:20.1673206Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:20.4277650Z ** help 2021-05-16T19:40:20.4499207Z *** installing help indices 2021-05-16T19:40:20.4778322Z ** building package indices 2021-05-16T19:40:20.6871802Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:20.8736241Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:40:20.8938075Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:21.0757907Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:21.0764375Z * DONE (yaml) 2021-05-16T19:40:21.3788190Z * installing *source* package ‘withr’ ... 2021-05-16T19:40:21.3816723Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:21.3817776Z ** using staged installation 2021-05-16T19:40:21.3983069Z ** R 2021-05-16T19:40:21.4082219Z ** inst 2021-05-16T19:40:21.4086461Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:22.2034203Z ** help 2021-05-16T19:40:22.2869650Z *** installing help indices 2021-05-16T19:40:22.3464518Z *** copying figures 2021-05-16T19:40:22.3465589Z ** building package indices 2021-05-16T19:40:22.6168356Z ** installing vignettes 2021-05-16T19:40:22.6238584Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:22.8338897Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:23.0309010Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:23.0320142Z * DONE (withr) 2021-05-16T19:40:23.2843509Z * installing *source* package ‘whisker’ ... 2021-05-16T19:40:23.2862315Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:23.2863513Z ** using staged installation 2021-05-16T19:40:23.2959730Z ** R 2021-05-16T19:40:23.3003656Z ** inst 2021-05-16T19:40:23.3023974Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:23.7655077Z ** help 2021-05-16T19:40:23.7896586Z *** installing help indices 2021-05-16T19:40:23.8141192Z ** building package indices 2021-05-16T19:40:24.0376669Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:24.2244311Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:24.4083360Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:24.4091551Z * DONE (whisker) 2021-05-16T19:40:24.6714920Z * installing *source* package ‘rappdirs’ ... 2021-05-16T19:40:24.6727182Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:24.6728509Z ** using staged installation 2021-05-16T19:40:24.6997544Z ** libs 2021-05-16T19:40:24.7045671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:40:24.7580309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-16T19:40:24.8106986Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:40:24.8315150Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-16T19:40:24.8316508Z ** R 2021-05-16T19:40:24.8369984Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:40:25.1769127Z ** help 2021-05-16T19:40:25.2029963Z *** installing help indices 2021-05-16T19:40:25.2253319Z ** building package indices 2021-05-16T19:40:25.4521915Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:40:25.6468281Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:40:25.6666077Z ** testing if installed package can be loaded from final location 2021-05-16T19:40:25.8681001Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:40:25.8689469Z * DONE (rappdirs) 2021-05-16T19:40:26.3675787Z * installing *source* package ‘fs’ ... 2021-05-16T19:40:26.3816065Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-16T19:40:26.3820192Z ** using staged installation 2021-05-16T19:40:26.3985365Z ** libs 2021-05-16T19:40:26.4044245Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-16T19:40:27.0006711Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-16T19:40:27.4420692Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-16T19:40:27.8651454Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-16T19:40:27.9507119Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-16T19:40:28.2647727Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-16T19:40:28.5876360Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-16T19:40:28.6819651Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-16T19:40:29.1595169Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-16T19:40:29.4565422Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-16T19:40:29.5639941Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-16T19:40:29.8865588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-16T19:40:30.0200817Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-16T19:40:30.0676810Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-16T19:40:30.1009645Z (cd libuv-1.38.1 \ 2021-05-16T19:40:30.1012303Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-16T19:40:35.1773859Z make --directory=libuv-1.38.1 \ 2021-05-16T19:40:35.1774837Z HAVE_DTRACE=0 2021-05-16T19:40:35.1882127Z make[1]: Entering directory '/tmp/RtmpH8OmWo/R.INSTALL795ca6f1001/fs/src/libuv-1.38.1' 2021-05-16T19:40:35.1992694Z CC src/libuv_la-fs-poll.lo 2021-05-16T19:40:35.9451971Z CC src/libuv_la-idna.lo 2021-05-16T19:40:36.6627622Z CC src/libuv_la-inet.lo 2021-05-16T19:40:37.3878618Z CC src/libuv_la-random.lo 2021-05-16T19:40:37.9856868Z CC src/libuv_la-strscpy.lo 2021-05-16T19:40:38.5369301Z CC src/libuv_la-threadpool.lo 2021-05-16T19:40:39.2945638Z CC src/libuv_la-timer.lo 2021-05-16T19:40:40.0401125Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-16T19:40:40.6393058Z CC src/libuv_la-uv-common.lo 2021-05-16T19:40:41.8448123Z CC src/libuv_la-version.lo 2021-05-16T19:40:42.3827819Z CC src/unix/libuv_la-async.lo 2021-05-16T19:40:43.0519694Z CC src/unix/libuv_la-core.lo 2021-05-16T19:40:44.3347200Z CC src/unix/libuv_la-dl.lo 2021-05-16T19:40:44.9570234Z CC src/unix/libuv_la-fs.lo 2021-05-16T19:40:46.6754807Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-16T19:40:47.3866097Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-16T19:40:48.0159451Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-16T19:40:48.7145606Z CC src/unix/libuv_la-loop.lo 2021-05-16T19:40:49.3858486Z CC src/unix/libuv_la-pipe.lo 2021-05-16T19:40:50.1438397Z CC src/unix/libuv_la-poll.lo 2021-05-16T19:40:50.8103300Z CC src/unix/libuv_la-process.lo 2021-05-16T19:40:51.6511858Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-16T19:40:52.2503369Z CC src/unix/libuv_la-signal.lo 2021-05-16T19:40:53.2561163Z CC src/unix/libuv_la-stream.lo 2021-05-16T19:40:54.4329894Z CC src/unix/libuv_la-tcp.lo 2021-05-16T19:40:55.1915424Z CC src/unix/libuv_la-thread.lo 2021-05-16T19:40:56.0294464Z CC src/unix/libuv_la-tty.lo 2021-05-16T19:40:56.7519788Z CC src/unix/libuv_la-udp.lo 2021-05-16T19:40:57.9115732Z CC src/unix/libuv_la-linux-core.lo 2021-05-16T19:40:59.0159412Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-16T19:40:59.9694897Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-16T19:41:00.5401518Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-16T19:41:01.1286101Z CC src/unix/libuv_la-proctitle.lo 2021-05-16T19:41:01.7764058Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-16T19:41:02.3875024Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-16T19:41:03.0204803Z CCLD libuv.la 2021-05-16T19:41:03.2814277Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-16T19:41:03.3174210Z make[1]: Leaving directory '/tmp/RtmpH8OmWo/R.INSTALL795ca6f1001/fs/src/libuv-1.38.1' 2021-05-16T19:41:03.3196528Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:03.4252470Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-16T19:41:03.4284380Z ** R 2021-05-16T19:41:03.4412445Z ** inst 2021-05-16T19:41:03.4424182Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:04.6055836Z ** help 2021-05-16T19:41:04.6834195Z *** installing help indices 2021-05-16T19:41:04.7500992Z ** building package indices 2021-05-16T19:41:05.0134839Z ** installing vignettes 2021-05-16T19:41:05.0244947Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:05.2749902Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:05.2988827Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:05.5583094Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:05.5597375Z * DONE (fs) 2021-05-16T19:41:05.8020912Z * installing *source* package ‘clipr’ ... 2021-05-16T19:41:05.8034710Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:05.8036586Z ** using staged installation 2021-05-16T19:41:05.8239648Z ** R 2021-05-16T19:41:05.8279792Z ** inst 2021-05-16T19:41:05.8290695Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:06.1615113Z ** help 2021-05-16T19:41:06.1834371Z *** installing help indices 2021-05-16T19:41:06.2053795Z ** building package indices 2021-05-16T19:41:06.4154646Z ** installing vignettes 2021-05-16T19:41:06.4185937Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:06.6024830Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:06.8125706Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:07.7978245Z * DONE (clipr) 2021-05-16T19:41:07.7981973Z * installing *source* package ‘git2r’ ... 2021-05-16T19:41:07.7983150Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:07.7983973Z ** using staged installation 2021-05-16T19:41:07.8129554Z checking build system type... x86_64-unknown-linux-gnu 2021-05-16T19:41:07.8150536Z checking host system type... x86_64-unknown-linux-gnu 2021-05-16T19:41:07.8151581Z checking for gcc... gcc 2021-05-16T19:41:07.8746083Z checking whether the C compiler works... yes 2021-05-16T19:41:07.8747954Z checking for C compiler default output file name... a.out 2021-05-16T19:41:07.9131541Z checking for suffix of executables... 2021-05-16T19:41:07.9559460Z checking whether we are cross compiling... no 2021-05-16T19:41:07.9795656Z checking for suffix of object files... o 2021-05-16T19:41:08.0016295Z checking whether we are using the GNU C compiler... yes 2021-05-16T19:41:08.0236852Z checking whether gcc accepts -g... yes 2021-05-16T19:41:08.0609726Z checking for gcc option to accept ISO C89... none needed 2021-05-16T19:41:08.0621349Z checking for pkg-config... /usr/bin/pkg-config 2021-05-16T19:41:08.0635845Z checking pkg-config is at least version 0.9.0... yes 2021-05-16T19:41:08.0777679Z Found pkg-config cflags and libs! 2021-05-16T19:41:08.1734949Z checking whether the libgit2 version will work in git2r... yes 2021-05-16T19:41:08.3128087Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-16T19:41:08.4454680Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-16T19:41:08.5761218Z checking whether the libgit2 function git_error_last is available... yes 2021-05-16T19:41:08.6876259Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-16T19:41:08.6878704Z ----- Results of the git2r package configure ----- 2021-05-16T19:41:08.6879617Z 2021-05-16T19:41:08.6881187Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-16T19:41:08.6882563Z PKG_LIBS: -lgit2 2021-05-16T19:41:08.6883212Z 2021-05-16T19:41:08.6884375Z -------------------------------------------------- 2021-05-16T19:41:08.7099027Z configure: creating ./config.status 2021-05-16T19:41:08.7888349Z config.status: creating src/Makevars 2021-05-16T19:41:08.8470998Z ** libs 2021-05-16T19:41:08.8544432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-16T19:41:08.9282390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-16T19:41:08.9822290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-16T19:41:09.1536245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-16T19:41:09.2519250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-16T19:41:09.3865198Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-16T19:41:09.6250318Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-16T19:41:09.7193421Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-16T19:41:09.8101230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-16T19:41:09.9695149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-16T19:41:10.1504567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-16T19:41:10.2529278Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-16T19:41:10.5306562Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-16T19:41:10.6078940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-16T19:41:10.7056254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-16T19:41:10.8043517Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-16T19:41:10.8951143Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-16T19:41:11.0932716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-16T19:41:11.2347655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-16T19:41:11.3217639Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-16T19:41:11.4930530Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-16T19:41:11.5665529Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-16T19:41:11.6560443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-16T19:41:11.7610413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-16T19:41:11.8604075Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-16T19:41:12.0612203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-16T19:41:12.2381905Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-16T19:41:12.3266446Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-16T19:41:12.4191816Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-16T19:41:12.6137708Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-16T19:41:12.7025191Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-16T19:41:12.8439487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-16T19:41:13.0497812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-16T19:41:13.2003367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-16T19:41:13.2708438Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-16T19:41:13.3936876Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:13.4389975Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-16T19:41:13.4412669Z ** R 2021-05-16T19:41:13.4633481Z ** inst 2021-05-16T19:41:13.4643301Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:14.4995789Z ** help 2021-05-16T19:41:14.7542408Z *** installing help indices 2021-05-16T19:41:14.9484813Z ** building package indices 2021-05-16T19:41:15.3056940Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:15.5448776Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:15.5694197Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:15.7878100Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:15.7889684Z * DONE (git2r) 2021-05-16T19:41:16.0294662Z * installing *source* package ‘askpass’ ... 2021-05-16T19:41:16.0305727Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:16.0307567Z ** using staged installation 2021-05-16T19:41:16.0449008Z ** libs 2021-05-16T19:41:16.0500979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-16T19:41:16.1093042Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:16.1322053Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-16T19:41:16.1337323Z ** R 2021-05-16T19:41:16.1368797Z ** inst 2021-05-16T19:41:16.1377566Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:16.4104881Z ** help 2021-05-16T19:41:16.4289881Z *** installing help indices 2021-05-16T19:41:16.4444455Z ** building package indices 2021-05-16T19:41:16.6488974Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:16.8371066Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:16.8566069Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:17.0454723Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:17.0460443Z * DONE (askpass) 2021-05-16T19:41:17.4097874Z * installing *source* package ‘cli’ ... 2021-05-16T19:41:17.4160572Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:17.4162213Z ** using staged installation 2021-05-16T19:41:17.4363664Z ** R 2021-05-16T19:41:17.4660338Z ** inst 2021-05-16T19:41:17.4674258Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:20.2348083Z ** help 2021-05-16T19:41:20.4495834Z *** installing help indices 2021-05-16T19:41:20.5939843Z *** copying figures 2021-05-16T19:41:20.5943070Z ** building package indices 2021-05-16T19:41:20.9153711Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:21.1469029Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:21.4438190Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:21.4468657Z * DONE (cli) 2021-05-16T19:41:21.7860620Z * installing *source* package ‘purrr’ ... 2021-05-16T19:41:21.7915445Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:21.7916499Z ** using staged installation 2021-05-16T19:41:21.8081256Z ** libs 2021-05-16T19:41:21.8135031Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-16T19:41:21.8574450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-16T19:41:21.9541171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-16T19:41:22.0554022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-16T19:41:22.1886436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:41:22.2370316Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-16T19:41:22.3802998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-16T19:41:22.5245415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-16T19:41:22.6207829Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:41:22.6803278Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:22.7074448Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-16T19:41:22.7088606Z ** R 2021-05-16T19:41:22.7270742Z ** inst 2021-05-16T19:41:22.7282772Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:23.9823453Z ** help 2021-05-16T19:41:24.1644560Z *** installing help indices 2021-05-16T19:41:24.2643908Z *** copying figures 2021-05-16T19:41:24.2661618Z ** building package indices 2021-05-16T19:41:24.5713518Z ** installing vignettes 2021-05-16T19:41:24.5776584Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:24.7968804Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:24.8169432Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:25.0513187Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:25.0527953Z * DONE (purrr) 2021-05-16T19:41:25.3334351Z * installing *source* package ‘lifecycle’ ... 2021-05-16T19:41:25.3362949Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:25.3364690Z ** using staged installation 2021-05-16T19:41:25.3515751Z ** R 2021-05-16T19:41:25.3566332Z ** inst 2021-05-16T19:41:25.3578882Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:25.8016473Z ** help 2021-05-16T19:41:25.8371845Z *** installing help indices 2021-05-16T19:41:25.8693750Z *** copying figures 2021-05-16T19:41:25.8697984Z ** building package indices 2021-05-16T19:41:26.0853886Z ** installing vignettes 2021-05-16T19:41:26.0923524Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:26.2937110Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:26.4950864Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:26.4959864Z * DONE (lifecycle) 2021-05-16T19:41:26.7207429Z * installing *source* package ‘cachem’ ... 2021-05-16T19:41:26.7217492Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:26.7219226Z ** using staged installation 2021-05-16T19:41:26.7349491Z ** libs 2021-05-16T19:41:26.7404278Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-16T19:41:26.7994123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:41:26.8467669Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:26.8697553Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-16T19:41:26.8713025Z ** R 2021-05-16T19:41:26.8844780Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:27.4299414Z ** help 2021-05-16T19:41:27.4548070Z *** installing help indices 2021-05-16T19:41:27.4758682Z ** building package indices 2021-05-16T19:41:27.6965981Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:27.9093123Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:27.9296855Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:28.1509752Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:28.1517592Z * DONE (cachem) 2021-05-16T19:41:28.6164927Z * installing *source* package ‘openssl’ ... 2021-05-16T19:41:28.6289342Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:28.6291485Z ** using staged installation 2021-05-16T19:41:28.6506314Z Found pkg-config cflags and libs! 2021-05-16T19:41:28.7479785Z Using PKG_CFLAGS= 2021-05-16T19:41:29.1244487Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-16T19:41:29.1440112Z ** libs 2021-05-16T19:41:29.1515299Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-16T19:41:29.1559948Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-16T19:41:29.2571154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T19:41:29.3465886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-16T19:41:29.4576850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-16T19:41:29.6265979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-16T19:41:29.6981634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-16T19:41:29.8037147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-16T19:41:29.9276839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-16T19:41:29.9853009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-16T19:41:30.0854025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-16T19:41:30.1563936Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-16T19:41:30.2703182Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-16T19:41:30.4235357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-16T19:41:30.5166615Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-16T19:41:30.7218729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-16T19:41:30.7823758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-16T19:41:30.8303440Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-16T19:41:30.9715493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-16T19:41:31.1439592Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-16T19:41:31.2853413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-16T19:41:31.3363052Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-16T19:41:31.4454634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-16T19:41:31.5737565Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-16T19:41:31.7346281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-16T19:41:31.8739584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-16T19:41:32.0251694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-16T19:41:32.1618752Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-16T19:41:32.2449360Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-16T19:41:32.4436717Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-16T19:41:32.4496410Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:32.5076593Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-16T19:41:32.5092972Z ** R 2021-05-16T19:41:32.5208548Z ** inst 2021-05-16T19:41:32.5258583Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:33.4741271Z ** help 2021-05-16T19:41:33.5282884Z *** installing help indices 2021-05-16T19:41:33.5663839Z ** building package indices 2021-05-16T19:41:33.8008150Z ** installing vignettes 2021-05-16T19:41:33.8158605Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:34.0137903Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:34.0334452Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:34.2430604Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:34.2443737Z * DONE (openssl) 2021-05-16T19:41:34.4751588Z * installing *source* package ‘memoise’ ... 2021-05-16T19:41:34.4766375Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:34.4768578Z ** using staged installation 2021-05-16T19:41:34.4940182Z ** R 2021-05-16T19:41:34.5044343Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:34.9233561Z ** help 2021-05-16T19:41:34.9475821Z *** installing help indices 2021-05-16T19:41:34.9725027Z ** building package indices 2021-05-16T19:41:35.1946825Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:35.4087483Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:35.6303275Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:35.6309840Z * DONE (memoise) 2021-05-16T19:41:35.9590718Z * installing *source* package ‘httr’ ... 2021-05-16T19:41:35.9639174Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:35.9640013Z ** using staged installation 2021-05-16T19:41:35.9803777Z ** R 2021-05-16T19:41:35.9981189Z ** demo 2021-05-16T19:41:35.9993143Z ** inst 2021-05-16T19:41:36.0006932Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:38.7049584Z ** help 2021-05-16T19:41:38.8650269Z *** installing help indices 2021-05-16T19:41:38.9744777Z ** building package indices 2021-05-16T19:41:39.3013296Z ** installing vignettes 2021-05-16T19:41:39.3091540Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:39.4994810Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:39.7472417Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:39.7501668Z * DONE (httr) 2021-05-16T19:41:40.0017011Z * installing *source* package ‘credentials’ ... 2021-05-16T19:41:40.0035259Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:40.0037470Z ** using staged installation 2021-05-16T19:41:40.0176622Z ** R 2021-05-16T19:41:40.0223843Z ** inst 2021-05-16T19:41:40.0234939Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:40.4833504Z ** help 2021-05-16T19:41:40.5011121Z *** installing help indices 2021-05-16T19:41:40.5244083Z ** building package indices 2021-05-16T19:41:40.7325974Z ** installing vignettes 2021-05-16T19:41:40.7384460Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:41.3069402Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:41.3073976Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:41.3075318Z * DONE (credentials) 2021-05-16T19:41:41.5173226Z * installing *source* package ‘gh’ ... 2021-05-16T19:41:41.5192047Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:41.5194815Z ** using staged installation 2021-05-16T19:41:41.5357713Z ** R 2021-05-16T19:41:41.5443128Z ** inst 2021-05-16T19:41:41.5453149Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:42.5857981Z ** help 2021-05-16T19:41:42.6193573Z *** installing help indices 2021-05-16T19:41:42.6517586Z ** building package indices 2021-05-16T19:41:42.8673672Z ** installing vignettes 2021-05-16T19:41:42.8718108Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:43.1434448Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:43.4001678Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:43.4013164Z * DONE (gh) 2021-05-16T19:41:43.6777220Z * installing *source* package ‘gert’ ... 2021-05-16T19:41:43.6806191Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:43.6808244Z ** using staged installation 2021-05-16T19:41:43.6945779Z Found pkg-config cflags and libs! 2021-05-16T19:41:43.7865021Z Using PKG_CFLAGS= 2021-05-16T19:41:43.7866737Z Using PKG_LIBS=-lgit2 2021-05-16T19:41:43.8336779Z Configuration OK! 2021-05-16T19:41:43.8525848Z ** libs 2021-05-16T19:41:43.8580399Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-16T19:41:43.8609750Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-16T19:41:44.0889550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-16T19:41:44.3370720Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-16T19:41:44.5755436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-16T19:41:44.6689369Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-16T19:41:44.7453558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-16T19:41:44.8966230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:41:44.9614780Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-16T19:41:45.0655190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-16T19:41:45.1865625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-16T19:41:45.2778866Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-16T19:41:45.4095594Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-16T19:41:45.4984070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:41:45.6280014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T19:41:45.7103824Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:41:45.7514627Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-16T19:41:45.7515954Z ** R 2021-05-16T19:41:45.7581805Z ** inst 2021-05-16T19:41:45.7593941Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:46.5239745Z ** help 2021-05-16T19:41:46.5899125Z *** installing help indices 2021-05-16T19:41:46.6377135Z ** building package indices 2021-05-16T19:41:46.8793459Z ** installing vignettes 2021-05-16T19:41:46.8867237Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:47.1275290Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:41:47.1466699Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:47.3982711Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:47.4000055Z * DONE (gert) 2021-05-16T19:41:47.8099961Z * installing *source* package ‘usethis’ ... 2021-05-16T19:41:47.8184553Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-16T19:41:47.8185804Z ** using staged installation 2021-05-16T19:41:47.8437268Z ** R 2021-05-16T19:41:47.8802459Z ** inst 2021-05-16T19:41:47.8836618Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:41:50.5161703Z ** help 2021-05-16T19:41:50.7277966Z *** installing help indices 2021-05-16T19:41:50.8615737Z *** copying figures 2021-05-16T19:41:50.8620649Z ** building package indices 2021-05-16T19:41:51.1770775Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:51.4866325Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:51.8291159Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:51.8326045Z * DONE (usethis) 2021-05-16T19:41:51.8444309Z 2021-05-16T19:41:51.8445482Z The downloaded source packages are in 2021-05-16T19:41:51.8447207Z ‘/tmp/RtmpEn4Cob/downloaded_packages’ 2021-05-16T19:41:51.8447982Z Running `R CMD build`... 2021-05-16T19:41:54.1450435Z * checking for file ‘/tmp/RtmpEn4Cob/remotes72af5d39faca/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-16T19:41:54.1451872Z * preparing ‘tic’: 2021-05-16T19:41:54.1452857Z * checking DESCRIPTION meta-information ... OK 2021-05-16T19:41:54.1453827Z * installing the package to process help pages 2021-05-16T19:41:54.1455011Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:41:54.1455971Z * checking for empty or unneeded directories 2021-05-16T19:41:54.1456940Z Removed empty directory ‘tic/.circleci’ 2021-05-16T19:41:54.1457897Z Removed empty directory ‘tic/pkgdown’ 2021-05-16T19:41:54.1459683Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:41:54.1460678Z * building ‘tic_0.10.0.tar.gz’ 2021-05-16T19:41:54.1461594Z (as ‘lib’ is unspecified) 2021-05-16T19:41:54.5138311Z * installing *source* package ‘tic’ ... 2021-05-16T19:41:54.5165175Z ** using staged installation 2021-05-16T19:41:54.5430214Z ** R 2021-05-16T19:41:54.5641570Z ** inst 2021-05-16T19:41:54.5675823Z ** preparing package for lazy loading 2021-05-16T19:41:54.9345973Z ** help 2021-05-16T19:41:55.0970734Z *** installing help indices 2021-05-16T19:41:55.2034499Z *** copying figures 2021-05-16T19:41:55.2040232Z ** building package indices 2021-05-16T19:41:55.4876208Z ** installing vignettes 2021-05-16T19:41:55.4927306Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:41:55.7680168Z ** testing if installed package can be loaded from final location 2021-05-16T19:41:56.1056284Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:41:56.1088757Z * DONE (tic) 2021-05-16T19:41:56.1266817Z Using github PAT from envvar GITHUB_PAT 2021-05-16T19:41:56.3855940Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-16T19:41:57.4088190Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-16T19:41:57.4090021Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-16T19:41:57.4093065Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-16T19:41:57.4096034Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-16T19:41:57.4097285Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-16T19:41:57.4098703Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:41:57.4099781Z (as ‘lib’ is unspecified) 2021-05-16T19:41:57.4101009Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-16T19:41:57.4102090Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-16T19:41:57.4103204Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-16T19:41:57.4104271Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-16T19:41:57.4105360Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-16T19:41:57.4106418Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-16T19:41:57.4107442Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-16T19:41:57.4108601Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-16T19:41:57.4109673Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-16T19:41:57.4110752Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-16T19:41:57.4111860Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-16T19:41:57.4113483Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-16T19:41:57.4114613Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-16T19:41:57.4115664Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-16T19:41:57.4116712Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-16T19:41:57.4117747Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-16T19:41:57.4118798Z xfun (NA -> 0.23 ) [CRAN] 2021-05-16T19:41:57.4119869Z markdown (NA -> 1.1 ) [CRAN] 2021-05-16T19:41:57.4121289Z highr (NA -> 0.9 ) [CRAN] 2021-05-16T19:41:57.4122379Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-16T19:41:57.4123461Z stringi (NA -> 1.6.1 ) [CRAN] 2021-05-16T19:41:57.4124530Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-16T19:41:57.4125573Z knitr (NA -> 1.33 ) [CRAN] 2021-05-16T19:41:57.4126643Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-16T19:41:57.4127734Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-16T19:41:57.4130809Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-16T19:41:57.4131723Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-16T19:41:57.4132692Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-16T19:41:57.4133622Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-16T19:41:57.4134542Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-16T19:41:57.4135635Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-16T19:41:57.4136567Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-16T19:41:57.4137500Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-16T19:41:57.4138421Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-16T19:42:12.4298463Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-16T19:42:12.9365250Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-16T19:42:12.9550176Z ================================================== 2021-05-16T19:42:12.9551212Z downloaded 232 KB 2021-05-16T19:42:12.9551787Z 2021-05-16T19:42:12.9593392Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-16T19:42:13.4659428Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-16T19:42:13.5063026Z ================================================== 2021-05-16T19:42:13.5063810Z downloaded 766 KB 2021-05-16T19:42:13.5064393Z 2021-05-16T19:42:13.5102538Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-16T19:42:13.9147869Z Content type 'application/x-tar' length 6108 bytes 2021-05-16T19:42:13.9149924Z ================================================== 2021-05-16T19:42:13.9151117Z downloaded 6108 bytes 2021-05-16T19:42:13.9151940Z 2021-05-16T19:42:13.9202267Z trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.6.1.tar.gz' 2021-05-16T19:42:14.0500180Z Content type 'application/x-gzip' length 1111747 bytes (1.1 MB) 2021-05-16T19:42:14.0839639Z ================================================== 2021-05-16T19:42:14.0840334Z downloaded 1.1 MB 2021-05-16T19:42:14.0841622Z 2021-05-16T19:42:14.0874373Z trying URL 'https://cloud.r-project.org/src/contrib/tibble_3.1.2.tar.gz' 2021-05-16T19:42:14.1193210Z Content type 'application/x-gzip' length 686145 bytes (670 KB) 2021-05-16T19:42:14.1440010Z ================================================== 2021-05-16T19:42:14.1440875Z downloaded 670 KB 2021-05-16T19:42:14.1441377Z 2021-05-16T19:42:14.1461738Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-16T19:42:14.4154527Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-16T19:42:14.4156428Z ================================================== 2021-05-16T19:42:14.4157723Z downloaded 13 KB 2021-05-16T19:42:14.4158426Z 2021-05-16T19:42:14.4189904Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-16T19:42:15.0108251Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-16T19:42:15.0295565Z ================================================== 2021-05-16T19:42:15.0296107Z downloaded 264 KB 2021-05-16T19:42:15.0296388Z 2021-05-16T19:42:15.0341266Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-16T19:42:15.4256519Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-16T19:42:15.4482093Z ================================================== 2021-05-16T19:42:15.4482670Z downloaded 464 KB 2021-05-16T19:42:15.4483124Z 2021-05-16T19:42:15.4520242Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-16T19:42:15.7845637Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-16T19:42:15.7849827Z ================================================== 2021-05-16T19:42:15.7850731Z downloaded 25 KB 2021-05-16T19:42:15.7852614Z 2021-05-16T19:42:15.7905115Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-16T19:42:16.2957727Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-16T19:42:16.3023849Z ================================================== 2021-05-16T19:42:16.3024390Z downloaded 117 KB 2021-05-16T19:42:16.3024686Z 2021-05-16T19:42:16.3066601Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-16T19:42:16.6964749Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-16T19:42:16.7034299Z ================================================== 2021-05-16T19:42:16.7034811Z downloaded 138 KB 2021-05-16T19:42:16.7035104Z 2021-05-16T19:42:16.7073119Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-16T19:42:17.1003519Z Content type 'application/x-tar' length 6100 bytes 2021-05-16T19:42:17.1004173Z ================================================== 2021-05-16T19:42:17.1004627Z downloaded 6100 bytes 2021-05-16T19:42:17.1004936Z 2021-05-16T19:42:17.1050465Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-16T19:42:17.6326825Z Content type 'binary/octet-stream' length 60723 bytes (59 KB) 2021-05-16T19:42:17.6414901Z ================================================== 2021-05-16T19:42:17.6415891Z downloaded 59 KB 2021-05-16T19:42:17.6416450Z 2021-05-16T19:42:17.6456733Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-16T19:42:18.9025438Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-16T19:42:18.9027479Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-05-16T19:42:20.1149588Z Content type 'binary/octet-stream' length 74923 bytes (73 KB) 2021-05-16T19:42:20.1213260Z ================================================== 2021-05-16T19:42:20.1213994Z downloaded 73 KB 2021-05-16T19:42:20.1214479Z 2021-05-16T19:42:20.1249166Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-05-16T19:42:20.5157568Z Content type 'binary/octet-stream' length 12096 bytes (11 KB) 2021-05-16T19:42:20.5158673Z ================================================== 2021-05-16T19:42:20.5159175Z downloaded 11 KB 2021-05-16T19:42:20.5159495Z 2021-05-16T19:42:20.5215674Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-16T19:42:21.1764313Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-16T19:42:21.1932524Z 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2021-05-16T19:42:22.0765403Z Content type 'binary/octet-stream' length 15361 bytes (15 KB) 2021-05-16T19:42:22.0767783Z ================================================== 2021-05-16T19:42:22.0768284Z downloaded 15 KB 2021-05-16T19:42:22.0768598Z 2021-05-16T19:42:22.0806403Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-05-16T19:42:22.5868297Z Content type 'application/x-tar' length 135526 bytes (132 KB) 2021-05-16T19:42:22.5953048Z ================================================== 2021-05-16T19:42:22.5953617Z downloaded 132 KB 2021-05-16T19:42:22.5953938Z 2021-05-16T19:42:22.6009176Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.1.tar.gz' 2021-05-16T19:42:23.1141953Z Content type 'binary/octet-stream' length 7574951 bytes (7.2 MB) 2021-05-16T19:42:23.2257548Z ================================================== 2021-05-16T19:42:23.2259352Z downloaded 7.2 MB 2021-05-16T19:42:23.2260644Z 2021-05-16T19:42:23.2294684Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-16T19:42:23.8356181Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-16T19:42:23.8929120Z ================================================== 2021-05-16T19:42:23.8930159Z downloaded 2.8 MB 2021-05-16T19:42:23.8930704Z 2021-05-16T19:42:23.8964720Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-16T19:42:25.5537152Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-16T19:42:25.5844630Z ================================================== 2021-05-16T19:42:25.5847865Z downloaded 869 KB 2021-05-16T19:42:25.5848653Z 2021-05-16T19:42:25.5881380Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-16T19:42:26.0941569Z Content type 'application/x-tar' length 134376 bytes (131 KB) 2021-05-16T19:42:26.1052836Z ================================================== 2021-05-16T19:42:26.1053660Z downloaded 131 KB 2021-05-16T19:42:26.1054150Z 2021-05-16T19:42:26.1090098Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-16T19:42:26.4893827Z Content type 'application/x-tar' length 83765 bytes (81 KB) 2021-05-16T19:42:26.4961775Z ================================================== 2021-05-16T19:42:26.4963354Z downloaded 81 KB 2021-05-16T19:42:26.4964299Z 2021-05-16T19:42:26.5013889Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-16T19:42:26.7927725Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-16T19:42:26.7929918Z ================================================== 2021-05-16T19:42:26.7931107Z downloaded 11 KB 2021-05-16T19:42:26.7931907Z 2021-05-16T19:42:26.7961080Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-16T19:42:27.1947397Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-16T19:42:27.1949186Z ================================================== 2021-05-16T19:42:27.1950870Z downloaded 43 KB 2021-05-16T19:42:27.1951643Z 2021-05-16T19:42:27.1983263Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-16T19:42:27.7045095Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-16T19:42:27.7047310Z ================================================== 2021-05-16T19:42:27.7048568Z downloaded 10 KB 2021-05-16T19:42:27.7049581Z 2021-05-16T19:42:27.7080010Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-16T19:42:28.7995536Z Content type 'binary/octet-stream' length 30622 bytes (29 KB) 2021-05-16T19:42:28.7997826Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-16T19:42:30.1114826Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-16T19:42:30.1275846Z ================================================== 2021-05-16T19:42:30.1276430Z downloaded 249 KB 2021-05-16T19:42:30.1276725Z 2021-05-16T19:42:30.1315549Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-16T19:42:30.4020125Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-16T19:42:30.4088006Z ================================================== 2021-05-16T19:42:30.4088541Z downloaded 43 KB 2021-05-16T19:42:30.4088837Z 2021-05-16T19:42:30.4125734Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-16T19:42:30.9193635Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-16T19:42:30.9406154Z ================================================== 2021-05-16T19:42:30.9406761Z downloaded 361 KB 2021-05-16T19:42:30.9408452Z 2021-05-16T19:42:31.2843167Z * installing *source* package ‘utf8’ ... 2021-05-16T19:42:31.2916082Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:31.2916907Z ** using staged installation 2021-05-16T19:42:31.3070140Z ** libs 2021-05-16T19:42:31.3142093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-16T19:42:31.3911998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-16T19:42:31.5436797Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-16T19:42:31.6079994Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:42:31.6513468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-16T19:42:31.7260230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-16T19:42:31.9075310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-16T19:42:31.9807032Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-16T19:42:32.1346914Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-16T19:42:32.2330447Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-16T19:42:32.3372142Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-16T19:42:32.4153879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-16T19:42:32.4789290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-16T19:42:32.5460533Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-16T19:42:32.6106288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-16T19:42:32.6721080Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-16T19:42:32.7513102Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-16T19:42:32.8211235Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-16T19:42:32.8634664Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-16T19:42:32.9316677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-16T19:42:32.9910981Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-16T19:42:33.2244844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-16T19:42:33.5461714Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-16T19:42:33.7422250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-16T19:42:33.8205444Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-16T19:42:33.8917119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-16T19:42:33.9710159Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-16T19:42:34.0519759Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-16T19:42:34.0601650Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:42:34.0954719Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-16T19:42:34.0972967Z ** R 2021-05-16T19:42:34.1062850Z ** inst 2021-05-16T19:42:34.1071527Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:34.6292791Z ** help 2021-05-16T19:42:34.6603368Z *** installing help indices 2021-05-16T19:42:34.6866592Z ** building package indices 2021-05-16T19:42:34.9273638Z ** installing vignettes 2021-05-16T19:42:34.9277237Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:35.1197767Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:42:35.1386216Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:35.3388669Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:35.3396525Z * DONE (utf8) 2021-05-16T19:42:35.5762105Z * installing *source* package ‘pkgconfig’ ... 2021-05-16T19:42:35.5775651Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:35.5778563Z ** using staged installation 2021-05-16T19:42:35.5899893Z ** R 2021-05-16T19:42:35.5928627Z ** inst 2021-05-16T19:42:35.5936975Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:35.8367286Z ** help 2021-05-16T19:42:35.8714584Z *** installing help indices 2021-05-16T19:42:35.8901041Z ** building package indices 2021-05-16T19:42:36.0932551Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:36.2849396Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:36.4629854Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:36.4635529Z * DONE (pkgconfig) 2021-05-16T19:42:36.7546957Z * installing *source* package ‘fansi’ ... 2021-05-16T19:42:36.7583543Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:36.7585199Z ** using staged installation 2021-05-16T19:42:36.7719708Z ** libs 2021-05-16T19:42:36.7808702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-16T19:42:36.8252191Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-16T19:42:36.8918162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:42:36.9399834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-16T19:42:37.0155686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-16T19:42:37.5092595Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-16T19:42:37.5522032Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-16T19:42:37.9410417Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-16T19:42:38.0911345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-16T19:42:38.1535289Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-16T19:42:38.2847932Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-16T19:42:38.5498515Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-16T19:42:38.6585257Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-16T19:42:38.7227237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-16T19:42:38.7854146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:42:38.9624128Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-16T19:42:39.3041917Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:42:39.3395113Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-16T19:42:39.3396951Z ** R 2021-05-16T19:42:39.3510653Z ** inst 2021-05-16T19:42:39.3521592Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:40.0347577Z ** help 2021-05-16T19:42:40.1025399Z *** installing help indices 2021-05-16T19:42:40.1434478Z ** building package indices 2021-05-16T19:42:40.3913621Z ** installing vignettes 2021-05-16T19:42:40.3951435Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:40.5907000Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:42:40.6114207Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:40.8143291Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:40.8158621Z * DONE (fansi) 2021-05-16T19:42:41.2954180Z * installing *source* package ‘diffobj’ ... 2021-05-16T19:42:41.3062266Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:41.3063738Z ** using staged installation 2021-05-16T19:42:41.3219220Z ** libs 2021-05-16T19:42:41.3267878Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-16T19:42:41.5614500Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-16T19:42:41.6295910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:42:41.6818795Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:42:41.7114512Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-16T19:42:41.7115834Z ** R 2021-05-16T19:42:41.7561922Z ** inst 2021-05-16T19:42:41.7579340Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:48.1492485Z ** help 2021-05-16T19:42:48.3687010Z *** installing help indices 2021-05-16T19:42:48.5157830Z ** building package indices 2021-05-16T19:42:48.8113419Z ** installing vignettes 2021-05-16T19:42:48.8177179Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:49.1269258Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:42:49.1457560Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:49.6300858Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:49.6375967Z * DONE (diffobj) 2021-05-16T19:42:49.9416172Z * installing *source* package ‘ps’ ... 2021-05-16T19:42:49.9456342Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:49.9457668Z ** using staged installation 2021-05-16T19:42:50.1675684Z ** libs 2021-05-16T19:42:50.1732826Z gcc -g -O2 -Wall px.c -o px 2021-05-16T19:42:50.3128115Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:42:50.3813840Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-16T19:42:50.4542172Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-16T19:42:50.5236334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-16T19:42:50.6893292Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-16T19:42:50.7428644Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-16T19:42:51.0301334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-16T19:42:51.2087178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-16T19:42:51.3162549Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-16T19:42:51.4279729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-16T19:42:51.8951950Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:42:51.9275533Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-16T19:42:51.9288195Z ** R 2021-05-16T19:42:51.9399440Z ** inst 2021-05-16T19:42:51.9409712Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:52.9273539Z ** help 2021-05-16T19:42:53.0664596Z *** installing help indices 2021-05-16T19:42:53.1599415Z ** building package indices 2021-05-16T19:42:53.4356409Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:53.6285940Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:42:53.6479239Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:53.8463197Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:53.8478146Z * DONE (ps) 2021-05-16T19:42:54.0598793Z * installing *source* package ‘praise’ ... 2021-05-16T19:42:54.0606808Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:54.0608695Z ** using staged installation 2021-05-16T19:42:54.0719464Z ** R 2021-05-16T19:42:54.0762098Z ** inst 2021-05-16T19:42:54.0771928Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:54.3114518Z ** help 2021-05-16T19:42:54.3231151Z *** installing help indices 2021-05-16T19:42:54.3454253Z ** building package indices 2021-05-16T19:42:54.5459317Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:54.7284926Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:54.9071392Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:54.9081470Z * DONE (praise) 2021-05-16T19:42:55.2521322Z * installing *source* package ‘pkgload’ ... 2021-05-16T19:42:55.2572894Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:55.2573738Z ** using staged installation 2021-05-16T19:42:55.2719442Z ** R 2021-05-16T19:42:55.2824816Z ** inst 2021-05-16T19:42:55.2831753Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:56.1873440Z ** help 2021-05-16T19:42:56.2436360Z *** installing help indices 2021-05-16T19:42:56.2919562Z ** building package indices 2021-05-16T19:42:56.5473895Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:57.0295527Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:57.5286720Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:57.5300088Z * DONE (pkgload) 2021-05-16T19:42:57.7867730Z * installing *source* package ‘evaluate’ ... 2021-05-16T19:42:57.7886319Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:57.7888422Z ** using staged installation 2021-05-16T19:42:57.8037218Z ** R 2021-05-16T19:42:57.8091832Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:58.3117831Z ** help 2021-05-16T19:42:58.3410304Z *** installing help indices 2021-05-16T19:42:58.3718720Z ** building package indices 2021-05-16T19:42:58.5879101Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:42:58.7720217Z ** testing if installed package can be loaded from final location 2021-05-16T19:42:58.9621014Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:42:58.9628395Z * DONE (evaluate) 2021-05-16T19:42:59.1878644Z * installing *source* package ‘ellipsis’ ... 2021-05-16T19:42:59.1892239Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-16T19:42:59.1893337Z ** using staged installation 2021-05-16T19:42:59.2041807Z ** libs 2021-05-16T19:42:59.2099079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-16T19:42:59.2905096Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:42:59.3379770Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:42:59.3642122Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-16T19:42:59.3656508Z ** R 2021-05-16T19:42:59.3693052Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:42:59.6487915Z ** help 2021-05-16T19:42:59.6753398Z *** installing help indices 2021-05-16T19:42:59.6962790Z ** building package indices 2021-05-16T19:42:59.9073044Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:43:00.1136990Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:43:00.1349044Z ** testing if installed package can be loaded from final location 2021-05-16T19:43:00.3440595Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:43:00.3442061Z * DONE (ellipsis) 2021-05-16T19:43:00.6273150Z * installing *source* package ‘digest’ ... 2021-05-16T19:43:00.6307070Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-16T19:43:00.6308940Z ** using staged installation 2021-05-16T19:43:00.6423548Z ** libs 2021-05-16T19:43:00.6497125Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-16T19:43:00.8511250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-16T19:43:01.1943110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-16T19:43:01.7676357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-16T19:43:02.0042321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-16T19:43:02.5721116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-16T19:43:02.6561725Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-16T19:43:02.8793970Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-16T19:43:02.9387653Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:43:02.9620780Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-16T19:43:03.1181577Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-16T19:43:03.1744716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-16T19:43:03.2513833Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-16T19:43:03.5641879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-16T19:43:03.6868521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-16T19:43:04.3078881Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-16T19:43:04.4343543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-16T19:43:04.6942528Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:43:04.7434514Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-16T19:43:04.7459635Z ** R 2021-05-16T19:43:04.7524251Z ** demo 2021-05-16T19:43:04.7528465Z ** inst 2021-05-16T19:43:04.7546918Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:43:05.3005676Z ** help 2021-05-16T19:43:05.3478093Z *** installing help indices 2021-05-16T19:43:05.3790979Z ** building package indices 2021-05-16T19:43:05.5939131Z ** installing vignettes 2021-05-16T19:43:05.6014087Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:43:05.8129642Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:43:05.8322691Z ** testing if installed package can be loaded from final location 2021-05-16T19:43:06.0211649Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:43:06.0233314Z * DONE (digest) 2021-05-16T19:43:06.2603672Z * installing *source* package ‘brio’ ... 2021-05-16T19:43:06.2624668Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-16T19:43:06.2628096Z ** using staged installation 2021-05-16T19:43:06.2827966Z ** libs 2021-05-16T19:43:06.2890038Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-16T19:43:06.3301506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-16T19:43:06.3905921Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:43:06.4377795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-16T19:43:06.4930125Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-16T19:43:06.5519553Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-16T19:43:06.6434911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-16T19:43:06.6941543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-16T19:43:06.7599022Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:43:06.7914582Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-16T19:43:06.7915250Z ** R 2021-05-16T19:43:06.7930550Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:43:07.0390528Z ** help 2021-05-16T19:43:07.0600453Z *** installing help indices 2021-05-16T19:43:07.0810824Z ** building package indices 2021-05-16T19:43:07.2888757Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:43:07.4881272Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:43:07.5075223Z ** testing if installed package can be loaded from final location 2021-05-16T19:43:07.6953530Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:43:07.6963327Z * DONE (brio) 2021-05-16T19:43:08.0035976Z * installing *source* package ‘xml2’ ... 2021-05-16T19:43:08.0075326Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-16T19:43:08.0076516Z ** using staged installation 2021-05-16T19:43:08.0249863Z Found pkg-config cflags and libs! 2021-05-16T19:43:08.1135871Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-16T19:43:08.1137085Z Using PKG_LIBS=-lxml2 2021-05-16T19:43:08.3071801Z ** libs 2021-05-16T19:43:08.3127891Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-16T19:43:08.8167443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:43:08.8649525Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-16T19:43:09.4321128Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-16T19:43:09.8741785Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-16T19:43:10.6495926Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-16T19:43:12.6368923Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-16T19:43:13.1861980Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-16T19:43:13.8022882Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-16T19:43:14.2814941Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-16T19:43:14.7622447Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:43:14.8599613Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-16T19:43:14.8629357Z ** R 2021-05-16T19:43:14.8747612Z ** inst 2021-05-16T19:43:14.8762091Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:43:15.8454291Z ** help 2021-05-16T19:43:15.9268039Z *** installing help indices 2021-05-16T19:43:15.9763055Z ** building package indices 2021-05-16T19:43:16.2222891Z ** installing vignettes 2021-05-16T19:43:16.2342764Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:43:16.4407384Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:43:16.4643757Z ** testing if installed package can be loaded from final location 2021-05-16T19:43:16.6754408Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:43:16.6778749Z * DONE (xml2) 2021-05-16T19:43:16.9804953Z * installing *source* package ‘xfun’ ... 2021-05-16T19:43:16.9841853Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-16T19:43:16.9843533Z ** using staged installation 2021-05-16T19:43:16.9988949Z ** libs 2021-05-16T19:43:17.0069930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T19:43:17.1191360Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:43:17.1677457Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:43:17.2034811Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-16T19:43:17.2038643Z ** R 2021-05-16T19:43:17.2188175Z ** inst 2021-05-16T19:43:17.2201162Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:43:18.5721956Z ** help 2021-05-16T19:43:18.7194968Z *** installing help indices 2021-05-16T19:43:18.8209918Z ** building package indices 2021-05-16T19:43:19.1313633Z ** installing vignettes 2021-05-16T19:43:19.1355926Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:43:19.3400236Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:43:19.3589047Z ** testing if installed package can be loaded from final location 2021-05-16T19:43:19.5640878Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:43:19.5654752Z * DONE (xfun) 2021-05-16T19:43:22.3959822Z * installing *source* package ‘stringi’ ... 2021-05-16T19:43:22.5261784Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-16T19:43:22.5262798Z ** using staged installation 2021-05-16T19:43:22.6658692Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-16T19:43:22.6660825Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-16T19:43:22.8543785Z checking for endianness... little 2021-05-16T19:43:23.0297151Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-16T19:43:23.2006687Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-16T19:43:23.2011938Z checking for cat... /usr/bin/cat 2021-05-16T19:43:23.4583408Z checking for local ICUDT_DIR... icu69/data 2021-05-16T19:43:23.4584478Z checking for gcc... gcc 2021-05-16T19:43:23.5236283Z checking whether the C compiler works... yes 2021-05-16T19:43:23.5238118Z checking for C compiler default output file name... a.out 2021-05-16T19:43:23.5671197Z checking for suffix of executables... 2021-05-16T19:43:23.6173389Z checking whether we are cross compiling... no 2021-05-16T19:43:23.6441734Z checking for suffix of object files... o 2021-05-16T19:43:23.6684560Z checking whether we are using the GNU C compiler... yes 2021-05-16T19:43:23.6908995Z checking whether gcc accepts -g... yes 2021-05-16T19:43:23.7298246Z checking for gcc option to accept ISO C89... none needed 2021-05-16T19:43:23.7517586Z checking how to run the C preprocessor... gcc -E 2021-05-16T19:43:23.7763060Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-16T19:43:23.7781271Z checking for egrep... /usr/bin/grep -E 2021-05-16T19:43:23.9004020Z checking for ANSI C header files... yes 2021-05-16T19:43:23.9324531Z checking for sys/types.h... yes 2021-05-16T19:43:23.9694514Z checking for sys/stat.h... yes 2021-05-16T19:43:24.0105192Z checking for stdlib.h... yes 2021-05-16T19:43:24.0491154Z checking for string.h... yes 2021-05-16T19:43:24.0882049Z checking for memory.h... yes 2021-05-16T19:43:24.1273269Z checking for strings.h... yes 2021-05-16T19:43:24.1656261Z checking for inttypes.h... yes 2021-05-16T19:43:24.2038278Z checking for stdint.h... yes 2021-05-16T19:43:24.2459345Z checking for unistd.h... yes 2021-05-16T19:43:24.2969263Z checking elf.h usability... yes 2021-05-16T19:43:24.3082857Z checking elf.h presence... yes 2021-05-16T19:43:24.3083889Z checking for elf.h... yes 2021-05-16T19:43:24.3653519Z checking whether we are using the GNU C++ compiler... yes 2021-05-16T19:43:24.3893047Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-16T19:43:24.7353050Z checking whether the C++ compiler supports the long long type... yes 2021-05-16T19:43:24.7616834Z checking whether the compiler implements namespaces... yes 2021-05-16T19:43:24.9030105Z checking whether the compiler supports Standard Template Library... yes 2021-05-16T19:43:25.4693496Z checking whether std::map is available... yes 2021-05-16T19:43:25.4721462Z checking for pkg-config... /usr/bin/pkg-config 2021-05-16T19:43:25.4889032Z checking with pkg-config for the system ICU4C... 66.1 2021-05-16T19:43:25.4914026Z checking for ICU4C >= 55... yes 2021-05-16T19:43:25.4991439Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-16T19:43:25.8694567Z checking whether an ICU4C-based project can be built... yes 2021-05-16T19:43:25.9381455Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-16T19:43:26.2358639Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-16T19:43:27.0457925Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-16T19:43:27.6792908Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-16T19:43:27.7191062Z configure: creating ./config.status 2021-05-16T19:43:27.8097048Z config.status: creating src/Makevars 2021-05-16T19:43:27.8278494Z config.status: creating src/uconfig_local.h 2021-05-16T19:43:27.8456215Z config.status: creating src/install.libs.R 2021-05-16T19:43:27.8624866Z 2021-05-16T19:43:27.8625826Z *** stringi configure summary: 2021-05-16T19:43:27.8626533Z ICU_FOUND=1 2021-05-16T19:43:27.8627209Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-16T19:43:27.8628643Z STRINGI_CFLAGS= -fpic 2021-05-16T19:43:27.8629785Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-16T19:43:27.8630865Z STRINGI_CXXFLAGS= -fpic 2021-05-16T19:43:27.8632021Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-16T19:43:27.8633896Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-16T19:43:27.8634673Z 2021-05-16T19:43:27.8635389Z *** Compiler settings used: 2021-05-16T19:43:27.8635831Z CC=gcc 2021-05-16T19:43:27.8636707Z LD=g++ -std=gnu++14 2021-05-16T19:43:27.8637327Z CFLAGS=-g -O2 -fpic 2021-05-16T19:43:27.8638113Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-16T19:43:27.8638830Z CXX=g++ -std=gnu++11 2021-05-16T19:43:27.8639628Z CXXFLAGS=-g -O2 -fpic 2021-05-16T19:43:27.8640111Z LDFLAGS= 2021-05-16T19:43:27.8640513Z LIBS= 2021-05-16T19:43:27.8640781Z 2021-05-16T19:43:27.9021744Z ** libs 2021-05-16T19:43:27.9117787Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-16T19:43:28.6262587Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-16T19:43:29.2924510Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-16T19:43:30.0341890Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-16T19:43:30.8226669Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-16T19:43:31.3662284Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-16T19:43:32.2706828Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-16T19:43:32.8730541Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-16T19:43:33.4825064Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-16T19:43:34.0939193Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-16T19:43:34.7903441Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-16T19:43:35.4651294Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-16T19:43:36.2248539Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-16T19:43:36.9538910Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-16T19:43:37.5961513Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-16T19:43:38.6060173Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-16T19:43:40.2693897Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-16T19:43:41.0047046Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-16T19:43:41.7249078Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-16T19:43:42.2700050Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-16T19:43:42.8076560Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-16T19:43:43.7723152Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-16T19:43:44.4771355Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-16T19:43:45.1249699Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-16T19:43:45.9249635Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-16T19:43:46.7974508Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-16T19:43:47.4090239Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-16T19:43:48.0848286Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-16T19:43:48.7424709Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-16T19:43:49.6284585Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-16T19:43:50.5265817Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-16T19:43:51.5839752Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-16T19:43:52.4717618Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-16T19:43:53.2551165Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-16T19:43:54.0457329Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-16T19:43:54.7720016Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-16T19:43:55.4629988Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-16T19:43:56.1655724Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-16T19:43:56.8796785Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-16T19:43:57.7927855Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-16T19:43:58.6622818Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-16T19:43:59.6147991Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-16T19:44:00.5149761Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-16T19:44:01.2981184Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-16T19:44:02.0759527Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-16T19:44:02.6506372Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-16T19:44:03.4323719Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-16T19:44:04.1674089Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-16T19:44:04.9227216Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-16T19:44:05.8609964Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-16T19:44:06.1512883Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-16T19:44:06.9390303Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-16T19:44:07.7690749Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-16T19:44:08.6551822Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-16T19:44:09.4801681Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-16T19:44:10.2622761Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-16T19:44:10.9634801Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-16T19:44:10.9804346Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-16T19:44:11.8644800Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-16T19:44:12.5001629Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-16T19:44:13.1078453Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-16T19:44:13.9395050Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-16T19:44:14.7384998Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-16T19:44:15.7447288Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-16T19:44:16.4857984Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-16T19:44:17.3494464Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-16T19:44:18.0834336Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-16T19:44:19.7467568Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-16T19:44:20.4106109Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-16T19:44:21.0069829Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-16T19:44:21.9126155Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-16T19:44:22.4983187Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-16T19:44:23.1868441Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-16T19:44:24.0510860Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-16T19:44:24.7905870Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-16T19:44:25.6532692Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-16T19:44:26.3964602Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-16T19:44:27.1400960Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-16T19:44:27.8082907Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-16T19:44:28.4388303Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-16T19:44:29.1146264Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-16T19:44:29.6736798Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-16T19:44:30.2897551Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-16T19:44:31.7621732Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:44:31.9831476Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-16T19:44:32.0689545Z ** R 2021-05-16T19:44:32.1020624Z ** inst 2021-05-16T19:44:32.1029863Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:44:33.1697413Z ** help 2021-05-16T19:44:33.6140258Z *** installing help indices 2021-05-16T19:44:33.8489436Z ** building package indices 2021-05-16T19:44:34.2940453Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:44:34.5066933Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:44:34.5300056Z ** testing if installed package can be loaded from final location 2021-05-16T19:44:34.7454212Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:44:34.7470964Z * DONE (stringi) 2021-05-16T19:44:35.7697887Z * installing *source* package ‘Rcpp’ ... 2021-05-16T19:44:35.8077331Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-16T19:44:35.8078281Z ** using staged installation 2021-05-16T19:44:35.8199836Z ** libs 2021-05-16T19:44:35.8252392Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-16T19:44:39.0132853Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-16T19:44:55.4824234Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-16T19:44:55.6940752Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-16T19:44:59.2663283Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-16T19:45:06.3215819Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-16T19:45:09.6562003Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:45:09.8628879Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-16T19:45:09.8749804Z ** R 2021-05-16T19:45:09.8924725Z ** inst 2021-05-16T19:45:09.9390934Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:12.0735046Z ** help 2021-05-16T19:45:12.1787742Z *** installing help indices 2021-05-16T19:45:12.2473597Z ** building package indices 2021-05-16T19:45:12.5292932Z ** installing vignettes 2021-05-16T19:45:12.5359394Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:12.8297723Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:45:12.8559622Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:13.1774032Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:13.1876325Z * DONE (Rcpp) 2021-05-16T19:45:13.4997936Z * installing *source* package ‘commonmark’ ... 2021-05-16T19:45:13.5040046Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:13.5042164Z ** using staged installation 2021-05-16T19:45:13.5169500Z ** libs 2021-05-16T19:45:13.5232688Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-16T19:45:13.5271748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-16T19:45:13.5765684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:45:13.6291972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-16T19:45:13.6994975Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-16T19:45:13.7538076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-16T19:45:14.0730433Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-16T19:45:14.1824439Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-16T19:45:14.6828339Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-16T19:45:15.4693471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-16T19:45:17.3358436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-16T19:45:20.6964550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-16T19:45:20.8366682Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-16T19:45:20.8891479Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-16T19:45:20.9971764Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-16T19:45:21.0915428Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-16T19:45:21.1908651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-16T19:45:21.4184127Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-16T19:45:21.6387388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-16T19:45:21.7807538Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-16T19:45:21.8310737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-16T19:45:21.8805330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-16T19:45:22.0010178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-16T19:45:22.0349460Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-16T19:45:22.1021355Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-16T19:45:22.1491964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-16T19:45:22.1962101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-16T19:45:22.2561306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-16T19:45:22.3373903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-16T19:45:22.4549982Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-16T19:45:22.5056625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-16T19:45:22.5845699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-16T19:45:22.7688817Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-16T19:45:22.8034178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-16T19:45:22.9510640Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-16T19:45:23.0371944Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-16T19:45:23.3319539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-16T19:45:23.3903390Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-16T19:45:23.4042523Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:45:23.4524710Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-16T19:45:23.4590159Z ** R 2021-05-16T19:45:23.4619179Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:23.7202949Z ** help 2021-05-16T19:45:23.7341879Z *** installing help indices 2021-05-16T19:45:23.7526605Z ** building package indices 2021-05-16T19:45:23.9659837Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:24.1651260Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:45:24.1860289Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:24.3965010Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:24.3966047Z * DONE (commonmark) 2021-05-16T19:45:24.6780553Z * installing *source* package ‘brew’ ... 2021-05-16T19:45:24.6787189Z ** using staged installation 2021-05-16T19:45:24.6879213Z ** R 2021-05-16T19:45:24.6913603Z ** inst 2021-05-16T19:45:24.6942686Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:25.0833581Z ** help 2021-05-16T19:45:25.0961252Z *** installing help indices 2021-05-16T19:45:25.1141286Z ** building package indices 2021-05-16T19:45:25.3231542Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:25.5260981Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:25.7295290Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:25.7303690Z * DONE (brew) 2021-05-16T19:45:25.9797321Z * installing *source* package ‘sessioninfo’ ... 2021-05-16T19:45:25.9817198Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:25.9819149Z ** using staged installation 2021-05-16T19:45:26.0008049Z ** R 2021-05-16T19:45:26.0053301Z ** inst 2021-05-16T19:45:26.0061526Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:26.5073551Z ** help 2021-05-16T19:45:26.5225526Z *** installing help indices 2021-05-16T19:45:26.5419396Z ** building package indices 2021-05-16T19:45:26.7532866Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:27.0114415Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:27.2611143Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:27.2617151Z * DONE (sessioninfo) 2021-05-16T19:45:27.4852715Z * installing *source* package ‘prettyunits’ ... 2021-05-16T19:45:27.4864490Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:27.4866411Z ** using staged installation 2021-05-16T19:45:27.4983187Z ** R 2021-05-16T19:45:27.5025937Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:27.8433454Z ** help 2021-05-16T19:45:27.8692630Z *** installing help indices 2021-05-16T19:45:27.8909329Z ** building package indices 2021-05-16T19:45:28.1105651Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:28.3107018Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:28.4971002Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:28.4983801Z * DONE (prettyunits) 2021-05-16T19:45:29.0579919Z * installing *source* package ‘vctrs’ ... 2021-05-16T19:45:29.0734611Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:29.0736348Z ** using staged installation 2021-05-16T19:45:29.0932428Z ** libs 2021-05-16T19:45:29.1016122Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-16T19:45:29.2289080Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-16T19:45:29.3245648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-16T19:45:29.4196496Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-16T19:45:29.6717197Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-16T19:45:29.7979336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-16T19:45:29.9448885Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-16T19:45:30.0110324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-16T19:45:30.1237670Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-16T19:45:30.2025916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-16T19:45:30.3490838Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-16T19:45:30.5754095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-16T19:45:30.7100321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-16T19:45:30.8064299Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-16T19:45:31.0797022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-16T19:45:31.1506740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-16T19:45:31.5638483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-16T19:45:31.6680587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-16T19:45:31.8078115Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-16T19:45:31.9416632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-16T19:45:32.0078592Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-16T19:45:32.2691957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:45:32.3397695Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-16T19:45:32.6828110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-16T19:45:32.7665170Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-16T19:45:33.5809266Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-16T19:45:33.7527751Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-16T19:45:33.8371243Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-16T19:45:33.9207427Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-16T19:45:34.1008065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-16T19:45:34.2233834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-16T19:45:34.3726045Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-16T19:45:34.5043658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-16T19:45:34.6473769Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-16T19:45:34.9153670Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-16T19:45:35.0230150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-16T19:45:35.1235007Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-16T19:45:35.2566034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-16T19:45:35.8349589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-16T19:45:36.2202827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-16T19:45:36.5231822Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-16T19:45:36.7561426Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-16T19:45:37.1145461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-16T19:45:37.1780984Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-16T19:45:37.3992354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-16T19:45:37.5776750Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-16T19:45:37.6977189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-16T19:45:38.0962285Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-16T19:45:38.2921505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-16T19:45:38.4663176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-16T19:45:38.5989972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-16T19:45:38.6909563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-16T19:45:38.8320476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-16T19:45:38.9799886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-16T19:45:39.1326158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-16T19:45:39.2746353Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-16T19:45:39.3596368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-16T19:45:39.4418166Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-16T19:45:39.5031344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:45:40.2319011Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T19:45:40.2771559Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:45:40.3475545Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-16T19:45:40.3495348Z ** R 2021-05-16T19:45:40.3884048Z ** inst 2021-05-16T19:45:40.3908188Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:43.4105770Z ** help 2021-05-16T19:45:43.7319352Z *** installing help indices 2021-05-16T19:45:43.9410362Z *** copying figures 2021-05-16T19:45:43.9424252Z ** building package indices 2021-05-16T19:45:44.3049247Z ** installing vignettes 2021-05-16T19:45:44.3246207Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:44.5875866Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:45:44.6099463Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:44.9302627Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:44.9355489Z * DONE (vctrs) 2021-05-16T19:45:45.2629703Z * installing *source* package ‘processx’ ... 2021-05-16T19:45:45.2670747Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:45.2671991Z ** using staged installation 2021-05-16T19:45:45.2863895Z ** libs 2021-05-16T19:45:45.2927645Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-16T19:45:45.4494499Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-16T19:45:45.4496111Z supervisor/utils.c -o supervisor/supervisor 2021-05-16T19:45:45.6462705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T19:45:45.7450550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-16T19:45:45.8498131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-16T19:45:45.9219175Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-16T19:45:45.9220629Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-16T19:45:45.9478677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:45:46.0317095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-16T19:45:46.1470192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-16T19:45:46.5368014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-16T19:45:46.6369290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-16T19:45:46.7624263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-16T19:45:46.8705723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-16T19:45:46.9563371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-16T19:45:47.3267624Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-16T19:45:47.4378251Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-16T19:45:47.5788809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-16T19:45:47.6416073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-16T19:45:47.7229723Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:45:47.7556102Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-16T19:45:47.7580756Z ** R 2021-05-16T19:45:47.7732093Z ** inst 2021-05-16T19:45:47.7739850Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:49.5473606Z ** help 2021-05-16T19:45:49.6526286Z *** installing help indices 2021-05-16T19:45:49.7086800Z ** building package indices 2021-05-16T19:45:50.0196851Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:50.2383831Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:45:50.2703846Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:50.5497867Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:50.5516142Z * DONE (processx) 2021-05-16T19:45:50.8369589Z * installing *source* package ‘markdown’ ... 2021-05-16T19:45:50.8397278Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:50.8398511Z ** using staged installation 2021-05-16T19:45:50.8563611Z ** libs 2021-05-16T19:45:50.8629294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-16T19:45:50.9381777Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-16T19:45:50.9975842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-16T19:45:51.1972389Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-16T19:45:51.3178808Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-16T19:45:51.4028784Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-16T19:45:51.4501198Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-16T19:45:51.4978505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-16T19:45:51.7438044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-16T19:45:51.9013884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-16T19:45:53.1510698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-16T19:45:53.2205303Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:45:53.2510408Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-16T19:45:53.2528672Z ** R 2021-05-16T19:45:53.2589123Z ** inst 2021-05-16T19:45:53.2609296Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:53.7431014Z ** help 2021-05-16T19:45:53.7833729Z *** installing help indices 2021-05-16T19:45:53.8133121Z ** building package indices 2021-05-16T19:45:54.0376791Z ** installing vignettes 2021-05-16T19:45:54.0437820Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:54.2461756Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:45:54.2671492Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:54.4909146Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:54.4922085Z * DONE (markdown) 2021-05-16T19:45:54.7424143Z * installing *source* package ‘highr’ ... 2021-05-16T19:45:54.7436543Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:54.7437861Z ** using staged installation 2021-05-16T19:45:54.7609661Z ** R 2021-05-16T19:45:54.7650383Z ** inst 2021-05-16T19:45:54.7662419Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:55.1953816Z ** help 2021-05-16T19:45:55.2056564Z *** installing help indices 2021-05-16T19:45:55.2229943Z ** building package indices 2021-05-16T19:45:55.4513767Z ** installing vignettes 2021-05-16T19:45:55.4578405Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:55.6638367Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:55.9197693Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:55.9206173Z * DONE (highr) 2021-05-16T19:45:56.2964120Z * installing *source* package ‘stringr’ ... 2021-05-16T19:45:56.3006046Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:56.3007581Z ** using staged installation 2021-05-16T19:45:56.3233338Z ** R 2021-05-16T19:45:56.3332141Z ** data 2021-05-16T19:45:56.3339683Z *** moving datasets to lazyload DB 2021-05-16T19:45:56.3570156Z ** inst 2021-05-16T19:45:56.3595234Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:56.9458564Z ** help 2021-05-16T19:45:57.0395093Z *** installing help indices 2021-05-16T19:45:57.0998728Z *** copying figures 2021-05-16T19:45:57.1001122Z ** building package indices 2021-05-16T19:45:57.3649029Z ** installing vignettes 2021-05-16T19:45:57.3712059Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:57.6332139Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:57.8828293Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:57.8841444Z * DONE (stringr) 2021-05-16T19:45:58.1287727Z * installing *source* package ‘rversions’ ... 2021-05-16T19:45:58.1301390Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:58.1302477Z ** using staged installation 2021-05-16T19:45:58.1462161Z ** R 2021-05-16T19:45:58.1503436Z ** inst 2021-05-16T19:45:58.1512684Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:45:58.5169656Z ** help 2021-05-16T19:45:58.5375132Z *** installing help indices 2021-05-16T19:45:58.5600967Z *** copying figures 2021-05-16T19:45:58.5603427Z ** building package indices 2021-05-16T19:45:58.8059173Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:45:59.0615173Z ** testing if installed package can be loaded from final location 2021-05-16T19:45:59.2916704Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:45:59.2922729Z * DONE (rversions) 2021-05-16T19:45:59.7578802Z * installing *source* package ‘pillar’ ... 2021-05-16T19:45:59.7691831Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-16T19:45:59.7693114Z ** using staged installation 2021-05-16T19:45:59.7899042Z ** R 2021-05-16T19:45:59.8098726Z ** inst 2021-05-16T19:45:59.8135443Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:01.7956921Z ** help 2021-05-16T19:46:01.8883207Z *** installing help indices 2021-05-16T19:46:01.9570463Z *** copying figures 2021-05-16T19:46:01.9576685Z ** building package indices 2021-05-16T19:46:02.2273674Z ** installing vignettes 2021-05-16T19:46:02.2339541Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:02.5646366Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:02.9350102Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:02.9375160Z * DONE (pillar) 2021-05-16T19:46:03.2355973Z * installing *source* package ‘callr’ ... 2021-05-16T19:46:03.2388150Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:03.2389406Z ** using staged installation 2021-05-16T19:46:03.2547022Z ** R 2021-05-16T19:46:03.2699855Z ** inst 2021-05-16T19:46:03.2708430Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:06.8268768Z ** help 2021-05-16T19:46:06.9829279Z *** installing help indices 2021-05-16T19:46:07.0761911Z ** building package indices 2021-05-16T19:46:07.3588359Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:07.5959378Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:07.8902116Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:07.8934327Z * DONE (callr) 2021-05-16T19:46:08.4171384Z * installing *source* package ‘knitr’ ... 2021-05-16T19:46:08.4289626Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:08.4291120Z ** using staged installation 2021-05-16T19:46:08.4667221Z ** R 2021-05-16T19:46:08.5073324Z ** demo 2021-05-16T19:46:08.5080875Z ** inst 2021-05-16T19:46:08.5189913Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:13.5740086Z ** help 2021-05-16T19:46:13.7820276Z *** installing help indices 2021-05-16T19:46:13.9168374Z ** building package indices 2021-05-16T19:46:14.2756095Z ** installing vignettes 2021-05-16T19:46:14.2852879Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:14.5091329Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:14.8831812Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:14.8889547Z * DONE (knitr) 2021-05-16T19:46:15.1189027Z * installing *source* package ‘xopen’ ... 2021-05-16T19:46:15.1198500Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:15.1199697Z ** using staged installation 2021-05-16T19:46:15.1358973Z ** R 2021-05-16T19:46:15.1386725Z ** inst 2021-05-16T19:46:15.1395202Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:15.4033365Z ** help 2021-05-16T19:46:15.4161171Z *** installing help indices 2021-05-16T19:46:15.4398624Z ** building package indices 2021-05-16T19:46:15.6748126Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:15.8769291Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:16.0699312Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:16.0705395Z * DONE (xopen) 2021-05-16T19:46:16.5134400Z * installing *source* package ‘tibble’ ... 2021-05-16T19:46:16.5236739Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:16.5237775Z ** using staged installation 2021-05-16T19:46:16.5463603Z ** libs 2021-05-16T19:46:16.5523882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-16T19:46:16.6073322Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-16T19:46:16.6794070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:46:16.7197187Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-16T19:46:16.8279727Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:46:16.8555575Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-16T19:46:16.8557274Z ** R 2021-05-16T19:46:16.8717451Z ** inst 2021-05-16T19:46:16.8749192Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:18.8447147Z ** help 2021-05-16T19:46:18.9266349Z *** installing help indices 2021-05-16T19:46:18.9937191Z *** copying figures 2021-05-16T19:46:18.9942693Z ** building package indices 2021-05-16T19:46:19.2588543Z ** installing vignettes 2021-05-16T19:46:19.2674704Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:19.6666404Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:46:19.6882303Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:20.1235090Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:20.1259010Z * DONE (tibble) 2021-05-16T19:46:20.4301907Z * installing *source* package ‘pkgbuild’ ... 2021-05-16T19:46:20.4324644Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:20.4326310Z ** using staged installation 2021-05-16T19:46:20.4552388Z ** R 2021-05-16T19:46:20.4675641Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:21.8852502Z ** help 2021-05-16T19:46:21.9252093Z *** installing help indices 2021-05-16T19:46:21.9634374Z ** building package indices 2021-05-16T19:46:22.2407591Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:22.5253198Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:22.8491805Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:22.8504471Z * DONE (pkgbuild) 2021-05-16T19:46:23.2700167Z * installing *source* package ‘roxygen2’ ... 2021-05-16T19:46:23.2781042Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:23.2782233Z ** using staged installation 2021-05-16T19:46:23.2996541Z ** libs 2021-05-16T19:46:23.3055777Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-16T19:46:28.2896878Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-16T19:46:31.6040375Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-16T19:46:34.9237942Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-16T19:46:38.3806719Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-16T19:46:43.6322574Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-16T19:46:47.0438264Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:46:47.1484621Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-16T19:46:47.1530486Z ** R 2021-05-16T19:46:47.1848085Z ** inst 2021-05-16T19:46:47.1867444Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:51.2926353Z ** help 2021-05-16T19:46:51.3739189Z *** installing help indices 2021-05-16T19:46:51.4380996Z *** copying figures 2021-05-16T19:46:51.4385193Z ** building package indices 2021-05-16T19:46:51.7037597Z ** installing vignettes 2021-05-16T19:46:51.7144564Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:52.1225184Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:46:52.1451363Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:52.6004258Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:52.6044739Z * DONE (roxygen2) 2021-05-16T19:46:52.8614188Z * installing *source* package ‘rematch2’ ... 2021-05-16T19:46:52.8629014Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:52.8630890Z ** using staged installation 2021-05-16T19:46:52.8776257Z ** R 2021-05-16T19:46:52.8822520Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:53.4153432Z ** help 2021-05-16T19:46:53.4439640Z *** installing help indices 2021-05-16T19:46:53.4673297Z ** building package indices 2021-05-16T19:46:53.6840901Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:54.0740796Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:54.4540623Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:54.4546998Z * DONE (rematch2) 2021-05-16T19:46:54.7360634Z * installing *source* package ‘rcmdcheck’ ... 2021-05-16T19:46:54.7388267Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:54.7389641Z ** using staged installation 2021-05-16T19:46:54.7541474Z ** R 2021-05-16T19:46:54.7624818Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:56.1394132Z ** help 2021-05-16T19:46:56.1779065Z *** installing help indices 2021-05-16T19:46:56.2102574Z ** building package indices 2021-05-16T19:46:56.4439073Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:56.7699808Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:57.1233983Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:57.1235337Z * DONE (rcmdcheck) 2021-05-16T19:46:57.3931180Z * installing *source* package ‘waldo’ ... 2021-05-16T19:46:57.3954763Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:57.3956776Z ** using staged installation 2021-05-16T19:46:57.4116241Z ** R 2021-05-16T19:46:57.4182136Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:46:58.1849705Z ** help 2021-05-16T19:46:58.2009379Z *** installing help indices 2021-05-16T19:46:58.2211868Z *** copying figures 2021-05-16T19:46:58.2213601Z ** building package indices 2021-05-16T19:46:58.4365766Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:46:58.7074326Z ** testing if installed package can be loaded from final location 2021-05-16T19:46:58.9923226Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:46:58.9924230Z * DONE (waldo) 2021-05-16T19:46:59.5763601Z * installing *source* package ‘testthat’ ... 2021-05-16T19:46:59.5911128Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-16T19:46:59.5913920Z ** using staged installation 2021-05-16T19:46:59.6195388Z ** libs 2021-05-16T19:46:59.6250494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:46:59.6809528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-16T19:46:59.7427931Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-16T19:47:00.6615019Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-16T19:47:01.3220412Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-16T19:47:19.2496801Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:47:19.4269632Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-16T19:47:19.4382183Z ** R 2021-05-16T19:47:19.4756685Z ** inst 2021-05-16T19:47:19.4791031Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:47:29.9400658Z ** help 2021-05-16T19:47:30.1966604Z *** installing help indices 2021-05-16T19:47:30.3926997Z *** copying figures 2021-05-16T19:47:30.3932731Z ** building package indices 2021-05-16T19:47:30.7798000Z ** installing vignettes 2021-05-16T19:47:30.7926227Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:47:31.0300150Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:47:31.0588866Z ** testing if installed package can be loaded from final location 2021-05-16T19:47:31.5754086Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:47:31.5842742Z * DONE (testthat) 2021-05-16T19:47:31.9941338Z * installing *source* package ‘devtools’ ... 2021-05-16T19:47:32.0003440Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-16T19:47:32.0004388Z ** using staged installation 2021-05-16T19:47:32.0332927Z ** R 2021-05-16T19:47:32.0482928Z ** inst 2021-05-16T19:47:32.0494801Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:47:34.0073595Z ** help 2021-05-16T19:47:34.1314001Z *** installing help indices 2021-05-16T19:47:34.2138724Z *** copying figures 2021-05-16T19:47:34.2140976Z ** building package indices 2021-05-16T19:47:34.5153559Z ** installing vignettes 2021-05-16T19:47:34.5217669Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:47:35.2893100Z ** testing if installed package can be loaded from final location 2021-05-16T19:47:36.0874086Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:47:36.0875411Z * DONE (devtools) 2021-05-16T19:47:36.0991970Z 2021-05-16T19:47:36.0993623Z The downloaded source packages are in 2021-05-16T19:47:36.0995127Z ‘/tmp/RtmpEn4Cob/downloaded_packages’ 2021-05-16T19:47:36.2104488Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-16T19:47:37.2383698Z 2021-05-16T19:47:37.5837861Z 2021-05-16T19:47:37.5841390Z checking for file ‘/tmp/RtmpEn4Cob/remotes72af60c9773f/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-16T19:47:37.5954464Z 2021-05-16T19:47:37.5957565Z ✔ checking for file ‘/tmp/RtmpEn4Cob/remotes72af60c9773f/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-16T19:47:37.5970987Z 2021-05-16T19:47:37.5994066Z 2021-05-16T19:47:37.5996140Z ─ preparing ‘desc’: 2021-05-16T19:47:37.6005831Z 2021-05-16T19:47:37.6007961Z 2021-05-16T19:47:37.6120424Z checking DESCRIPTION meta-information ... 2021-05-16T19:47:37.6144195Z 2021-05-16T19:47:37.6146420Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:47:37.6865662Z 2021-05-16T19:47:37.6907299Z 2021-05-16T19:47:37.6911705Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:47:37.6928588Z 2021-05-16T19:47:37.7072314Z 2021-05-16T19:47:37.7076417Z ─ checking for empty or unneeded directories 2021-05-16T19:47:37.7079799Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T19:47:37.7088410Z 2021-05-16T19:47:37.7115027Z 2021-05-16T19:47:37.7117176Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-16T19:47:37.8211025Z 2021-05-16T19:47:37.8220210Z 2021-05-16T19:47:37.8223537Z 2021-05-16T19:47:37.8330120Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:47:37.8331478Z (as ‘lib’ is unspecified) 2021-05-16T19:47:38.1700401Z * installing *source* package ‘desc’ ... 2021-05-16T19:47:38.1738823Z ** using staged installation 2021-05-16T19:47:38.1964932Z ** R 2021-05-16T19:47:38.2118477Z ** inst 2021-05-16T19:47:38.2135725Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:47:39.9835811Z ** help 2021-05-16T19:47:40.1268722Z *** installing help indices 2021-05-16T19:47:40.2320871Z ** building package indices 2021-05-16T19:47:40.5322006Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:47:40.7390391Z ** testing if installed package can be loaded from final location 2021-05-16T19:47:40.9865518Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:47:40.9866872Z * DONE (desc) 2021-05-16T19:47:41.2023956Z 2021-05-16T19:47:41.2025129Z 2021-05-16T19:47:41.2039808Z checking for file ‘/tmp/RtmpEn4Cob/remotes72aff809193/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-16T19:47:41.2060914Z 2021-05-16T19:47:41.2062839Z ✔ checking for file ‘/tmp/RtmpEn4Cob/remotes72aff809193/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-16T19:47:41.2166910Z 2021-05-16T19:47:41.2167853Z 2021-05-16T19:47:41.2168821Z ─ preparing ‘ghtravis’: 2021-05-16T19:47:41.2169182Z 2021-05-16T19:47:41.2169549Z 2021-05-16T19:47:41.2294910Z checking DESCRIPTION meta-information ... 2021-05-16T19:47:41.2295540Z 2021-05-16T19:47:41.2296352Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:47:41.2719063Z 2021-05-16T19:47:41.2719684Z 2021-05-16T19:47:41.2720016Z 2021-05-16T19:47:41.2720356Z 2021-05-16T19:47:41.2720696Z 2021-05-16T19:47:41.2721018Z 2021-05-16T19:47:41.2796811Z checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:47:41.2797489Z 2021-05-16T19:47:41.2798487Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:47:41.2809198Z ─ checking for empty or unneeded directories 2021-05-16T19:47:41.2812953Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T19:47:41.2888694Z 2021-05-16T19:47:41.2910904Z 2021-05-16T19:47:41.2913334Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-16T19:47:41.3147666Z 2021-05-16T19:47:41.3150407Z 2021-05-16T19:47:41.3151917Z 2021-05-16T19:47:41.3533474Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:47:41.3535741Z (as ‘lib’ is unspecified) 2021-05-16T19:47:41.6147202Z * installing *source* package ‘ghtravis’ ... 2021-05-16T19:47:41.6150846Z ** using staged installation 2021-05-16T19:47:41.6318834Z ** R 2021-05-16T19:47:41.6415699Z ** inst 2021-05-16T19:47:41.6425223Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:47:43.0113551Z ** help 2021-05-16T19:47:43.0707144Z *** installing help indices 2021-05-16T19:47:43.1183232Z ** building package indices 2021-05-16T19:47:43.3759909Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:47:44.1094459Z ** testing if installed package can be loaded from final location 2021-05-16T19:47:44.9071521Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:47:44.9091298Z * DONE (ghtravis) 2021-05-16T19:47:44.9186270Z Using github PAT from envvar GITHUB_PAT 2021-05-16T19:47:45.0767457Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-16T19:47:46.0914202Z 2021-05-16T19:47:46.0916314Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-16T19:47:46.0917328Z generics (NA -> 0.1.0) [CRAN] 2021-05-16T19:47:46.0918476Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-16T19:47:46.0920181Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-16T19:47:46.0921021Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-16T19:47:46.0921814Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-16T19:47:46.0934104Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:47:46.0935981Z (as ‘lib’ is unspecified) 2021-05-16T19:48:01.0599023Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-16T19:48:01.4524160Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-16T19:48:01.4597304Z ================================================== 2021-05-16T19:48:01.4598143Z downloaded 89 KB 2021-05-16T19:48:01.4598686Z 2021-05-16T19:48:01.4699829Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-16T19:48:01.9332803Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-16T19:48:01.9476746Z ================================================== 2021-05-16T19:48:01.9478357Z downloaded 116 KB 2021-05-16T19:48:01.9479015Z 2021-05-16T19:48:01.9519103Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-16T19:48:02.3033745Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-16T19:48:02.3165317Z ================================================== 2021-05-16T19:48:02.3166052Z downloaded 195 KB 2021-05-16T19:48:02.3166416Z 2021-05-16T19:48:02.3202987Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-16T19:48:02.7156800Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-16T19:48:02.7416655Z ================================================== 2021-05-16T19:48:02.7417513Z downloaded 932 KB 2021-05-16T19:48:02.7418659Z 2021-05-16T19:48:02.7454080Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-16T19:48:03.1416167Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-16T19:48:03.2531844Z ================================================== 2021-05-16T19:48:03.2533026Z downloaded 690 KB 2021-05-16T19:48:03.2533532Z 2021-05-16T19:48:03.5566296Z * installing *source* package ‘tidyselect’ ... 2021-05-16T19:48:03.5598613Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:03.5600880Z ** using staged installation 2021-05-16T19:48:03.5774148Z ** R 2021-05-16T19:48:03.5872364Z ** inst 2021-05-16T19:48:03.5884200Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:04.6246439Z ** help 2021-05-16T19:48:04.6860019Z *** installing help indices 2021-05-16T19:48:04.7305295Z ** building package indices 2021-05-16T19:48:04.9833500Z ** installing vignettes 2021-05-16T19:48:04.9865873Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:05.2663550Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:05.5549456Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:05.5575239Z * DONE (tidyselect) 2021-05-16T19:48:05.8438140Z * installing *source* package ‘generics’ ... 2021-05-16T19:48:05.8477560Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:05.8478978Z ** using staged installation 2021-05-16T19:48:05.8621754Z ** R 2021-05-16T19:48:05.8680428Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:06.2031812Z ** help 2021-05-16T19:48:06.3273899Z *** installing help indices 2021-05-16T19:48:06.3753988Z ** building package indices 2021-05-16T19:48:06.6407162Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:06.8341533Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:07.0345542Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:07.0351329Z * DONE (generics) 2021-05-16T19:48:07.3211132Z * installing *source* package ‘cpp11’ ... 2021-05-16T19:48:07.3248583Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:07.3251274Z ** using staged installation 2021-05-16T19:48:07.3417577Z ** R 2021-05-16T19:48:07.3464726Z ** inst 2021-05-16T19:48:07.3495613Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:07.7687265Z ** help 2021-05-16T19:48:07.7906074Z *** installing help indices 2021-05-16T19:48:07.8098967Z ** building package indices 2021-05-16T19:48:08.0131488Z ** installing vignettes 2021-05-16T19:48:08.0187668Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:08.2079537Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:08.3963968Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:08.3978648Z * DONE (cpp11) 2021-05-16T19:48:08.9109013Z * installing *source* package ‘dplyr’ ... 2021-05-16T19:48:08.9255002Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:08.9256244Z ** using staged installation 2021-05-16T19:48:08.9499327Z ** libs 2021-05-16T19:48:08.9562158Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-16T19:48:09.1251252Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-16T19:48:09.3091641Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-16T19:48:09.4503950Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-16T19:48:10.0228568Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-16T19:48:10.1470844Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-16T19:48:10.2698405Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-16T19:48:10.3922602Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-16T19:48:10.5293450Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-16T19:48:10.6624290Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-16T19:48:10.7694129Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-16T19:48:10.9485407Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:48:11.0195374Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-16T19:48:11.0196809Z ** R 2021-05-16T19:48:11.0649460Z ** data 2021-05-16T19:48:11.0654831Z *** moving datasets to lazyload DB 2021-05-16T19:48:11.1669699Z ** inst 2021-05-16T19:48:11.1697960Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:15.9313543Z ** help 2021-05-16T19:48:16.4401804Z *** installing help indices 2021-05-16T19:48:16.6878183Z *** copying figures 2021-05-16T19:48:16.6884596Z ** building package indices 2021-05-16T19:48:17.0673649Z ** installing vignettes 2021-05-16T19:48:17.0814012Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:17.5688104Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:48:17.5880380Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:18.1549642Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:18.1600260Z * DONE (dplyr) 2021-05-16T19:48:18.5441682Z * installing *source* package ‘tidyr’ ... 2021-05-16T19:48:18.5520434Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:18.5521933Z ** using staged installation 2021-05-16T19:48:18.5717263Z ** libs 2021-05-16T19:48:18.5782897Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-16T19:48:19.6269330Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-16T19:48:19.9809190Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-16T19:48:21.7216208Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-16T19:48:23.2004111Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:48:23.2813822Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-16T19:48:23.2838527Z ** R 2021-05-16T19:48:23.3011580Z ** data 2021-05-16T19:48:23.3023850Z *** moving datasets to lazyload DB 2021-05-16T19:48:23.5081887Z ** inst 2021-05-16T19:48:23.5105518Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:25.2475188Z ** help 2021-05-16T19:48:25.3761454Z *** installing help indices 2021-05-16T19:48:25.4670400Z *** copying figures 2021-05-16T19:48:25.4676451Z ** building package indices 2021-05-16T19:48:25.7464965Z ** installing vignettes 2021-05-16T19:48:25.7576222Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:26.3028422Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:48:26.3228658Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:26.8205177Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:26.8223828Z * DONE (tidyr) 2021-05-16T19:48:26.8319991Z 2021-05-16T19:48:26.8320982Z The downloaded source packages are in 2021-05-16T19:48:26.8322589Z ‘/tmp/RtmpEn4Cob/downloaded_packages’ 2021-05-16T19:48:27.0260496Z 2021-05-16T19:48:27.0275768Z checking for file ‘/tmp/RtmpEn4Cob/remotes72af3735eff7/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-16T19:48:27.0295897Z 2021-05-16T19:48:27.0298597Z ✔ checking for file ‘/tmp/RtmpEn4Cob/remotes72af3735eff7/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-16T19:48:27.0353126Z 2021-05-16T19:48:27.0366457Z 2021-05-16T19:48:27.0368381Z ─ preparing ‘aghast’: 2021-05-16T19:48:27.0375825Z 2021-05-16T19:48:27.0377905Z 2021-05-16T19:48:27.0461183Z checking DESCRIPTION meta-information ... 2021-05-16T19:48:27.0484974Z 2021-05-16T19:48:27.0487167Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:48:27.0786421Z 2021-05-16T19:48:27.0818107Z 2021-05-16T19:48:27.0820716Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:48:27.0828256Z 2021-05-16T19:48:27.0848364Z 2021-05-16T19:48:27.0850369Z ─ checking for empty or unneeded directories 2021-05-16T19:48:27.0853225Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T19:48:27.0876985Z 2021-05-16T19:48:27.0897412Z 2021-05-16T19:48:27.0899364Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-16T19:48:27.1010356Z 2021-05-16T19:48:27.1012651Z 2021-05-16T19:48:27.1014176Z 2021-05-16T19:48:27.1086058Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:48:27.1087202Z (as ‘lib’ is unspecified) 2021-05-16T19:48:27.3266121Z * installing *source* package ‘aghast’ ... 2021-05-16T19:48:27.3268652Z ** using staged installation 2021-05-16T19:48:27.3441919Z ** R 2021-05-16T19:48:27.3503458Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:27.7933560Z ** help 2021-05-16T19:48:27.8248288Z *** installing help indices 2021-05-16T19:48:27.8476815Z ** building package indices 2021-05-16T19:48:28.0496148Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:28.2351785Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:28.4315122Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:28.4321377Z * DONE (aghast) 2021-05-16T19:48:28.4406270Z Installing 1 packages: covr 2021-05-16T19:48:28.4414893Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:48:43.3694233Z (as ‘lib’ is unspecified) 2021-05-16T19:48:43.3696007Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-16T19:48:43.3697496Z 2021-05-16T19:48:43.3705762Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-16T19:48:43.6531857Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-16T19:48:43.6590467Z ================================================== 2021-05-16T19:48:43.6591162Z downloaded 81 KB 2021-05-16T19:48:43.6591579Z 2021-05-16T19:48:43.6623097Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-16T19:48:44.0606448Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-16T19:48:44.0660504Z ================================================== 2021-05-16T19:48:44.0661082Z downloaded 89 KB 2021-05-16T19:48:44.0661399Z 2021-05-16T19:48:44.0699270Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-16T19:48:44.5765469Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-16T19:48:44.5930159Z ================================================== 2021-05-16T19:48:44.5931063Z downloaded 144 KB 2021-05-16T19:48:44.5931698Z 2021-05-16T19:48:44.8677046Z * installing *source* package ‘lazyeval’ ... 2021-05-16T19:48:44.8704654Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:44.8706633Z ** using staged installation 2021-05-16T19:48:44.8832934Z ** libs 2021-05-16T19:48:44.8880802Z 2021-05-16T19:48:44.8882219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-16T19:48:44.9555357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:48:44.9960728Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-16T19:48:45.0605124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-16T19:48:45.1403367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-16T19:48:45.2104544Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T19:48:45.2938114Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:48:45.3194605Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-16T19:48:45.3208326Z ** R 2021-05-16T19:48:45.3275120Z ** inst 2021-05-16T19:48:45.3291420Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:45.8717001Z ** help 2021-05-16T19:48:45.9291351Z *** installing help indices 2021-05-16T19:48:45.9740430Z ** building package indices 2021-05-16T19:48:46.2273768Z ** installing vignettes 2021-05-16T19:48:46.2333755Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:46.4319233Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:48:46.4520902Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:46.6498165Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:46.6506549Z * DONE (lazyeval) 2021-05-16T19:48:46.9206002Z * installing *source* package ‘rex’ ... 2021-05-16T19:48:46.9234454Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:46.9237797Z ** using staged installation 2021-05-16T19:48:46.9388519Z ** R 2021-05-16T19:48:46.9449642Z ** inst 2021-05-16T19:48:46.9460220Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:47.4713413Z ** help 2021-05-16T19:48:47.5307110Z *** installing help indices 2021-05-16T19:48:47.5719715Z ** building package indices 2021-05-16T19:48:47.8015827Z ** installing vignettes 2021-05-16T19:48:47.8115716Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:48.0052312Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:48.1965248Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:48.1973306Z * DONE (rex) 2021-05-16T19:48:48.5654738Z * installing *source* package ‘covr’ ... 2021-05-16T19:48:48.5709762Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-16T19:48:48.5711317Z ** using staged installation 2021-05-16T19:48:48.5924106Z ** libs 2021-05-16T19:48:48.5980017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-16T19:48:48.6593304Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:48:48.6755734Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-16T19:48:48.6769046Z ** R 2021-05-16T19:48:48.6921803Z ** inst 2021-05-16T19:48:48.6949045Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:48:50.0884353Z ** help 2021-05-16T19:48:50.1545139Z *** installing help indices 2021-05-16T19:48:50.2055782Z *** copying figures 2021-05-16T19:48:50.2058217Z ** building package indices 2021-05-16T19:48:50.4754314Z ** installing vignettes 2021-05-16T19:48:50.4794431Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:48:50.6956512Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:48:50.7159782Z ** testing if installed package can be loaded from final location 2021-05-16T19:48:50.9793891Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:48:50.9795098Z * DONE (covr) 2021-05-16T19:48:50.9858708Z 2021-05-16T19:48:50.9859645Z The downloaded source packages are in 2021-05-16T19:48:50.9861019Z ‘/tmp/RtmpEn4Cob/downloaded_packages’ 2021-05-16T19:48:50.9994866Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-16T19:48:50.9995560Z Rscript -e "tic::before_install()" 2021-05-16T19:48:51.0042482Z shell: /usr/bin/bash -e {0} 2021-05-16T19:48:51.0042915Z env: 2021-05-16T19:48:51.0043403Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:48:51.0043932Z TIC_DEPLOY_KEY: 2021-05-16T19:48:51.0044825Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:48:51.0046707Z GITHUB_PAT: *** 2021-05-16T19:48:51.0047110Z COVERALLS_TOKEN: 2021-05-16T19:48:51.0047613Z continue-on-error: true 2021-05-16T19:48:51.0048273Z VDIFFR_RUN_TESTS: 2021-05-16T19:48:51.0048895Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:48:51.0049357Z TZ: UTC 2021-05-16T19:48:51.0049756Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:48:51.0050344Z NOT_CRAN: true 2021-05-16T19:48:51.0050718Z ##[endgroup] 2021-05-16T19:48:51.2916718Z ✔ Loading tic stage configuration from tic.R 2021-05-16T19:48:51.4180091Z Running before_install: step_install_remote_binaries() 2021-05-16T19:48:51.9418912Z Installing oro.nifti binaries 2021-05-16T19:48:51.9432668Z [1] "neuroconductor/oro.nifti" 2021-05-16T19:48:52.1543880Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T19:48:52.1551042Z Installing oro.dicom binaries 2021-05-16T19:48:52.1559343Z [1] "neuroconductor/oro.dicom" 2021-05-16T19:48:52.2825930Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T19:48:52.2954343Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-16T19:48:52.2955183Z remotes::install_deps(dependencies = TRUE) 2021-05-16T19:48:52.2955846Z remotes::install_cran("rcmdcheck") 2021-05-16T19:48:52.2956464Z remotes::install_cran("markdown") 2021-05-16T19:48:52.2963778Z shell: /usr/local/bin/Rscript {0} 2021-05-16T19:48:52.2964239Z env: 2021-05-16T19:48:52.2964713Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:48:52.2965235Z TIC_DEPLOY_KEY: 2021-05-16T19:48:52.2966127Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:48:52.2967850Z GITHUB_PAT: *** 2021-05-16T19:48:52.2968279Z COVERALLS_TOKEN: 2021-05-16T19:48:52.2968814Z continue-on-error: true 2021-05-16T19:48:52.2969338Z VDIFFR_RUN_TESTS: 2021-05-16T19:48:52.2969857Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:48:52.2970348Z TZ: UTC 2021-05-16T19:48:52.2970879Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:48:52.2971334Z NOT_CRAN: true 2021-05-16T19:48:52.2971723Z ##[endgroup] 2021-05-16T19:49:10.4269413Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-16T19:49:10.4271733Z oro.dicom (NA -> 7f1fd6a4f...) [GitHub] 2021-05-16T19:49:10.4273742Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-16T19:49:10.4275267Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-16T19:49:10.4276796Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-16T19:49:10.4278275Z XML (NA -> 3.99-0.6 ) [CRAN] 2021-05-16T19:49:10.4279796Z minpack.lm (NA -> 1.2-1 ) [CRAN] 2021-05-16T19:49:10.5971775Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-16T19:49:12.1362764Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-16T19:49:12.1365197Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-16T19:49:12.1367024Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-16T19:49:12.1368728Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-16T19:49:12.1370592Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-16T19:49:12.1372306Z rticles (NA -> 0.19 ) [CRAN] 2021-05-16T19:49:12.1374202Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-16T19:49:12.1375964Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-16T19:49:12.2964442Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-16T19:49:13.5870227Z 2021-05-16T19:49:13.8056972Z 2021-05-16T19:49:13.8071687Z checking for file ‘/tmp/RtmppOYokP/remotesd5486d6cdd4c/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-16T19:49:13.8158162Z 2021-05-16T19:49:13.8160974Z ✔ checking for file ‘/tmp/RtmppOYokP/remotesd5486d6cdd4c/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-16T19:49:13.8233403Z 2021-05-16T19:49:13.8264868Z 2021-05-16T19:49:13.8266902Z ─ preparing ‘RNifti’: 2021-05-16T19:49:13.8276019Z 2021-05-16T19:49:13.8277776Z 2021-05-16T19:49:13.8379858Z checking DESCRIPTION meta-information ... 2021-05-16T19:49:13.8409807Z 2021-05-16T19:49:13.8411877Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:49:13.8434852Z ─ cleaning src 2021-05-16T19:49:13.8442380Z 2021-05-16T19:49:13.8464325Z 2021-05-16T19:49:13.8466209Z ─ running ‘cleanup’ 2021-05-16T19:49:13.8940198Z 2021-05-16T19:49:13.8978388Z 2021-05-16T19:49:13.8982600Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:49:13.9333338Z 2021-05-16T19:49:13.9358687Z 2021-05-16T19:49:13.9360896Z ─ checking for empty or unneeded directories 2021-05-16T19:49:13.9390343Z 2021-05-16T19:49:13.9412848Z 2021-05-16T19:49:13.9414849Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-16T19:49:14.2620135Z 2021-05-16T19:49:14.2624353Z 2021-05-16T19:49:14.2626859Z 2021-05-16T19:49:14.2757225Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:49:14.2758279Z (as ‘lib’ is unspecified) 2021-05-16T19:49:14.6201530Z * installing *source* package ‘RNifti’ ... 2021-05-16T19:49:14.6203723Z ** using staged installation 2021-05-16T19:49:14.6374093Z ** libs 2021-05-16T19:49:14.6438599Z 2021-05-16T19:49:14.6442476Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-16T19:49:34.4305094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-16T19:49:34.5256534Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-16T19:49:34.6212660Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-16T19:49:34.6622109Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-16T19:49:34.7856924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-16T19:49:35.2876059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-16T19:49:35.3325324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-16T19:49:35.4685890Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-16T19:49:35.6463499Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-16T19:49:35.7841342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-16T19:49:36.0665917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-16T19:49:36.1954146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-16T19:49:36.7387483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-16T19:49:36.8371743Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-16T19:49:37.1661587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-16T19:49:37.2060666Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-16T19:49:37.2532684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-16T19:49:37.3347434Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-16T19:49:38.5543934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-16T19:49:41.1854643Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:49:41.3892867Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-16T19:49:41.4036060Z ** R 2021-05-16T19:49:41.4124228Z ** inst 2021-05-16T19:49:41.4155790Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:49:42.2960723Z ** help 2021-05-16T19:49:42.3516299Z *** installing help indices 2021-05-16T19:49:42.3881718Z ** building package indices 2021-05-16T19:49:42.6177691Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:49:42.9114013Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:49:42.9378313Z ** testing if installed package can be loaded from final location 2021-05-16T19:49:43.2328643Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:49:43.2339751Z * DONE (RNifti) 2021-05-16T19:49:43.2514064Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-16T19:49:43.2521010Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:49:43.2522080Z (as ‘lib’ is unspecified) 2021-05-16T19:49:58.9296567Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-16T19:49:59.3880935Z Content type 'application/x-tar' length 7843 bytes 2021-05-16T19:49:59.3882786Z ================================================== 2021-05-16T19:49:59.3883857Z downloaded 7843 bytes 2021-05-16T19:49:59.3884743Z 2021-05-16T19:49:59.3935157Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-16T19:49:59.8995990Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-16T19:49:59.9000381Z ================================================== 2021-05-16T19:49:59.9001615Z downloaded 28 KB 2021-05-16T19:49:59.9002534Z 2021-05-16T19:49:59.9040878Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-16T19:50:00.4095359Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-16T19:50:00.4096681Z ================================================== 2021-05-16T19:50:00.4097305Z downloaded 70 KB 2021-05-16T19:50:00.4097729Z 2021-05-16T19:50:00.4137531Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-16T19:50:00.8107858Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-16T19:50:00.8529979Z ================================================== 2021-05-16T19:50:00.8530807Z downloaded 3.1 MB 2021-05-16T19:50:00.8531242Z 2021-05-16T19:50:00.8570747Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-16T19:50:01.8709294Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-16T19:50:02.0348999Z ================================================== 2021-05-16T19:50:02.0350457Z downloaded 1.6 MB 2021-05-16T19:50:02.0351142Z 2021-05-16T19:50:02.0390231Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-16T19:50:02.7412971Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-16T19:50:02.7415168Z ================================================== 2021-05-16T19:50:02.7415733Z downloaded 21 KB 2021-05-16T19:50:02.7416098Z 2021-05-16T19:50:02.7462765Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-16T19:50:03.1190508Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-16T19:50:03.1191509Z ================================================== 2021-05-16T19:50:03.1192143Z downloaded 10 KB 2021-05-16T19:50:03.1193091Z 2021-05-16T19:50:03.3468881Z * installing *source* package ‘base64enc’ ... 2021-05-16T19:50:03.3477404Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:03.3478491Z ** using staged installation 2021-05-16T19:50:03.3588538Z ** libs 2021-05-16T19:50:03.3641186Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T19:50:03.4893746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-16T19:50:03.5759891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-16T19:50:03.6594841Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:50:03.6836097Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-16T19:50:03.6852682Z ** R 2021-05-16T19:50:03.6884705Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:03.9646023Z ** help 2021-05-16T19:50:03.9884805Z *** installing help indices 2021-05-16T19:50:04.0061170Z ** building package indices 2021-05-16T19:50:04.2243533Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:04.4184945Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:50:04.4386370Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:04.6249257Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:04.6260592Z * DONE (base64enc) 2021-05-16T19:50:04.8516576Z * installing *source* package ‘tinytex’ ... 2021-05-16T19:50:04.8528966Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:04.8530828Z ** using staged installation 2021-05-16T19:50:04.8728287Z ** R 2021-05-16T19:50:04.8807774Z ** inst 2021-05-16T19:50:04.8818923Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:05.6405994Z ** help 2021-05-16T19:50:05.6760578Z *** installing help indices 2021-05-16T19:50:05.7057042Z ** building package indices 2021-05-16T19:50:05.9279455Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:06.1277034Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:06.3323288Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:06.3336774Z * DONE (tinytex) 2021-05-16T19:50:06.5659581Z * installing *source* package ‘abind’ ... 2021-05-16T19:50:06.5677446Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:06.5678378Z ** using staged installation 2021-05-16T19:50:06.5794949Z ** R 2021-05-16T19:50:06.5848443Z ** inst 2021-05-16T19:50:06.5855558Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:07.1793412Z ** help 2021-05-16T19:50:07.2066037Z *** installing help indices 2021-05-16T19:50:07.2302197Z ** building package indices 2021-05-16T19:50:07.4430888Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:07.6311886Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:07.8281830Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:07.8290197Z * DONE (abind) 2021-05-16T19:50:08.0543669Z * installing *source* package ‘bitops’ ... 2021-05-16T19:50:08.0552850Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:08.0554643Z ** using staged installation 2021-05-16T19:50:08.0671053Z ** libs 2021-05-16T19:50:08.0722395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-16T19:50:08.2700159Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-16T19:50:08.3309188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:50:08.3818148Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:50:08.3986097Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-16T19:50:08.4002236Z ** R 2021-05-16T19:50:08.4030311Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:08.6328054Z ** help 2021-05-16T19:50:08.6606982Z *** installing help indices 2021-05-16T19:50:08.6795701Z ** building package indices 2021-05-16T19:50:08.8872974Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:09.0769296Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:50:09.0967055Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:09.2858502Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:09.2863854Z * DONE (bitops) 2021-05-16T19:50:09.5998426Z * installing *source* package ‘htmltools’ ... 2021-05-16T19:50:10.4732820Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:10.4734514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:50:10.4735754Z ** using staged installation 2021-05-16T19:50:10.4736447Z ** libs 2021-05-16T19:50:10.4738456Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-16T19:50:10.4739419Z ** R 2021-05-16T19:50:10.4740541Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:10.4742843Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-16T19:50:10.4744925Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:50:11.2965333Z ** help 2021-05-16T19:50:11.3828267Z *** installing help indices 2021-05-16T19:50:11.4414911Z ** building package indices 2021-05-16T19:50:11.6993400Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:11.9209743Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:50:11.9405504Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:12.1991819Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:12.2005592Z * DONE (htmltools) 2021-05-16T19:50:13.0114406Z * installing *source* package ‘rmarkdown’ ... 2021-05-16T19:50:13.0415984Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:13.0416976Z ** using staged installation 2021-05-16T19:50:13.0699676Z ** R 2021-05-16T19:50:13.1100982Z ** inst 2021-05-16T19:50:13.1320393Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:16.3304857Z ** help 2021-05-16T19:50:16.5385309Z *** installing help indices 2021-05-16T19:50:16.6897780Z *** copying figures 2021-05-16T19:50:16.6898833Z ** building package indices 2021-05-16T19:50:16.9993531Z ** installing vignettes 2021-05-16T19:50:17.0087535Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:17.2732824Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:17.6074055Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:17.6087270Z * DONE (rmarkdown) 2021-05-16T19:50:18.1948289Z * installing *source* package ‘rticles’ ... 2021-05-16T19:50:18.2128244Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:18.2129734Z ** using staged installation 2021-05-16T19:50:18.2356952Z ** R 2021-05-16T19:50:18.2423067Z ** inst 2021-05-16T19:50:18.2655593Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:18.7486775Z ** help 2021-05-16T19:50:18.7903245Z *** installing help indices 2021-05-16T19:50:18.8245854Z ** building package indices 2021-05-16T19:50:19.0411463Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:19.3100747Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:19.5662317Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:19.5697388Z * DONE (rticles) 2021-05-16T19:50:19.5820386Z 2021-05-16T19:50:19.5821391Z The downloaded source packages are in 2021-05-16T19:50:19.5822765Z ‘/tmp/RtmppOYokP/downloaded_packages’ 2021-05-16T19:50:19.6590480Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-16T19:50:19.6592220Z Use `force = TRUE` to force installation 2021-05-16T19:50:19.8547643Z 2021-05-16T19:50:19.8564655Z checking for file ‘/tmp/RtmppOYokP/remotesd548596f2661/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-16T19:50:19.8588057Z 2021-05-16T19:50:19.8590040Z ✔ checking for file ‘/tmp/RtmppOYokP/remotesd548596f2661/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-16T19:50:19.8866565Z 2021-05-16T19:50:19.8867038Z 2021-05-16T19:50:19.8867921Z ─ preparing ‘oro.nifti’: 2021-05-16T19:50:19.8868254Z 2021-05-16T19:50:19.8868560Z 2021-05-16T19:50:19.9018382Z checking DESCRIPTION meta-information ... 2021-05-16T19:50:19.9019165Z 2021-05-16T19:50:19.9019980Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:50:20.0466102Z 2021-05-16T19:50:20.0466683Z 2021-05-16T19:50:20.0468052Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:50:20.0468568Z 2021-05-16T19:50:20.0468880Z 2021-05-16T19:50:20.0469612Z ─ checking for empty or unneeded directories 2021-05-16T19:50:20.0470530Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-16T19:50:20.0470955Z 2021-05-16T19:50:20.0471270Z 2021-05-16T19:50:20.0472158Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-16T19:50:20.0593617Z 2021-05-16T19:50:20.0625064Z 2021-05-16T19:50:20.0628110Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-16T19:50:20.5819166Z 2021-05-16T19:50:20.5825657Z 2021-05-16T19:50:20.5830098Z 2021-05-16T19:50:20.6333610Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:50:20.6334357Z (as ‘lib’ is unspecified) 2021-05-16T19:50:21.1810471Z * installing *source* package ‘oro.nifti’ ... 2021-05-16T19:50:21.1812505Z ** using staged installation 2021-05-16T19:50:21.2006998Z ** R 2021-05-16T19:50:21.2475249Z ** demo 2021-05-16T19:50:21.2480818Z ** inst 2021-05-16T19:50:21.2553460Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:28.1693670Z 2021-05-16T19:50:28.1695309Z ** help 2021-05-16T19:50:28.1696616Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-16T19:50:28.5311473Z *** installing help indices 2021-05-16T19:50:28.8112238Z ** building package indices 2021-05-16T19:50:29.2688524Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:29.8992823Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:30.6457472Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:30.6541692Z * DONE (oro.nifti) 2021-05-16T19:50:30.8512752Z Downloading GitHub repo neuroconductor/oro.dicom@7f1fd6a4f7c63754e62fb7246e4ff8e63222bf7c 2021-05-16T19:50:32.2731025Z 2021-05-16T19:50:32.4785940Z 2021-05-16T19:50:32.4793815Z checking for file ‘/tmp/RtmppOYokP/remotesd5484c7b100f/neuroconductor-oro.dicom-7f1fd6a/DESCRIPTION’ ... 2021-05-16T19:50:32.4796190Z 2021-05-16T19:50:32.4799220Z checking for file ‘/tmp/RtmppOYokP/remotesd5484c7b100f/neuroconductor-oro.dicom-7f1fd6a/DESCRIPTION’ ... 2021-05-16T19:50:32.4801342Z 2021-05-16T19:50:32.4805578Z checking for file ‘/tmp/RtmppOYokP/remotesd5484c7b100f/neuroconductor-oro.dicom-7f1fd6a/DESCRIPTION’ ... OK 2021-05-16T19:50:32.4827435Z 2021-05-16T19:50:32.4830929Z ✔ checking for file ‘/tmp/RtmppOYokP/remotesd5484c7b100f/neuroconductor-oro.dicom-7f1fd6a/DESCRIPTION’ 2021-05-16T19:50:32.4989330Z 2021-05-16T19:50:32.4990487Z 2021-05-16T19:50:32.4991585Z ─ preparing ‘oro.dicom’: 2021-05-16T19:50:32.4992038Z 2021-05-16T19:50:32.4992610Z 2021-05-16T19:50:32.5076629Z checking DESCRIPTION meta-information ... 2021-05-16T19:50:32.5098442Z 2021-05-16T19:50:32.5100640Z ✔ checking DESCRIPTION meta-information 2021-05-16T19:50:32.5491343Z 2021-05-16T19:50:32.5528938Z 2021-05-16T19:50:32.5533269Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:50:32.5546745Z 2021-05-16T19:50:32.5584622Z 2021-05-16T19:50:32.5586719Z ─ checking for empty or unneeded directories 2021-05-16T19:50:32.5594348Z 2021-05-16T19:50:32.5614263Z 2021-05-16T19:50:32.5616357Z ─ building ‘oro.dicom_0.5.2.2.tar.gz’ 2021-05-16T19:50:32.8826854Z 2021-05-16T19:50:32.8831385Z 2021-05-16T19:50:32.8834425Z 2021-05-16T19:50:32.8949030Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:50:32.8950168Z (as ‘lib’ is unspecified) 2021-05-16T19:50:33.2781928Z * installing *source* package ‘oro.dicom’ ... 2021-05-16T19:50:33.2784223Z ** using staged installation 2021-05-16T19:50:33.2931518Z ** R 2021-05-16T19:50:33.3022540Z ** data 2021-05-16T19:50:33.3028770Z *** moving datasets to lazyload DB 2021-05-16T19:50:33.3538958Z ** inst 2021-05-16T19:50:33.3581099Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:50:34.1778668Z ** help 2021-05-16T19:50:34.2330068Z *** installing help indices 2021-05-16T19:50:34.2769600Z ** building package indices 2021-05-16T19:50:34.5273604Z ** installing vignettes 2021-05-16T19:50:34.5301297Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:50:34.7144256Z ** testing if installed package can be loaded from final location 2021-05-16T19:50:34.9100288Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:50:34.9119737Z * DONE (oro.dicom) 2021-05-16T19:50:34.9223170Z Installing 5 packages: RNifti, abind, bitops, XML, minpack.lm 2021-05-16T19:50:34.9231058Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T19:50:34.9232200Z (as ‘lib’ is unspecified) 2021-05-16T19:50:50.4753699Z trying URL 'https://cloud.r-project.org/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-16T19:50:50.6095279Z Content type 'application/x-gzip' length 1076925 bytes (1.0 MB) 2021-05-16T19:50:50.6398818Z ================================================== 2021-05-16T19:50:50.6399397Z downloaded 1.0 MB 2021-05-16T19:50:50.6399680Z 2021-05-16T19:50:50.6427100Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-16T19:50:51.0351976Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-16T19:50:51.0355674Z ================================================== 2021-05-16T19:50:51.0356190Z downloaded 21 KB 2021-05-16T19:50:51.0356518Z 2021-05-16T19:50:51.0395678Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-16T19:50:51.3334098Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-16T19:50:51.3334914Z ================================================== 2021-05-16T19:50:51.3335380Z downloaded 10 KB 2021-05-16T19:50:51.3335691Z 2021-05-16T19:50:51.3375245Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/XML_3.99-0.6.tar.gz' 2021-05-16T19:50:51.8439834Z Content type 'binary/octet-stream' length 971636 bytes (948 KB) 2021-05-16T19:50:51.8751091Z ================================================== 2021-05-16T19:50:51.8752323Z downloaded 948 KB 2021-05-16T19:50:51.8755428Z 2021-05-16T19:50:51.8790677Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/minpack.lm_1.2-1.tar.gz' 2021-05-16T19:50:52.3856621Z Content type 'application/x-tar' length 43103 bytes (42 KB) 2021-05-16T19:50:52.3857816Z ================================================== 2021-05-16T19:50:52.3858396Z downloaded 42 KB 2021-05-16T19:50:52.3858897Z 2021-05-16T19:50:52.7435418Z * installing *source* package ‘RNifti’ ... 2021-05-16T19:50:52.7519663Z ** package ‘RNifti’ successfully unpacked and MD5 sums checked 2021-05-16T19:50:52.7559739Z ** using staged installation 2021-05-16T19:50:52.7729488Z ** libs 2021-05-16T19:50:52.7782859Z 2021-05-16T19:50:52.7785319Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-16T19:51:12.0606989Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-16T19:51:12.1590255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-16T19:51:12.2527147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-16T19:51:12.2985718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-16T19:51:12.9896415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-16T19:51:12.9907563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-16T19:51:12.9910656Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-16T19:51:13.1463337Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-16T19:51:13.3319786Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-16T19:51:13.4764311Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-16T19:51:13.7444166Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-16T19:51:13.8730716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-16T19:51:14.4405899Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-16T19:51:14.5521084Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-16T19:51:14.8958996Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-16T19:51:14.9349869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-16T19:51:14.9875397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-16T19:51:15.0758190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-16T19:51:16.3373837Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-16T19:51:19.1210824Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:51:19.3261213Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-16T19:51:19.3390357Z ** R 2021-05-16T19:51:19.3469830Z ** inst 2021-05-16T19:51:19.3501412Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:51:20.1182649Z ** help 2021-05-16T19:51:20.1739701Z *** installing help indices 2021-05-16T19:51:20.2090247Z ** building package indices 2021-05-16T19:51:20.4569012Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:51:20.7530328Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:51:20.7807515Z ** testing if installed package can be loaded from final location 2021-05-16T19:51:21.0713873Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:51:21.0715223Z * DONE (RNifti) 2021-05-16T19:51:21.3175813Z * installing *source* package ‘abind’ ... 2021-05-16T19:51:21.3188571Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-16T19:51:21.3235962Z ** using staged installation 2021-05-16T19:51:21.3371820Z ** R 2021-05-16T19:51:21.3425749Z ** inst 2021-05-16T19:51:21.3435704Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:51:21.9435758Z ** help 2021-05-16T19:51:21.9724894Z *** installing help indices 2021-05-16T19:51:21.9959855Z ** building package indices 2021-05-16T19:51:22.2128668Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:51:22.4092436Z ** testing if installed package can be loaded from final location 2021-05-16T19:51:22.6169598Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:51:22.6179479Z * DONE (abind) 2021-05-16T19:51:22.8405341Z * installing *source* package ‘bitops’ ... 2021-05-16T19:51:22.8420291Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-16T19:51:22.8467324Z ** using staged installation 2021-05-16T19:51:22.8579741Z ** libs 2021-05-16T19:51:22.8633901Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-16T19:51:23.0641091Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-16T19:51:23.1288398Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T19:51:23.1799228Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:51:23.1994237Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-16T19:51:23.1995591Z ** R 2021-05-16T19:51:23.2018831Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:51:23.4413334Z ** help 2021-05-16T19:51:23.4683006Z *** installing help indices 2021-05-16T19:51:23.4877124Z ** building package indices 2021-05-16T19:51:23.6962298Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:51:23.8873850Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:51:23.9064381Z ** testing if installed package can be loaded from final location 2021-05-16T19:51:24.0975802Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:51:24.0980879Z * DONE (bitops) 2021-05-16T19:51:24.6382197Z * installing *source* package ‘XML’ ... 2021-05-16T19:51:24.6525213Z ** package ‘XML’ successfully unpacked and MD5 sums checked 2021-05-16T19:51:24.6527165Z ** using staged installation 2021-05-16T19:51:24.7844769Z checking for gcc... gcc 2021-05-16T19:51:24.8517532Z checking whether the C compiler works... yes 2021-05-16T19:51:24.8520645Z checking for C compiler default output file name... a.out 2021-05-16T19:51:24.8928225Z checking for suffix of executables... 2021-05-16T19:51:24.9415844Z checking whether we are cross compiling... no 2021-05-16T19:51:24.9676622Z checking for suffix of object files... o 2021-05-16T19:51:24.9911033Z checking whether we are using the GNU C compiler... yes 2021-05-16T19:51:25.0215736Z checking whether gcc accepts -g... yes 2021-05-16T19:51:25.0635260Z checking for gcc option to accept ISO C89... none needed 2021-05-16T19:51:25.0941194Z checking how to run the C preprocessor... gcc -E 2021-05-16T19:51:25.1187305Z checking for sed... /usr/bin/sed 2021-05-16T19:51:25.1193484Z checking for pkg-config... /usr/bin/pkg-config 2021-05-16T19:51:25.1218810Z checking for xml2-config... /usr/bin/xml2-config 2021-05-16T19:51:25.1219916Z USE_XML2 = yes 2021-05-16T19:51:25.1238969Z SED_EXTENDED_ARG: -E 2021-05-16T19:51:25.1300280Z Minor 9, Patch 10 for 2.9.10 2021-05-16T19:51:25.1333417Z Located parser file -I/usr/include/libxml2/parser.h 2021-05-16T19:51:25.1334564Z Checking for 1.8: -I/usr/include/libxml2 2021-05-16T19:51:25.1799584Z Using libxml2.* 2021-05-16T19:51:25.2262266Z checking for gzopen in -lz... yes 2021-05-16T19:51:25.3157623Z checking for xmlParseFile in -lxml2... yes 2021-05-16T19:51:25.5849977Z checking for xmlHashSize in -lxml2... yes 2021-05-16T19:51:25.5852409Z Using built-in xmlHashSize 2021-05-16T19:51:25.5854265Z Checking DTD parsing (presence of externalSubset)... 2021-05-16T19:51:25.8066869Z checking for xmlHashSize in -lxml2... yes 2021-05-16T19:51:25.8068165Z Found xmlHashSize 2021-05-16T19:51:25.9638003Z checking for xmlOutputBufferCreateBuffer in -lxml2... yes 2021-05-16T19:51:25.9639740Z have xmlOutputBufferCreateBuffer() 2021-05-16T19:51:26.0566485Z checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes 2021-05-16T19:51:26.0805532Z checking libxml/xmlversion.h usability... yes 2021-05-16T19:51:26.0896177Z checking libxml/xmlversion.h presence... yes 2021-05-16T19:51:26.0897300Z checking for libxml/xmlversion.h... yes 2021-05-16T19:51:26.2099069Z Expat: FALSE 2021-05-16T19:51:26.2316961Z Checking for return type of xmlHashScan element routine. 2021-05-16T19:51:26.2878929Z No return value for xmlHashScan 2021-05-16T19:51:26.3470618Z xmlNs has a context field 2021-05-16T19:51:26.3485508Z Checking for cetype_t enumeration 2021-05-16T19:51:26.3923299Z Using recent version of R with cetype_t enumeration type for encoding 2021-05-16T19:51:26.3951728Z checking for xmlsec1-config... no 2021-05-16T19:51:26.3952724Z nodegc default 2021-05-16T19:51:26.3953531Z xml-debug default 2021-05-16T19:51:26.4555053Z Version has XML_WITH_ZLIB 2021-05-16T19:51:26.5318888Z Version has xmlHasFeature() 2021-05-16T19:51:26.5331369Z 2021-05-16T19:51:26.5332216Z **************************************** 2021-05-16T19:51:26.5332969Z Configuration information: 2021-05-16T19:51:26.5333490Z 2021-05-16T19:51:26.5334031Z Libxml settings 2021-05-16T19:51:26.5334533Z 2021-05-16T19:51:26.5336372Z libxml include directory: -I/usr/include/libxml2 2021-05-16T19:51:26.5339867Z libxml library directory: -lxml2 -lz -lxml2 2021-05-16T19:51:26.5357505Z libxml 2: -DLIBXML2=1 2021-05-16T19:51:26.5357819Z 2021-05-16T19:51:26.5360737Z Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 2021-05-16T19:51:26.5362688Z Link flags: -lxml2 -lz -lxml2 2021-05-16T19:51:26.5363066Z 2021-05-16T19:51:26.5363493Z **************************************** 2021-05-16T19:51:26.5605219Z configure: creating ./config.status 2021-05-16T19:51:26.6524275Z config.status: creating src/Makevars 2021-05-16T19:51:26.6779231Z config.status: creating R/supports.R 2021-05-16T19:51:26.6974610Z config.status: creating inst/scripts/RSXML.csh 2021-05-16T19:51:26.7182178Z config.status: creating inst/scripts/RSXML.bsh 2021-05-16T19:51:26.7770604Z ** libs 2021-05-16T19:51:26.7832069Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c DocParse.c -o DocParse.o 2021-05-16T19:51:27.2667310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c EventParse.c -o EventParse.o 2021-05-16T19:51:27.4694717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c ExpatParse.c -o ExpatParse.o 2021-05-16T19:51:27.4929650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c HTMLParse.c -o HTMLParse.o 2021-05-16T19:51:27.6023164Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c NodeGC.c -o NodeGC.o 2021-05-16T19:51:27.7485748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RSDTD.c -o RSDTD.o 2021-05-16T19:51:27.9570008Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RUtils.c -o RUtils.o 2021-05-16T19:51:28.0897190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c Rcatalog.c -o Rcatalog.o 2021-05-16T19:51:28.1945379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c Utils.c -o Utils.o 2021-05-16T19:51:28.3474286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLEventParse.c -o XMLEventParse.o 2021-05-16T19:51:28.6357471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLHashTree.c -o XMLHashTree.o 2021-05-16T19:51:28.7698493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLTree.c -o XMLTree.o 2021-05-16T19:51:29.2698275Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c fixNS.c -o fixNS.o 2021-05-16T19:51:29.3677586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c libxmlFeatures.c -o libxmlFeatures.o 2021-05-16T19:51:29.4554986Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c schema.c -o schema.o 2021-05-16T19:51:29.5885606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c xmlsecurity.c -o xmlsecurity.o 2021-05-16T19:51:29.6090154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c xpath.c -o xpath.o 2021-05-16T19:51:29.8859154Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:51:29.9355709Z installing to /home/runner/work/_temp/Library/00LOCK-XML/00new/XML/libs 2021-05-16T19:51:29.9357450Z ** R 2021-05-16T19:51:29.9797217Z ** inst 2021-05-16T19:51:29.9908354Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:51:37.1349631Z Creating a generic function for ‘source’ from package ‘base’ in package ‘XML’ 2021-05-16T19:51:37.1351308Z ** help 2021-05-16T19:51:37.1352403Z in method for ‘xmlAttrsToDataFrame’ with signature ‘"AsIs"’: no definition for class “AsIs” 2021-05-16T19:51:37.1354409Z in method for ‘readKeyValueDB’ with signature ‘"AsIs"’: no definition for class “AsIs” 2021-05-16T19:51:37.1355895Z in method for ‘readSolrDoc’ with signature ‘"AsIs"’: no definition for class “AsIs” 2021-05-16T19:51:37.4660512Z *** installing help indices 2021-05-16T19:51:37.7068469Z ** building package indices 2021-05-16T19:51:38.1092570Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:51:38.4385277Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:51:38.4604790Z ** testing if installed package can be loaded from final location 2021-05-16T19:51:38.9397341Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:51:38.9497513Z * DONE (XML) 2021-05-16T19:51:39.2062641Z * installing *source* package ‘minpack.lm’ ... 2021-05-16T19:51:39.2080463Z ** package ‘minpack.lm’ successfully unpacked and MD5 sums checked 2021-05-16T19:51:39.2134730Z ** using staged installation 2021-05-16T19:51:39.2228337Z ** libs 2021-05-16T19:51:39.2291873Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c chkder.f -o chkder.o 2021-05-16T19:51:41.1268082Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dogleg.f -o dogleg.o 2021-05-16T19:51:41.2182869Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dpmpar.f -o dpmpar.o 2021-05-16T19:51:41.2437440Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c enorm.f -o enorm.o 2021-05-16T19:51:41.2832289Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fcn_lmder.c -o fcn_lmder.o 2021-05-16T19:51:41.3694625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fcn_lmdif.c -o fcn_lmdif.o 2021-05-16T19:51:41.4454866Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fcn_message.c -o fcn_message.o 2021-05-16T19:51:41.4981100Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c fdjac2.f -o fdjac2.o 2021-05-16T19:51:41.5389222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c get_element.c -o get_element.o 2021-05-16T19:51:41.5910819Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmder.f -o lmder.o 2021-05-16T19:51:41.7786302Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmdif.f -o lmdif.o 2021-05-16T19:51:41.9672299Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmpar.f -o lmpar.o 2021-05-16T19:51:42.0914121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nls_lm.c -o nls_lm.o 2021-05-16T19:51:42.2748351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c prod.c -o prod.o 2021-05-16T19:51:42.3553979Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qform.f -o qform.o 2021-05-16T19:51:42.4253386Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qrfac.f -o qrfac.o 2021-05-16T19:51:42.5231838Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qrsolv.f -o qrsolv.o 2021-05-16T19:51:42.6084539Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c r1mpyq.f -o r1mpyq.o 2021-05-16T19:51:42.6611560Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c r1updt.f -o r1updt.o 2021-05-16T19:51:42.7523290Z gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rwupdt.f -o rwupdt.o 2021-05-16T19:51:42.7993182Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-16T19:51:42.8308827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c vector.c -o vector.o 2021-05-16T19:51:42.8798738Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o minpack.lm.so chkder.o dogleg.o dpmpar.o enorm.o fcn_lmder.o fcn_lmdif.o fcn_message.o fdjac2.o get_element.o lmder.o lmdif.o lmpar.o nls_lm.o prod.o qform.o qrfac.o qrsolv.o r1mpyq.o r1updt.o rwupdt.o transpose.o vector.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/devel/lib/R/lib -lR 2021-05-16T19:51:42.9275766Z installing to /home/runner/work/_temp/Library/00LOCK-minpack.lm/00new/minpack.lm/libs 2021-05-16T19:51:42.9284942Z ** R 2021-05-16T19:51:42.9331285Z ** byte-compile and prepare package for lazy loading 2021-05-16T19:51:43.4429282Z ** help 2021-05-16T19:51:43.4775570Z *** installing help indices 2021-05-16T19:51:43.5049110Z ** building package indices 2021-05-16T19:51:43.7293280Z ** testing if installed package can be loaded from temporary location 2021-05-16T19:51:43.9213394Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T19:51:43.9407137Z ** testing if installed package can be loaded from final location 2021-05-16T19:51:44.1349824Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T19:51:44.1357256Z * DONE (minpack.lm) 2021-05-16T19:51:44.1450823Z 2021-05-16T19:51:44.1452165Z The downloaded source packages are in 2021-05-16T19:51:44.1453527Z ‘/tmp/RtmppOYokP/downloaded_packages’ 2021-05-16T19:51:44.2138647Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-16T19:51:44.2139749Z Use `force = TRUE` to force installation 2021-05-16T19:51:44.2898811Z Skipping install of 'oro.dicom' from a github remote, the SHA1 (7f1fd6a4) has not changed since last install. 2021-05-16T19:51:44.2900631Z Use `force = TRUE` to force installation 2021-05-16T19:51:59.0245086Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-16T19:51:59.0246889Z Use `force = TRUE` to force installation 2021-05-16T19:51:59.0257950Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-16T19:51:59.0259559Z Use `force = TRUE` to force installation 2021-05-16T19:51:59.0383141Z ##[group]Run options(width = 100) 2021-05-16T19:51:59.0383992Z options(width = 100) 2021-05-16T19:51:59.0384602Z pkgs <- installed.packages()[, "Package"] 2021-05-16T19:51:59.0385374Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-16T19:51:59.0393630Z shell: /usr/local/bin/Rscript {0} 2021-05-16T19:51:59.0394097Z env: 2021-05-16T19:51:59.0394576Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:51:59.0395097Z TIC_DEPLOY_KEY: 2021-05-16T19:51:59.0396007Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:51:59.0397893Z GITHUB_PAT: *** 2021-05-16T19:51:59.0398353Z COVERALLS_TOKEN: 2021-05-16T19:51:59.0398885Z continue-on-error: true 2021-05-16T19:51:59.0399410Z VDIFFR_RUN_TESTS: 2021-05-16T19:51:59.0399935Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:51:59.0400428Z TZ: UTC 2021-05-16T19:51:59.0400846Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:51:59.0401349Z NOT_CRAN: true 2021-05-16T19:51:59.0401753Z ##[endgroup] 2021-05-16T19:51:59.5497932Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-16T19:51:59.5498643Z setting value 2021-05-16T19:51:59.5499615Z version R Under development (unstable) (2021-05-14 r80296) 2021-05-16T19:51:59.5500352Z os Ubuntu 20.04.2 LTS 2021-05-16T19:51:59.5501259Z system x86_64, linux-gnu 2021-05-16T19:51:59.5501838Z ui X11 2021-05-16T19:51:59.5502375Z language (EN) 2021-05-16T19:51:59.5503158Z collate C.UTF-8 2021-05-16T19:51:59.5503890Z ctype C.UTF-8 2021-05-16T19:51:59.5504448Z tz UTC 2021-05-16T19:51:59.5505157Z date 2021-05-16 2021-05-16T19:51:59.5505435Z 2021-05-16T19:51:59.5506305Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-16T19:51:59.5507045Z package * version date lib source 2021-05-16T19:51:59.5507939Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5508884Z aghast 0.2.1 2021-05-16 [1] Github (muschellij2/aghast@0c3b853) 2021-05-16T19:51:59.5510034Z askpass 1.1 2019-01-13 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5510937Z base * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5512119Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5513384Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5514305Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5515183Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5516070Z brio 1.1.2 2021-04-23 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5516952Z cachem 1.0.5 2021-05-15 [1] CRAN (R 4.2.0) 2021-05-16T19:51:59.5517855Z callr 3.7.0 2021-04-20 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5518755Z class 7.3-19 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5519620Z cli 2.5.0 2021-04-26 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5520510Z clipr 0.7.1 2020-10-08 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5521395Z cluster 2.1.2 2021-04-17 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5522500Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5523475Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5524397Z compiler 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5525302Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5526218Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5527121Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5528046Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5528977Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5529876Z datasets * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5530787Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5531784Z desc 1.2.0.9000 2021-05-16 [1] Github (muschellij2/desc@7be86f2) 2021-05-16T19:51:59.5532769Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5533694Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5534597Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5535485Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5536407Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5537334Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5538244Z fansi 0.4.2 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5539136Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5540057Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5540947Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5541831Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5542742Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5543608Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5544619Z ghtravis 0.15.1 2021-05-16 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-16T19:51:59.5545739Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5546640Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5547554Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5548440Z graphics * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5549380Z grDevices * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5550284Z grid 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5551162Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5552079Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5553120Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5554005Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5554895Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5555949Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5556896Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5557784Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5558712Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5559688Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5560557Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5561413Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5562242Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5563115Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5563950Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5564804Z methods * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5565830Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5566696Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5567622Z minpack.lm 1.2-1 2016-11-20 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5568537Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5569427Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5570315Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5571381Z oro.dicom 0.5.2.2 2021-05-16 [1] Github (neuroconductor/oro.dicom@7f1fd6a) 2021-05-16T19:51:59.5572571Z oro.nifti 0.10.3 2021-05-16 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-16T19:51:59.5573622Z parallel 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5574542Z pillar 1.6.1 2021-05-16 [1] CRAN (R 4.2.0) 2021-05-16T19:51:59.5575431Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5576370Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5577303Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5578201Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5579141Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5580170Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5581071Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5581952Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5582836Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5583735Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5584649Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5585570Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5586470Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5587395Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5588297Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5589166Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5590146Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5591062Z RNifti 1.3.1 2021-05-13 [1] CRAN (R 4.2.0) 2021-05-16T19:51:59.5591970Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5593001Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5593907Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5594857Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5595772Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5596704Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5597639Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5598578Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5599496Z splines 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5601254Z stats * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5602379Z stats4 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5603353Z stringi 1.6.1 2021-05-10 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5604408Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5605330Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-16T19:51:59.5606219Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5607182Z sysreqs 1.0.0.9000 2021-05-16 [1] Github (r-hub/sysreqs@f068afa) 2021-05-16T19:51:59.5608129Z tcltk 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5609038Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5609940Z tibble 3.1.2 2021-05-16 [1] CRAN (R 4.2.0) 2021-05-16T19:51:59.5610892Z tic 0.10.0 2021-05-16 [1] Github (ropensci/tic@3b4dfb8) 2021-05-16T19:51:59.5611847Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5612758Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5613696Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5614687Z tools 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5615588Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5616490Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5617361Z utils * 4.2.0 2021-05-15 [2] local 2021-05-16T19:51:59.5618246Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5619120Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5620021Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5620928Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5621793Z xfun 0.23 2021-05-15 [1] CRAN (R 4.2.0) 2021-05-16T19:51:59.5622681Z XML 3.99-0.6 2021-03-16 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5623554Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5624439Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5625394Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5626292Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-16T19:51:59.5626638Z 2021-05-16T19:51:59.5627147Z [1] /home/runner/work/_temp/Library 2021-05-16T19:51:59.5627755Z [2] /opt/R/devel/lib/R/library 2021-05-16T19:51:59.5661059Z ##[group]Run Rscript -e 'tic::script()' 2021-05-16T19:51:59.5661714Z Rscript -e 'tic::script()' 2021-05-16T19:51:59.5662196Z ls -l check 2021-05-16T19:51:59.5709457Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-16T19:51:59.5710024Z env: 2021-05-16T19:51:59.5710524Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:51:59.5711028Z TIC_DEPLOY_KEY: 2021-05-16T19:51:59.5711931Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:51:59.5713982Z GITHUB_PAT: *** 2021-05-16T19:51:59.5714437Z COVERALLS_TOKEN: 2021-05-16T19:51:59.5714959Z continue-on-error: true 2021-05-16T19:51:59.5715576Z VDIFFR_RUN_TESTS: 2021-05-16T19:51:59.5716092Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:51:59.5716560Z TZ: UTC 2021-05-16T19:51:59.5716966Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:51:59.5717394Z NOT_CRAN: true 2021-05-16T19:51:59.5717789Z ##[endgroup] 2021-05-16T19:52:00.5133965Z ✔ Loading tic stage configuration from tic.R 2021-05-16T19:52:00.5140414Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-16T19:52:00.5145294Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-16T19:52:00.5146192Z timeout = Inf, check_dir = "check") 2021-05-16T19:52:00.5147407Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-16T19:52:00.5148329Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-16T19:52:00.5149174Z * preparing ‘dcemriS4’: 2021-05-16T19:52:00.5150119Z * checking DESCRIPTION meta-information ... OK 2021-05-16T19:52:00.5150819Z * cleaning src 2021-05-16T19:52:00.5151487Z * installing the package to build vignettes 2021-05-16T19:52:21.6949627Z * creating vignettes ... OK 2021-05-16T19:52:21.7179694Z * cleaning src 2021-05-16T19:52:21.7734549Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T19:52:21.7847573Z * checking for empty or unneeded directories 2021-05-16T19:52:21.7895018Z * building ‘dcemriS4_0.57.2.tar.gz’ 2021-05-16T19:52:22.2853754Z 2021-05-16T19:52:22.5039312Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-16T19:52:22.7617761Z * using log directory ‘/home/runner/work/dcemriS4/dcemriS4/check/dcemriS4.Rcheck’ 2021-05-16T19:52:22.7619686Z * using R Under development (unstable) (2021-05-14 r80296) 2021-05-16T19:52:22.7620825Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-16T19:52:22.7621779Z * using session charset: UTF-8 2021-05-16T19:52:23.0166338Z * using option ‘--as-cran’ 2021-05-16T19:52:23.0201438Z * checking for file ‘dcemriS4/DESCRIPTION’ ... OK 2021-05-16T19:52:23.0206000Z * this is package ‘dcemriS4’ version ‘0.57.2’ 2021-05-16T19:52:23.0221985Z * checking package namespace information ... OK 2021-05-16T19:52:38.7875816Z * checking package dependencies ... OK 2021-05-16T19:52:38.7891791Z * checking if this is a source package ... OK 2021-05-16T19:52:38.7893673Z * checking if there is a namespace ... OK 2021-05-16T19:52:39.5152019Z * checking for executable files ... OK 2021-05-16T19:52:39.5163730Z * checking for hidden files and directories ... OK 2021-05-16T19:52:39.5165417Z * checking for portable file names ... OK 2021-05-16T19:52:39.5166810Z * checking for sufficient/correct file permissions ... OK 2021-05-16T19:52:39.5168215Z * checking serialization versions ... OK 2021-05-16T19:52:47.2823392Z * checking whether package ‘dcemriS4’ can be installed ... OK 2021-05-16T19:52:47.2992024Z * checking installed package size ... OK 2021-05-16T19:52:47.3714631Z * checking package directory ... OK 2021-05-16T19:52:47.3716059Z * checking for future file timestamps ... OK 2021-05-16T19:52:47.3723467Z * checking ‘build’ directory ... OK 2021-05-16T19:52:47.5707087Z * checking DESCRIPTION meta-information ... OK 2021-05-16T19:52:47.5708593Z * checking top-level files ... OK 2021-05-16T19:52:47.5709681Z * checking for left-over files ... OK 2021-05-16T19:52:47.6760322Z * checking index information ... OK 2021-05-16T19:52:47.9149071Z * checking package subdirectories ... OK 2021-05-16T19:52:47.9743615Z * checking R files for non-ASCII characters ... OK 2021-05-16T19:52:48.0454698Z * checking R files for syntax errors ... OK 2021-05-16T19:52:48.7404460Z * checking whether the package can be loaded ... OK 2021-05-16T19:52:49.4131343Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-16T19:52:50.0434266Z * checking whether the package can be unloaded cleanly ... OK 2021-05-16T19:52:50.6872865Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-16T19:52:51.3173648Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-16T19:52:51.9774280Z * checking loading without being on the library search path ... OK 2021-05-16T19:52:52.8099739Z * checking dependencies in R code ... OK 2021-05-16T19:52:54.0822243Z * checking S3 generic/method consistency ... OK 2021-05-16T19:52:54.7561083Z * checking replacement functions ... OK 2021-05-16T19:52:55.7049743Z * checking foreign function calls ... OK 2021-05-16T19:53:07.5454192Z * checking R code for possible problems ... OK 2021-05-16T19:53:07.9422393Z * checking Rd files ... OK 2021-05-16T19:53:07.9950493Z * checking Rd metadata ... OK 2021-05-16T19:53:08.1208381Z * checking Rd line widths ... OK 2021-05-16T19:53:08.2669785Z * checking Rd cross-references ... OK 2021-05-16T19:53:08.9263840Z * checking for missing documentation entries ... OK 2021-05-16T19:53:11.0187167Z * checking for code/documentation mismatches ... OK 2021-05-16T19:53:12.5646072Z * checking Rd \usage sections ... OK 2021-05-16T19:53:12.7189605Z * checking Rd contents ... OK 2021-05-16T19:53:12.8867004Z * checking for unstated dependencies in examples ... OK 2021-05-16T19:53:12.8975637Z * checking contents of ‘data’ directory ... OK 2021-05-16T19:53:13.1295165Z * checking data for non-ASCII characters ... OK 2021-05-16T19:53:13.1321500Z * checking LazyData ... OK 2021-05-16T19:53:13.3318783Z * checking data for ASCII and uncompressed saves ... OK 2021-05-16T19:53:13.3350769Z * checking line endings in C/C++/Fortran sources/headers ... OK 2021-05-16T19:53:13.3366109Z * checking line endings in Makefiles ... OK 2021-05-16T19:53:13.4073989Z * checking compilation flags in Makevars ... OK 2021-05-16T19:53:13.4075290Z * checking for GNU extensions in Makefiles ... OK 2021-05-16T19:53:13.4076728Z * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2021-05-16T19:53:13.4077740Z * checking use of PKG_*FLAGS in Makefiles ... OK 2021-05-16T19:53:13.4081280Z * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2021-05-16T19:53:13.4124744Z * checking pragmas in C/C++ headers and code ... OK 2021-05-16T19:53:13.4132367Z * checking compilation flags used ... OK 2021-05-16T19:53:13.4967872Z * checking compiled code ... OK 2021-05-16T19:53:15.9556843Z * checking sizes of PDF files under ‘inst/doc’ ... WARNING 2021-05-16T19:53:15.9564859Z ##[warning] ‘gs+qpdf’ made some significant size reductions: 2021-05-16T19:53:15.9600285Z compacted ‘dcemriS4.pdf’ from 1188Kb to 775Kb 2021-05-16T19:53:15.9602164Z consider running tools::compactPDF(gs_quality = "ebook") on these files 2021-05-16T19:53:16.0271974Z * checking installed files from ‘inst/doc’ ... OK 2021-05-16T19:53:16.0441961Z * checking files in ‘vignettes’ ... OK 2021-05-16T19:53:25.3606942Z * checking examples ... OK 2021-05-16T19:53:25.4306763Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-16T19:53:25.6092082Z * checking tests ... 2021-05-16T19:53:26.5455283Z Running ‘testthat.R’ 2021-05-16T19:53:26.5502109Z OK 2021-05-16T19:53:26.6653712Z * checking for unstated dependencies in vignettes ... OK 2021-05-16T19:53:26.6909221Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-16T19:53:40.5674633Z * checking re-building of vignette outputs ... OK 2021-05-16T19:53:43.1434571Z * checking PDF version of manual ... OK 2021-05-16T19:53:43.1436431Z * checking for non-standard things in the check directory ... OK 2021-05-16T19:53:43.1437676Z * checking for detritus in the temp directory ... OK 2021-05-16T19:53:43.1438584Z * DONE 2021-05-16T19:53:43.1439088Z 2021-05-16T19:53:43.1443611Z Status: 1 WARNING 2021-05-16T19:53:43.1450366Z See 2021-05-16T19:53:43.1451958Z ‘/home/runner/work/dcemriS4/dcemriS4/check/dcemriS4.Rcheck/00check.log’ 2021-05-16T19:53:43.1452956Z for details. 2021-05-16T19:53:43.1453446Z 2021-05-16T19:53:43.1453876Z 2021-05-16T19:53:43.2333736Z ── R CMD check results ──────────────────────────────────── dcemriS4 0.57.2 ──── 2021-05-16T19:53:43.2360855Z Duration: 1m 20.9s 2021-05-16T19:53:43.2361431Z 2021-05-16T19:53:43.2400051Z ❯ checking sizes of PDF files under ‘inst/doc’ ... WARNING 2021-05-16T19:53:43.2402292Z ##[warning] ‘gs+qpdf’ made some significant size reductions: 2021-05-16T19:53:43.2404851Z compacted ‘dcemriS4.pdf’ from 1188Kb to 775Kb 2021-05-16T19:53:43.2406162Z consider running tools::compactPDF(gs_quality = "ebook") on these files 2021-05-16T19:53:43.2406910Z 2021-05-16T19:53:43.2410669Z 0 errors ✔ | 1 warning ✖ | 0 notes ✔ 2021-05-16T19:53:43.2522058Z total 8404 2021-05-16T19:53:43.2523874Z drwxr-xr-x 6 runner docker 4096 May 16 19:53 dcemriS4.Rcheck 2021-05-16T19:53:43.2526253Z -rw-r--r-- 1 runner docker 4458572 May 16 19:52 dcemriS4_0.57.2.tar.gz 2021-05-16T19:53:43.2527648Z -rw-r--r-- 1 runner docker 4138901 May 16 19:52 dcemriS4_0.57.2_R_x86_64-pc-linux-gnu.tar.gz 2021-05-16T19:53:43.2565685Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-16T19:53:43.2566528Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-16T19:53:43.2613705Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-16T19:53:43.2614281Z env: 2021-05-16T19:53:43.2614761Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:53:43.2615283Z TIC_DEPLOY_KEY: 2021-05-16T19:53:43.2616172Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:53:43.2618062Z GITHUB_PAT: *** 2021-05-16T19:53:43.2618497Z COVERALLS_TOKEN: 2021-05-16T19:53:43.2619038Z continue-on-error: true 2021-05-16T19:53:43.2619571Z VDIFFR_RUN_TESTS: 2021-05-16T19:53:43.2620421Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:53:43.2620950Z TZ: UTC 2021-05-16T19:53:43.2621364Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:53:43.2622783Z NOT_CRAN: true 2021-05-16T19:53:43.2623194Z ##[endgroup] 2021-05-16T19:53:43.2732204Z 2021-05-16T19:53:43.2733934Z R Under development (unstable) (2021-05-14 r80296) -- "Unsuffered Consequences" 2021-05-16T19:53:43.2735205Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-16T19:53:43.2736447Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-16T19:53:43.2737065Z 2021-05-16T19:53:43.2737863Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-16T19:53:43.2739771Z You are welcome to redistribute it under certain conditions. 2021-05-16T19:53:43.2741843Z Type 'license()' or 'licence()' for distribution details. 2021-05-16T19:53:43.2742316Z 2021-05-16T19:53:43.2742973Z R is a collaborative project with many contributors. 2021-05-16T19:53:43.2743991Z Type 'contributors()' for more information and 2021-05-16T19:53:43.2745026Z 'citation()' on how to cite R or R packages in publications. 2021-05-16T19:53:43.2745487Z 2021-05-16T19:53:43.2746293Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-16T19:53:43.2747294Z 'help.start()' for an HTML browser interface to help. 2021-05-16T19:53:43.2748059Z Type 'q()' to quit R. 2021-05-16T19:53:43.2748357Z 2021-05-16T19:53:43.2748781Z > library(testthat) 2021-05-16T19:53:43.2749294Z > library(dcemriS4) 2021-05-16T19:53:43.2749952Z Loading required package: minpack.lm 2021-05-16T19:53:43.2750671Z Loading required package: oro.nifti 2021-05-16T19:53:43.2751239Z oro.nifti 0.10.3 2021-05-16T19:53:43.2751679Z dcemriS4 0.57.2 2021-05-16T19:53:43.2752156Z > 2021-05-16T19:53:43.2752768Z > test_check("dcemriS4") 2021-05-16T19:53:43.2753342Z [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] 2021-05-16T19:53:43.2753733Z > 2021-05-16T19:53:43.2754116Z > proc.time() 2021-05-16T19:53:43.2754587Z user system elapsed 2021-05-16T19:53:43.2755039Z 0.857 0.057 0.900 2021-05-16T19:53:43.2787454Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-16T19:53:43.2788106Z Rscript -e "tic::before_deploy()" 2021-05-16T19:53:43.2833053Z shell: /usr/bin/bash -e {0} 2021-05-16T19:53:43.2833490Z env: 2021-05-16T19:53:43.2833971Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:53:43.2834490Z TIC_DEPLOY_KEY: 2021-05-16T19:53:43.2835379Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:53:43.2836854Z GITHUB_PAT: *** 2021-05-16T19:53:43.2837280Z COVERALLS_TOKEN: 2021-05-16T19:53:43.2837814Z continue-on-error: true 2021-05-16T19:53:43.2838321Z VDIFFR_RUN_TESTS: 2021-05-16T19:53:43.2838857Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:53:43.2839349Z TZ: UTC 2021-05-16T19:53:43.2839764Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:53:43.2840217Z NOT_CRAN: true 2021-05-16T19:53:43.2841226Z ##[endgroup] 2021-05-16T19:53:43.7001336Z ✔ Loading tic stage configuration from tic.R 2021-05-16T19:53:43.7058570Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-16T19:53:43.7059189Z with: 2021-05-16T19:53:43.7060124Z upload_url: https://uploads.github.com/repos/neuroconductor/dcemriS4/releases/43019635/assets{?name,label} 2021-05-16T19:53:43.7061414Z asset_path: check/dcemriS4_0.57.2_R_x86_64-pc-linux-gnu.tar.gz 2021-05-16T19:53:43.7062212Z asset_name: dcemriS4_0.57.2_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-16T19:53:43.7062944Z asset_content_type: application/octet-stream 2021-05-16T19:53:43.7063493Z env: 2021-05-16T19:53:43.7063964Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:53:43.7064484Z TIC_DEPLOY_KEY: 2021-05-16T19:53:43.7065356Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:53:43.7067199Z GITHUB_PAT: *** 2021-05-16T19:53:43.7067646Z COVERALLS_TOKEN: 2021-05-16T19:53:43.7068164Z continue-on-error: true 2021-05-16T19:53:43.7068687Z VDIFFR_RUN_TESTS: 2021-05-16T19:53:43.7069237Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:53:43.7069716Z TZ: UTC 2021-05-16T19:53:43.7070143Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:53:43.7070588Z NOT_CRAN: true 2021-05-16T19:53:43.7071488Z GITHUB_TOKEN: *** 2021-05-16T19:53:43.7071919Z ##[endgroup] 2021-05-16T19:53:44.3326746Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-16T19:53:44.3327252Z Rscript -e "tic::deploy()" 2021-05-16T19:53:44.3388890Z shell: /usr/bin/bash -e {0} 2021-05-16T19:53:44.3389334Z env: 2021-05-16T19:53:44.3389814Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:53:44.3390452Z TIC_DEPLOY_KEY: 2021-05-16T19:53:44.3391282Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:53:44.3392860Z GITHUB_PAT: *** 2021-05-16T19:53:44.3393258Z COVERALLS_TOKEN: 2021-05-16T19:53:44.3393837Z continue-on-error: true 2021-05-16T19:53:44.3394403Z VDIFFR_RUN_TESTS: 2021-05-16T19:53:44.3394828Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:53:44.3395431Z TZ: UTC 2021-05-16T19:53:44.3395818Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:53:44.3396298Z NOT_CRAN: true 2021-05-16T19:53:44.3396673Z ##[endgroup] 2021-05-16T19:53:44.7574701Z ✔ Loading tic stage configuration from tic.R 2021-05-16T19:53:44.7644411Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-16T19:53:44.7645279Z Rscript -e "tic::after_deploy()" 2021-05-16T19:53:44.7691604Z shell: /usr/bin/bash -e {0} 2021-05-16T19:53:44.7692039Z env: 2021-05-16T19:53:44.7692527Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T19:53:44.7693050Z TIC_DEPLOY_KEY: 2021-05-16T19:53:44.7693942Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T19:53:44.7695454Z GITHUB_PAT: *** 2021-05-16T19:53:44.7695881Z COVERALLS_TOKEN: 2021-05-16T19:53:44.7696425Z continue-on-error: true 2021-05-16T19:53:44.7697042Z VDIFFR_RUN_TESTS: 2021-05-16T19:53:44.7697545Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T19:53:44.7698011Z TZ: UTC 2021-05-16T19:53:44.7698402Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T19:53:44.7698834Z NOT_CRAN: true 2021-05-16T19:53:44.7699211Z ##[endgroup] 2021-05-16T19:53:45.2089395Z ✔ Loading tic stage configuration from tic.R 2021-05-16T19:53:47.1019879Z Post job cleanup. 2021-05-16T19:53:47.1521333Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-16T19:53:47.1650235Z Post job cleanup. 2021-05-16T19:53:47.2949465Z [command]/usr/bin/git version 2021-05-16T19:53:47.3010716Z git version 2.31.1 2021-05-16T19:53:47.3046644Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-16T19:53:47.3092618Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-16T19:53:47.3368937Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-16T19:53:47.3455925Z http.https://github.com/.extraheader 2021-05-16T19:53:47.3465315Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-16T19:53:47.3509093Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-16T19:53:47.3866243Z Cleaning up orphan processes