2021-05-19T20:31:29.2959654Z ##[section]Starting: Request a runner to run this job 2021-05-19T20:31:30.3438043Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:30.4291647Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:30.6907535Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:31.1536585Z ##[section]Finishing: Request a runner to run this job 2021-05-19T20:31:39.0934674Z Current runner version: '2.278.0' 2021-05-19T20:31:39.0963411Z ##[group]Operating System 2021-05-19T20:31:39.0964328Z Ubuntu 2021-05-19T20:31:39.0964870Z 20.04.2 2021-05-19T20:31:39.0965317Z LTS 2021-05-19T20:31:39.0965868Z ##[endgroup] 2021-05-19T20:31:39.0966504Z ##[group]Virtual Environment 2021-05-19T20:31:39.0967167Z Environment: ubuntu-20.04 2021-05-19T20:31:39.0967804Z Version: 20210517.1 2021-05-19T20:31:39.0968942Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210517.1/images/linux/Ubuntu2004-README.md 2021-05-19T20:31:39.0970509Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210517.1 2021-05-19T20:31:39.0971452Z ##[endgroup] 2021-05-19T20:31:39.0973630Z ##[group]GITHUB_TOKEN Permissions 2021-05-19T20:31:39.0974965Z Actions: write 2021-05-19T20:31:39.0975588Z Checks: write 2021-05-19T20:31:39.0976199Z Contents: write 2021-05-19T20:31:39.0976816Z Deployments: write 2021-05-19T20:31:39.0977556Z Issues: write 2021-05-19T20:31:39.0978190Z Metadata: read 2021-05-19T20:31:39.0978800Z Packages: write 2021-05-19T20:31:39.0979452Z PullRequests: write 2021-05-19T20:31:39.0980422Z RepositoryProjects: write 2021-05-19T20:31:39.0981225Z SecurityEvents: write 2021-05-19T20:31:39.0981839Z Statuses: write 2021-05-19T20:31:39.0982565Z ##[endgroup] 2021-05-19T20:31:39.0985865Z Prepare workflow directory 2021-05-19T20:31:39.2047916Z Prepare all required actions 2021-05-19T20:31:39.2059037Z Getting action download info 2021-05-19T20:31:39.8233086Z Download action repository 'actions/checkout@v2' 2021-05-19T20:31:41.5110559Z Download action repository 'r-lib/actions@master' 2021-05-19T20:31:43.1560061Z Download action repository 'adigherman/actions@master' 2021-05-19T20:31:46.1447970Z Download action repository 'msys2/setup-msys2@v2' 2021-05-19T20:31:47.0721363Z Download action repository 'actions/cache@v1' 2021-05-19T20:31:47.8000182Z Download action repository 'actions/upload-artifact@master' 2021-05-19T20:31:48.6910918Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-19T20:31:49.5873925Z ##[group]Run actions/checkout@v2 2021-05-19T20:31:49.5874706Z with: 2021-05-19T20:31:49.5875266Z repository: neuroconductor/dcmsort 2021-05-19T20:31:49.5876446Z token: *** 2021-05-19T20:31:49.5876941Z ssh-strict: true 2021-05-19T20:31:49.5877609Z persist-credentials: true 2021-05-19T20:31:49.5878173Z clean: true 2021-05-19T20:31:49.5878686Z fetch-depth: 1 2021-05-19T20:31:49.5879209Z lfs: false 2021-05-19T20:31:49.5879684Z submodules: false 2021-05-19T20:31:49.5880185Z env: 2021-05-19T20:31:49.5880698Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:31:49.5881301Z TIC_DEPLOY_KEY: 2021-05-19T20:31:49.5882301Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:31:49.5883692Z GITHUB_PAT: *** 2021-05-19T20:31:49.5884674Z COVERALLS_TOKEN: *** 2021-05-19T20:31:49.5885408Z continue-on-error: false 2021-05-19T20:31:49.5885940Z VDIFFR_RUN_TESTS: 2021-05-19T20:31:49.5886605Z ##[endgroup] 2021-05-19T20:31:50.1684299Z Syncing repository: neuroconductor/dcmsort 2021-05-19T20:31:50.1685347Z ##[group]Getting Git version info 2021-05-19T20:31:50.1686517Z Working directory is '/home/runner/work/dcmsort/dcmsort' 2021-05-19T20:31:50.1687274Z [command]/usr/bin/git version 2021-05-19T20:31:50.1687817Z git version 2.31.1 2021-05-19T20:31:50.1688861Z ##[endgroup] 2021-05-19T20:31:50.1689728Z Deleting the contents of '/home/runner/work/dcmsort/dcmsort' 2021-05-19T20:31:50.1690868Z ##[group]Initializing the repository 2021-05-19T20:31:50.1691630Z [command]/usr/bin/git init /home/runner/work/dcmsort/dcmsort 2021-05-19T20:31:50.1692678Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-19T20:31:50.1693537Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-19T20:31:50.1697000Z hint: of your new repositories, which will suppress this warning, call: 2021-05-19T20:31:50.1704469Z hint: 2021-05-19T20:31:50.1708641Z hint: git config --global init.defaultBranch 2021-05-19T20:31:50.1709963Z hint: 2021-05-19T20:31:50.1711229Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-19T20:31:50.1712624Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-19T20:31:50.1713730Z hint: 2021-05-19T20:31:50.1714972Z hint: git branch -m 2021-05-19T20:31:50.1716140Z Initialized empty Git repository in /home/runner/work/dcmsort/dcmsort/.git/ 2021-05-19T20:31:50.1717291Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/dcmsort 2021-05-19T20:31:50.1718160Z ##[endgroup] 2021-05-19T20:31:50.1718906Z ##[group]Disabling automatic garbage collection 2021-05-19T20:31:50.1719940Z [command]/usr/bin/git config --local gc.auto 0 2021-05-19T20:31:50.1720542Z ##[endgroup] 2021-05-19T20:31:50.1722211Z ##[group]Setting up auth 2021-05-19T20:31:50.1723204Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-19T20:31:50.1724973Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-19T20:31:50.1726761Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-19T20:31:50.1728670Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-19T20:31:50.1730371Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-19T20:31:50.1731190Z ##[endgroup] 2021-05-19T20:31:50.1731700Z ##[group]Fetching the repository 2021-05-19T20:31:50.1733701Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a:refs/tags/0.3.0.s 2021-05-19T20:31:50.7395505Z remote: Enumerating objects: 39, done. 2021-05-19T20:31:50.7399995Z remote: Counting objects: 2% (1/39) 2021-05-19T20:31:50.7403439Z remote: Counting objects: 5% (2/39) 2021-05-19T20:31:50.7406600Z remote: Counting objects: 7% (3/39) 2021-05-19T20:31:50.7408703Z remote: Counting objects: 10% (4/39) 2021-05-19T20:31:50.7412873Z remote: Counting objects: 12% (5/39) 2021-05-19T20:31:50.7414629Z remote: Counting objects: 15% (6/39) 2021-05-19T20:31:50.7415400Z remote: Counting objects: 17% (7/39) 2021-05-19T20:31:50.7418301Z remote: Counting objects: 20% (8/39) 2021-05-19T20:31:50.7420672Z remote: Counting objects: 23% (9/39) 2021-05-19T20:31:50.7424330Z remote: Counting objects: 25% (10/39) 2021-05-19T20:31:50.7426336Z remote: Counting objects: 28% (11/39) 2021-05-19T20:31:50.7429333Z remote: Counting objects: 30% (12/39) 2021-05-19T20:31:50.7432537Z remote: Counting objects: 33% (13/39) 2021-05-19T20:31:50.7434694Z remote: Counting objects: 35% (14/39) 2021-05-19T20:31:50.7437413Z remote: Counting objects: 38% (15/39) 2021-05-19T20:31:50.7439362Z remote: Counting objects: 41% (16/39) 2021-05-19T20:31:50.7441241Z remote: Counting objects: 43% (17/39) 2021-05-19T20:31:50.7443713Z remote: Counting objects: 46% (18/39) 2021-05-19T20:31:50.7445446Z remote: Counting objects: 48% (19/39) 2021-05-19T20:31:50.7447743Z remote: Counting objects: 51% (20/39) 2021-05-19T20:31:50.7450267Z remote: Counting objects: 53% (21/39) 2021-05-19T20:31:50.7452871Z remote: Counting objects: 56% (22/39) 2021-05-19T20:31:50.7455785Z remote: Counting objects: 58% (23/39) 2021-05-19T20:31:50.7456421Z remote: Counting objects: 61% (24/39) 2021-05-19T20:31:50.7457000Z remote: Counting objects: 64% (25/39) 2021-05-19T20:31:50.7474186Z remote: Counting objects: 66% (26/39) 2021-05-19T20:31:50.7474904Z remote: Counting objects: 69% (27/39) 2021-05-19T20:31:50.7475761Z remote: Counting objects: 71% (28/39) 2021-05-19T20:31:50.7476298Z remote: Counting objects: 74% (29/39) 2021-05-19T20:31:50.7477131Z remote: Counting objects: 76% (30/39) 2021-05-19T20:31:50.7477810Z remote: Counting objects: 79% (31/39) 2021-05-19T20:31:50.7478464Z remote: Counting objects: 82% (32/39) 2021-05-19T20:31:50.7479152Z remote: Counting objects: 84% (33/39) 2021-05-19T20:31:50.7479841Z remote: Counting objects: 87% (34/39) 2021-05-19T20:31:50.7480481Z remote: Counting objects: 89% (35/39) 2021-05-19T20:31:50.7481216Z remote: Counting objects: 92% (36/39) 2021-05-19T20:31:50.7481876Z remote: Counting objects: 94% (37/39) 2021-05-19T20:31:50.7482519Z remote: Counting objects: 97% (38/39) 2021-05-19T20:31:50.7483182Z remote: Counting objects: 100% (39/39) 2021-05-19T20:31:50.7483894Z remote: Counting objects: 100% (39/39), done. 2021-05-19T20:31:50.7484611Z remote: Compressing objects: 2% (1/34) 2021-05-19T20:31:50.7485336Z remote: Compressing objects: 5% (2/34) 2021-05-19T20:31:50.7486021Z remote: Compressing objects: 8% (3/34) 2021-05-19T20:31:50.7486691Z remote: Compressing objects: 11% (4/34) 2021-05-19T20:31:50.7487387Z remote: Compressing objects: 14% (5/34) 2021-05-19T20:31:50.7488066Z remote: Compressing objects: 17% (6/34) 2021-05-19T20:31:50.7488725Z remote: Compressing objects: 20% (7/34) 2021-05-19T20:31:50.7489473Z remote: Compressing objects: 23% (8/34) 2021-05-19T20:31:50.7490153Z remote: Compressing objects: 26% (9/34) 2021-05-19T20:31:50.7490817Z remote: Compressing objects: 29% (10/34) 2021-05-19T20:31:50.7491521Z remote: Compressing objects: 32% (11/34) 2021-05-19T20:31:50.7492200Z remote: Compressing objects: 35% (12/34) 2021-05-19T20:31:50.7492866Z remote: Compressing objects: 38% (13/34) 2021-05-19T20:31:50.7493673Z remote: Compressing objects: 41% (14/34) 2021-05-19T20:31:50.7494374Z remote: Compressing objects: 44% (15/34) 2021-05-19T20:31:50.7495035Z remote: Compressing objects: 47% (16/34) 2021-05-19T20:31:50.7495726Z remote: Compressing objects: 50% (17/34) 2021-05-19T20:31:50.7496604Z remote: Compressing objects: 52% (18/34) 2021-05-19T20:31:50.7497315Z remote: Compressing objects: 55% (19/34) 2021-05-19T20:31:50.7498061Z remote: Compressing objects: 58% (20/34) 2021-05-19T20:31:50.7498811Z remote: Compressing objects: 61% (21/34) 2021-05-19T20:31:50.7499664Z remote: Compressing objects: 64% (22/34) 2021-05-19T20:31:50.7500476Z remote: Compressing objects: 67% (23/34) 2021-05-19T20:31:50.8175264Z remote: Compressing objects: 70% (24/34) 2021-05-19T20:31:50.8176836Z remote: Compressing objects: 73% (25/34) 2021-05-19T20:31:50.8177988Z remote: Compressing objects: 76% (26/34) 2021-05-19T20:31:50.8179290Z remote: Compressing objects: 79% (27/34) 2021-05-19T20:31:50.8181029Z remote: Compressing objects: 82% (28/34) 2021-05-19T20:31:50.8182163Z remote: Compressing objects: 85% (29/34) 2021-05-19T20:31:50.8183277Z remote: Compressing objects: 88% (30/34) 2021-05-19T20:31:50.8184407Z remote: Compressing objects: 91% (31/34) 2021-05-19T20:31:50.8185531Z remote: Compressing objects: 94% (32/34) 2021-05-19T20:31:50.8186637Z remote: Compressing objects: 97% (33/34) 2021-05-19T20:31:50.8187757Z remote: Compressing objects: 100% (34/34) 2021-05-19T20:31:50.8188938Z remote: Compressing objects: 100% (34/34), done. 2021-05-19T20:31:50.9038172Z remote: Total 39 (delta 1), reused 26 (delta 1), pack-reused 0 2021-05-19T20:31:50.9125267Z From https://github.com/neuroconductor/dcmsort 2021-05-19T20:31:50.9127045Z * [new ref] f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a -> 0.3.0.s 2021-05-19T20:31:50.9151445Z ##[endgroup] 2021-05-19T20:31:50.9152595Z ##[group]Determining the checkout info 2021-05-19T20:31:50.9153643Z ##[endgroup] 2021-05-19T20:31:50.9154353Z ##[group]Checking out the ref 2021-05-19T20:31:50.9159065Z [command]/usr/bin/git checkout --progress --force refs/tags/0.3.0.s 2021-05-19T20:31:50.9229907Z Note: switching to 'refs/tags/0.3.0.s'. 2021-05-19T20:31:50.9230370Z 2021-05-19T20:31:50.9231219Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-19T20:31:50.9232106Z changes and commit them, and you can discard any commits you make in this 2021-05-19T20:31:50.9232941Z state without impacting any branches by switching back to a branch. 2021-05-19T20:31:50.9233439Z 2021-05-19T20:31:50.9234016Z If you want to create a new branch to retain commits you create, you may 2021-05-19T20:31:50.9234986Z do so (now or later) by using -c with the switch command. Example: 2021-05-19T20:31:50.9235442Z 2021-05-19T20:31:50.9236060Z git switch -c 2021-05-19T20:31:50.9236461Z 2021-05-19T20:31:50.9236973Z Or undo this operation with: 2021-05-19T20:31:50.9237293Z 2021-05-19T20:31:50.9237749Z git switch - 2021-05-19T20:31:50.9238000Z 2021-05-19T20:31:50.9238630Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-19T20:31:50.9239169Z 2021-05-19T20:31:50.9239586Z HEAD is now at f0a56ec Version id 86 stable 2021-05-19T20:31:50.9254443Z ##[endgroup] 2021-05-19T20:31:50.9299343Z [command]/usr/bin/git log -1 --format='%H' 2021-05-19T20:31:50.9326270Z 'f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a' 2021-05-19T20:31:50.9522414Z ##[group]Run r-lib/actions/setup-r@master 2021-05-19T20:31:50.9522896Z with: 2021-05-19T20:31:50.9523313Z r-version: release 2021-05-19T20:31:50.9524367Z Ncpus: 1 2021-05-19T20:31:50.9524870Z crayon.enabled: NULL 2021-05-19T20:31:50.9525489Z remove-openmp-macos: true 2021-05-19T20:31:50.9526120Z http-user-agent: default 2021-05-19T20:31:50.9526657Z install-r: true 2021-05-19T20:31:50.9527303Z windows-path-include-mingw: true 2021-05-19T20:31:50.9527926Z env: 2021-05-19T20:31:50.9528408Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:31:50.9528940Z TIC_DEPLOY_KEY: 2021-05-19T20:31:50.9529891Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:31:50.9531803Z GITHUB_PAT: *** 2021-05-19T20:31:50.9532754Z COVERALLS_TOKEN: *** 2021-05-19T20:31:50.9533323Z continue-on-error: false 2021-05-19T20:31:50.9533850Z VDIFFR_RUN_TESTS: 2021-05-19T20:31:50.9534295Z ##[endgroup] 2021-05-19T20:31:51.7354428Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-19T20:31:53.5556733Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-19T20:31:53.5567417Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-19T20:31:53.5585955Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-19T20:31:53.5860867Z Get:4 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-19T20:31:53.6000519Z Get:5 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] 2021-05-19T20:31:53.6075578Z Hit:6 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-19T20:31:53.7049523Z Get:7 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-19T20:31:53.8209946Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [988 kB] 2021-05-19T20:31:53.8398129Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [224 kB] 2021-05-19T20:31:53.8431826Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.4 kB] 2021-05-19T20:31:53.8448889Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-19T20:31:53.8477526Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 c-n-f Metadata [436 B] 2021-05-19T20:31:53.8482346Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [777 kB] 2021-05-19T20:31:53.8601919Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-19T20:31:53.8622016Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-19T20:31:53.8638040Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [21.7 kB] 2021-05-19T20:31:53.8640020Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse Translation-en [5564 B] 2021-05-19T20:31:53.8641934Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 c-n-f Metadata [604 B] 2021-05-19T20:31:53.9550959Z Hit:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-19T20:31:54.0245173Z Get:20 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.3 kB] 2021-05-19T20:31:57.1273057Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [664 kB] 2021-05-19T20:31:57.2863276Z Get:22 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [134 kB] 2021-05-19T20:31:57.2895696Z Get:23 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7668 B] 2021-05-19T20:31:57.2902115Z Get:24 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [207 kB] 2021-05-19T20:31:57.2952681Z Get:25 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [30.7 kB] 2021-05-19T20:31:57.2963355Z Get:26 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 c-n-f Metadata [440 B] 2021-05-19T20:31:57.2970794Z Get:27 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [578 kB] 2021-05-19T20:31:57.4402116Z Get:28 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [90.1 kB] 2021-05-19T20:31:57.4431920Z Get:29 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.3 kB] 2021-05-19T20:31:57.4433522Z Get:30 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [19.9 kB] 2021-05-19T20:31:57.4435136Z Get:31 http://security.ubuntu.com/ubuntu focal-security/multiverse Translation-en [4316 B] 2021-05-19T20:31:57.4436728Z Get:32 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 c-n-f Metadata [528 B] 2021-05-19T20:32:02.1787942Z Fetched 4619 kB in 4s (1138 kB/s) 2021-05-19T20:32:03.0148308Z Reading package lists... 2021-05-19T20:32:03.0397648Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-19T20:32:04.9553229Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-19T20:32:05.0252536Z Reading package lists... 2021-05-19T20:32:05.1905633Z Building dependency tree... 2021-05-19T20:32:05.1921085Z Reading state information... 2021-05-19T20:32:05.3532016Z The following additional packages will be installed: 2021-05-19T20:32:05.3541776Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-19T20:32:05.3544373Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-19T20:32:05.3547332Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-19T20:32:05.3550385Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-19T20:32:05.3553316Z libconst-fast-perl libcontextual-return-perl libcpanel-json-xs-perl 2021-05-19T20:32:05.3556215Z libcroco3 libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-19T20:32:05.3559207Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-19T20:32:05.3562175Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-19T20:32:05.3564965Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-19T20:32:05.3567278Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-19T20:32:05.3569930Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-19T20:32:05.3573004Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-19T20:32:05.3576206Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-19T20:32:05.3578834Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-19T20:32:05.3581617Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-19T20:32:05.3584086Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-19T20:32:05.3585690Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-19T20:32:05.3587453Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-19T20:32:05.3588967Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-19T20:32:05.3590302Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-19T20:32:05.3591678Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-19T20:32:05.3593230Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-19T20:32:05.3594917Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-19T20:32:05.3596451Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-19T20:32:05.3597900Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-19T20:32:05.3599468Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-19T20:32:05.3601031Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-19T20:32:05.3602762Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-19T20:32:05.3604388Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-19T20:32:05.3605942Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-19T20:32:05.3607740Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-19T20:32:05.3609310Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-19T20:32:05.3610723Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-19T20:32:05.3612062Z libtype-tiny-perl libtype-tiny-xs-perl libunicode-utf8-perl 2021-05-19T20:32:05.3613447Z libvariable-magic-perl libwant-perl libxml-writer-perl libyaml-libyaml-perl 2021-05-19T20:32:05.3614791Z licensecheck lintian patchutils python3-gpg python3-magic python3-unidiff 2021-05-19T20:32:05.3615684Z python3-xdg t1utils wdiff 2021-05-19T20:32:05.3616288Z Suggested packages: 2021-05-19T20:32:05.3617106Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-19T20:32:05.3618286Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-19T20:32:05.3619527Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-19T20:32:05.3620922Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-19T20:32:05.3622200Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-19T20:32:05.3623347Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-19T20:32:05.3624542Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-19T20:32:05.3625892Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-19T20:32:05.3627453Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-19T20:32:05.3628808Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-19T20:32:05.4225385Z The following NEW packages will be installed: 2021-05-19T20:32:05.4235208Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-19T20:32:05.4236822Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-19T20:32:05.4238594Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-19T20:32:05.4240577Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-19T20:32:05.4242354Z libclone-perl libconst-fast-perl libcontextual-return-perl 2021-05-19T20:32:05.4245856Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-19T20:32:05.4247580Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-19T20:32:05.4249438Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-19T20:32:05.4254541Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-19T20:32:05.4256475Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-19T20:32:05.4258979Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-19T20:32:05.4260795Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-19T20:32:05.4262451Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-19T20:32:05.4264087Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-19T20:32:05.4265467Z libipc-run-perl libjson-maybexs-perl liblinux-epoll-perl 2021-05-19T20:32:05.4266891Z liblist-compare-perl liblist-moreutils-perl liblist-someutils-perl 2021-05-19T20:32:05.4268559Z liblist-someutils-xs-perl liblog-any-adapter-screen-perl liblog-any-perl 2021-05-19T20:32:05.4270238Z libmodule-implementation-perl libmodule-runtime-perl libmoo-perl 2021-05-19T20:32:05.4271775Z libmoox-aliases-perl libmoox-struct-perl libnamespace-clean-perl 2021-05-19T20:32:05.4273318Z libnet-dns-perl libnet-dns-sec-perl libnet-domain-tld-perl libnet-ip-perl 2021-05-19T20:32:05.4274803Z libnet-libidn-perl libnumber-compare-perl libnumber-range-perl 2021-05-19T20:32:05.4276467Z libobject-id-perl libpackage-stash-perl libpackage-stash-xs-perl 2021-05-19T20:32:05.4278043Z libparams-classify-perl libparams-util-perl libparams-validate-perl 2021-05-19T20:32:05.4279620Z libpath-iterator-rule-perl libpath-tiny-perl libperl4-corelibs-perl 2021-05-19T20:32:05.4281221Z libperlio-gzip-perl libpod-constants-perl libqpdf26 libre-engine-re2-perl 2021-05-19T20:32:05.4282620Z libreadonly-perl libref-util-perl libref-util-xs-perl 2021-05-19T20:32:05.4284118Z libregexp-pattern-license-perl libregexp-pattern-perl librole-tiny-perl 2021-05-19T20:32:05.4285725Z libsereal-decoder-perl libsereal-encoder-perl libsereal-perl 2021-05-19T20:32:05.4287108Z libsort-key-perl libsort-versions-perl libstrictures-perl 2021-05-19T20:32:05.4288659Z libstring-copyright-perl libstring-escape-perl libstring-shellquote-perl 2021-05-19T20:32:05.4290439Z libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl 2021-05-19T20:32:05.4292122Z libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl 2021-05-19T20:32:05.4293623Z libterm-readkey-perl libtest-fatal-perl libtest-refcount-perl 2021-05-19T20:32:05.4295139Z libtext-glob-perl libtext-levenshtein-perl libtype-tiny-perl 2021-05-19T20:32:05.4296478Z libtype-tiny-xs-perl libunicode-utf8-perl libvariable-magic-perl 2021-05-19T20:32:05.4297889Z libwant-perl libxml-writer-perl libyaml-libyaml-perl licensecheck lintian 2021-05-19T20:32:05.4299154Z patchutils python3-gpg python3-magic python3-unidiff python3-xdg qpdf 2021-05-19T20:32:05.4299970Z t1utils wdiff 2021-05-19T20:32:05.4520256Z 0 upgraded, 126 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:05.4521223Z Need to get 8451 kB of archives. 2021-05-19T20:32:05.4522060Z After this operation, 31.7 MB of additional disk space will be used. 2021-05-19T20:32:05.4523937Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-19T20:32:05.4639831Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-19T20:32:05.4647923Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-19T20:32:05.4671946Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-19T20:32:05.4673887Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-19T20:32:05.4689459Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-19T20:32:05.4697772Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-19T20:32:05.4704750Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-19T20:32:05.4710335Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-19T20:32:05.4715837Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-19T20:32:05.4724688Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-19T20:32:05.4730301Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-19T20:32:05.4733135Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-19T20:32:05.4735688Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-19T20:32:05.4737409Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-19T20:32:05.4754525Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-19T20:32:05.4767346Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-19T20:32:05.4786491Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-19T20:32:05.4791581Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-19T20:32:05.4961807Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-19T20:32:05.4972131Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-19T20:32:05.5004216Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-19T20:32:05.5017993Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-19T20:32:05.5044780Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-19T20:32:05.5057723Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-19T20:32:05.5204905Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-19T20:32:05.5216144Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-19T20:32:05.5389409Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-19T20:32:05.5393152Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-19T20:32:05.5396223Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-19T20:32:05.5398739Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-19T20:32:05.5402042Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-19T20:32:05.5421719Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-19T20:32:05.5424276Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-19T20:32:05.5426375Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-19T20:32:05.5428296Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-19T20:32:05.5430304Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-19T20:32:05.5432013Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-19T20:32:05.5434175Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-19T20:32:05.5435990Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-19T20:32:05.5438025Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-19T20:32:05.5439778Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-19T20:32:05.5441499Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-19T20:32:05.5443295Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-19T20:32:05.5445543Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-19T20:32:05.5481961Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-19T20:32:05.5484066Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-19T20:32:05.5485951Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-19T20:32:05.5487646Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-19T20:32:05.5489275Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-19T20:32:05.5491004Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-19T20:32:05.5633904Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-19T20:32:05.5645632Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-19T20:32:05.5647749Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-19T20:32:05.5649825Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-19T20:32:05.5653084Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-19T20:32:05.5655129Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-19T20:32:05.5657185Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-19T20:32:05.5659187Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-19T20:32:05.5661480Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-19T20:32:05.5664483Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-19T20:32:05.5666842Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-19T20:32:05.5673516Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-19T20:32:05.5679744Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-19T20:32:05.5687681Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-19T20:32:05.5691999Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-19T20:32:05.5699907Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-19T20:32:05.5708622Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-19T20:32:05.5715089Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-19T20:32:05.5721569Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-19T20:32:05.5727503Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-19T20:32:05.5734228Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-19T20:32:05.5742299Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-19T20:32:05.5750249Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-19T20:32:05.5796498Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-19T20:32:05.5813555Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-19T20:32:05.5821848Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-19T20:32:05.5828200Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-19T20:32:05.5864278Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-19T20:32:05.5873858Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-19T20:32:05.5879997Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-19T20:32:05.5885948Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-19T20:32:05.5898977Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-19T20:32:05.5908805Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-19T20:32:05.5928345Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-19T20:32:05.5936832Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-19T20:32:05.5944207Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-19T20:32:05.5951347Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-19T20:32:05.5959106Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-19T20:32:05.5970192Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-19T20:32:05.5977032Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-19T20:32:05.5985729Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-19T20:32:05.5992805Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-19T20:32:05.6003857Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-19T20:32:05.6011892Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-19T20:32:05.6020492Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-19T20:32:05.6027854Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-19T20:32:05.6094603Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-19T20:32:05.6102666Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-19T20:32:05.6109431Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-19T20:32:05.6115499Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-19T20:32:05.6158949Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-19T20:32:05.6196330Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-19T20:32:05.6204653Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-19T20:32:05.6236808Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-19T20:32:05.6268588Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-19T20:32:05.6274567Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-19T20:32:05.6284587Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-19T20:32:05.6292102Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-19T20:32:05.6298163Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-19T20:32:05.6304208Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-19T20:32:05.6310701Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-19T20:32:05.6316278Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-19T20:32:05.6322093Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-19T20:32:05.6327735Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-19T20:32:05.6334563Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-19T20:32:05.6341612Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-19T20:32:05.6347312Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-19T20:32:05.6353301Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-19T20:32:05.6358547Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-19T20:32:05.6364113Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-19T20:32:05.6371412Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-19T20:32:05.6601833Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-19T20:32:05.6605385Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-19T20:32:05.6613432Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-19T20:32:05.6657081Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-19T20:32:06.4375551Z Fetched 8451 kB in 0s (36.0 MB/s) 2021-05-19T20:32:06.4766262Z Selecting previously unselected package dctrl-tools. 2021-05-19T20:32:06.4965605Z (Reading database ... 2021-05-19T20:32:06.4966165Z (Reading database ... 5% 2021-05-19T20:32:06.4967583Z (Reading database ... 10% 2021-05-19T20:32:06.4968111Z (Reading database ... 15% 2021-05-19T20:32:06.4968603Z (Reading database ... 20% 2021-05-19T20:32:06.4969081Z (Reading database ... 25% 2021-05-19T20:32:06.4969602Z (Reading database ... 30% 2021-05-19T20:32:06.4970072Z (Reading database ... 35% 2021-05-19T20:32:06.4970555Z (Reading database ... 40% 2021-05-19T20:32:06.4971040Z (Reading database ... 45% 2021-05-19T20:32:06.4971516Z (Reading database ... 50% 2021-05-19T20:32:06.5384627Z (Reading database ... 55% 2021-05-19T20:32:06.5789268Z (Reading database ... 60% 2021-05-19T20:32:06.6247345Z (Reading database ... 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package libstrictures-perl. 2021-05-19T20:32:07.8025923Z Preparing to unpack .../013-libstrictures-perl_2.000006-1_all.deb ... 2021-05-19T20:32:07.8049313Z Unpacking libstrictures-perl (2.000006-1) ... 2021-05-19T20:32:07.8313020Z Selecting previously unselected package libsub-quote-perl. 2021-05-19T20:32:07.8558978Z Preparing to unpack .../014-libsub-quote-perl_2.006006-1_all.deb ... 2021-05-19T20:32:07.8577011Z Unpacking libsub-quote-perl (2.006006-1) ... 2021-05-19T20:32:07.8863854Z Selecting previously unselected package libmoo-perl. 2021-05-19T20:32:07.9088245Z Preparing to unpack .../015-libmoo-perl_2.003006-1_all.deb ... 2021-05-19T20:32:07.9103917Z Unpacking libmoo-perl (2.003006-1) ... 2021-05-19T20:32:07.9502101Z Selecting previously unselected package patchutils. 2021-05-19T20:32:07.9664787Z Preparing to unpack .../016-patchutils_0.3.4-2_amd64.deb ... 2021-05-19T20:32:07.9681126Z Unpacking patchutils (0.3.4-2) ... 2021-05-19T20:32:08.0100795Z Selecting previously unselected package wdiff. 2021-05-19T20:32:08.0298560Z Preparing to unpack .../017-wdiff_1.2.2-2build1_amd64.deb ... 2021-05-19T20:32:08.0318423Z Unpacking wdiff (1.2.2-2build1) ... 2021-05-19T20:32:08.0900684Z Selecting previously unselected package devscripts. 2021-05-19T20:32:08.1075838Z Preparing to unpack .../018-devscripts_2.20.2ubuntu2_amd64.deb ... 2021-05-19T20:32:08.1328159Z Unpacking devscripts (2.20.2ubuntu2) ... 2021-05-19T20:32:08.2701548Z Selecting previously unselected package diffstat. 2021-05-19T20:32:08.2896690Z Preparing to unpack .../019-diffstat_1.63-1_amd64.deb ... 2021-05-19T20:32:08.2913667Z Unpacking diffstat (1.63-1) ... 2021-05-19T20:32:08.3262847Z Selecting previously unselected package python3-gpg. 2021-05-19T20:32:08.3482708Z Preparing to unpack .../020-python3-gpg_1.13.1-7ubuntu2_amd64.deb ... 2021-05-19T20:32:08.3499717Z Unpacking python3-gpg (1.13.1-7ubuntu2) ... 2021-05-19T20:32:08.4061826Z Selecting previously unselected package dput. 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package libasync-mergepoint-perl. 2021-05-19T20:32:09.1621269Z Preparing to unpack .../029-libasync-mergepoint-perl_0.04-2_all.deb ... 2021-05-19T20:32:09.1622388Z Unpacking libasync-mergepoint-perl (0.04-2) ... 2021-05-19T20:32:09.1701962Z Selecting previously unselected package libmodule-implementation-perl. 2021-05-19T20:32:09.1875857Z Preparing to unpack .../030-libmodule-implementation-perl_0.09-1_all.deb ... 2021-05-19T20:32:09.1886268Z Unpacking libmodule-implementation-perl (0.09-1) ... 2021-05-19T20:32:09.2141166Z Selecting previously unselected package libsub-exporter-progressive-perl. 2021-05-19T20:32:09.2322791Z Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-1_all.deb ... 2021-05-19T20:32:09.2333412Z Unpacking libsub-exporter-progressive-perl (0.001013-1) ... 2021-05-19T20:32:09.2562525Z Selecting previously unselected package libvariable-magic-perl. 2021-05-19T20:32:09.2802179Z Preparing to unpack .../032-libvariable-magic-perl_0.62-1build2_amd64.deb 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previously unselected package libsub-exporter-perl. 2021-05-19T20:32:09.6826144Z Preparing to unpack .../040-libsub-exporter-perl_0.987-1_all.deb ... 2021-05-19T20:32:09.6838744Z Unpacking libsub-exporter-perl (0.987-1) ... 2021-05-19T20:32:09.7141727Z Selecting previously unselected package libconst-fast-perl. 2021-05-19T20:32:09.7360841Z Preparing to unpack .../041-libconst-fast-perl_0.014-1_all.deb ... 2021-05-19T20:32:09.7371990Z Unpacking libconst-fast-perl (0.014-1) ... 2021-05-19T20:32:09.7661379Z Selecting previously unselected package libwant-perl. 2021-05-19T20:32:09.7836954Z Preparing to unpack .../042-libwant-perl_0.29-1build4_amd64.deb ... 2021-05-19T20:32:09.7847410Z Unpacking libwant-perl (0.29-1build4) ... 2021-05-19T20:32:09.8142565Z Selecting previously unselected package libcontextual-return-perl. 2021-05-19T20:32:09.8353350Z Preparing to unpack .../043-libcontextual-return-perl_0.004014-2_all.deb ... 2021-05-19T20:32:09.8364452Z Unpacking libcontextual-return-perl 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2021-05-19T20:32:12.1540610Z Selecting previously unselected package libmoox-aliases-perl. 2021-05-19T20:32:12.1778655Z Preparing to unpack .../085-libmoox-aliases-perl_0.001006-1_all.deb ... 2021-05-19T20:32:12.1792544Z Unpacking libmoox-aliases-perl (0.001006-1) ... 2021-05-19T20:32:12.2024759Z Selecting previously unselected package libobject-id-perl. 2021-05-19T20:32:12.2266106Z Preparing to unpack .../086-libobject-id-perl_0.1.2-2ubuntu1_all.deb ... 2021-05-19T20:32:12.2276443Z Unpacking libobject-id-perl (0.1.2-2ubuntu1) ... 2021-05-19T20:32:12.2541434Z Selecting previously unselected package libmoox-struct-perl. 2021-05-19T20:32:12.2753721Z Preparing to unpack .../087-libmoox-struct-perl_0.017-1_all.deb ... 2021-05-19T20:32:12.2767708Z Unpacking libmoox-struct-perl (0.017-1) ... 2021-05-19T20:32:12.3028335Z Selecting previously unselected package libnet-dns-sec-perl. 2021-05-19T20:32:12.3309011Z Preparing to unpack .../088-libnet-dns-sec-perl_1.15-1_amd64.deb ... 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r-4.1.0 (1) ... 2021-05-19T20:32:39.2836955Z 2021-05-19T20:32:39.2837690Z 2021-05-19T20:32:39.2838312Z Reading state information... Done 2021-05-19T20:32:39.3127530Z [command]/usr/bin/sudo ln -s /opt/R/4.1.0/bin/R /usr/local/bin/R 2021-05-19T20:32:39.3250089Z [command]/usr/bin/sudo ln -s /opt/R/4.1.0/bin/Rscript /usr/local/bin/Rscript 2021-05-19T20:32:39.3551782Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-19T20:32:39.3552454Z env: 2021-05-19T20:32:39.3553138Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:39.3553689Z TIC_DEPLOY_KEY: 2021-05-19T20:32:39.3554598Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:39.3556473Z GITHUB_PAT: *** 2021-05-19T20:32:39.3557388Z COVERALLS_TOKEN: *** 2021-05-19T20:32:39.3557946Z continue-on-error: false 2021-05-19T20:32:39.3558470Z VDIFFR_RUN_TESTS: 2021-05-19T20:32:39.3559009Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:32:39.3559492Z TZ: UTC 2021-05-19T20:32:39.3559929Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:32:39.3560396Z NOT_CRAN: true 2021-05-19T20:32:39.3560802Z ##[endgroup] 2021-05-19T20:32:39.4110031Z [command]sudo apt-get install -y texinfo 2021-05-19T20:32:39.7277569Z Reading package lists... 2021-05-19T20:32:39.8926074Z Building dependency tree... 2021-05-19T20:32:39.8945304Z Reading state information... 2021-05-19T20:32:40.1150537Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-19T20:32:40.1151810Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:40.6536435Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-19T20:32:40.6700016Z --2021-05-19 20:32:40-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-19T20:32:40.6783367Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-19T20:32:40.6805020Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-19T20:32:40.6962946Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-19T20:32:40.6965260Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-19T20:32:40.6967597Z --2021-05-19 20:32:40-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-19T20:32:40.7274628Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-19T20:32:40.7897331Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-19T20:32:41.0141084Z HTTP request sent, awaiting response... 302 Found 2021-05-19T20:32:41.0147660Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=Gi%2Fx6aCpZd1xVSaTElGi2jXETTgbr35r0DEjBc0QiXM%3D&st=2021-05-19T20%3A31%3A40Z&se=2021-05-19T20%3A37%3A40Z&sp=r [following] 2021-05-19T20:32:41.0155751Z --2021-05-19 20:32:41-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=Gi%2Fx6aCpZd1xVSaTElGi2jXETTgbr35r0DEjBc0QiXM%3D&st=2021-05-19T20%3A31%3A40Z&se=2021-05-19T20%3A37%3A40Z&sp=r 2021-05-19T20:32:41.0566326Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-19T20:32:41.1181308Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-19T20:32:41.3817853Z HTTP request sent, awaiting response... 200 OK 2021-05-19T20:32:41.3819904Z Length: 67306919 (64M) [application/octet-stream] 2021-05-19T20:32:41.3821902Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-19T20:32:41.9354768Z 2021-05-19T20:32:43.5354746Z 0K ........ ........ ........ ........ 49% 15.6M 2s 2021-05-19T20:32:44.9332931Z 32768K ........ ........ ........ ........ 99% 22.2M 0s 2021-05-19T20:32:44.9333996Z 65536K 100% 2.98M=3.6s 2021-05-19T20:32:44.9334721Z 2021-05-19T20:32:44.9340478Z 2021-05-19 20:32:44 (18.1 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-19T20:32:44.9341563Z 2021-05-19T20:32:47.4048280Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-19T20:32:47.4050114Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-19T20:32:47.7099167Z ##[group]Run tlmgr update --self 2021-05-19T20:32:47.7099960Z tlmgr update --self 2021-05-19T20:32:47.7100877Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-19T20:32:47.7101802Z tlmgr update --all 2021-05-19T20:32:47.7148414Z shell: /usr/bin/bash -e {0} 2021-05-19T20:32:47.7148834Z env: 2021-05-19T20:32:47.7149285Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:47.7149781Z TIC_DEPLOY_KEY: 2021-05-19T20:32:47.7150628Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:47.7152363Z GITHUB_PAT: *** 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2021-05-19T20:32:57.5211992Z [66/89, 00:05/00:05] install: optex.x86_64-linux [1k] 2021-05-19T20:32:57.5887871Z [67/89, 00:05/00:05] install: optex [770k] 2021-05-19T20:32:57.6791224Z [68/89, 00:05/00:05] install: pdfarticle [4k] 2021-05-19T20:32:57.7195499Z [69/89, 00:05/00:05] install: pdfextra [22k] 2021-05-19T20:32:57.7628312Z [70/89, 00:05/00:05] install: placeat [4k] 2021-05-19T20:32:57.8060494Z [71/89, 00:05/00:05] install: plantuml [3k] 2021-05-19T20:32:57.8488832Z [72/89, 00:05/00:05] install: rsfs [55k] 2021-05-19T20:32:57.8967433Z [73/89, 00:05/00:05] install: selnolig [53k] 2021-05-19T20:32:57.9460659Z [74/89, 00:05/00:05] install: spelling [14k] 2021-05-19T20:32:57.9917638Z [75/89, 00:05/00:05] install: stricttex [2k] 2021-05-19T20:32:58.0324198Z [76/89, 00:06/00:06] install: texlive-common [1k] 2021-05-19T20:32:58.0727078Z [77/89, 00:06/00:06] install: texlive-en [1k] 2021-05-19T20:32:58.1167029Z [78/89, 00:06/00:06] install: texlive-msg-translations [144k] 2021-05-19T20:32:58.1748965Z [79/89, 00:06/00:06] install: thumbpdf.x86_64-linux [1k] 2021-05-19T20:32:58.2143952Z [80/89, 00:06/00:06] install: thumbpdf [19k] 2021-05-19T20:32:58.2560212Z [81/89, 00:06/00:06] install: tlshell.x86_64-linux [1k] 2021-05-19T20:32:58.2964665Z [82/89, 00:06/00:06] install: tlshell [29k] 2021-05-19T20:32:58.3422024Z [83/89, 00:06/00:06] install: typewriter [25k] 2021-05-19T20:32:58.3893515Z [84/89, 00:06/00:06] install: uninormalize [6k] 2021-05-19T20:32:58.4317756Z [85/89, 00:06/00:06] install: upquote [2k] 2021-05-19T20:32:58.4842714Z [86/89, 00:06/00:06] install: xdvi.x86_64-linux [530k] 2021-05-19T20:32:58.5847839Z [87/89, 00:06/00:06] install: xdvi [7k] 2021-05-19T20:32:58.6319748Z [88/89, 00:06/00:06] install: collection-basic [1k] 2021-05-19T20:32:58.6756651Z [89/89, 00:06/00:06] install: collection-luatex [1k] 2021-05-19T20:32:58.6958982Z running mktexlsr ... 2021-05-19T20:32:58.7803919Z done running mktexlsr. 2021-05-19T20:32:58.8117069Z running updmap-sys ... 2021-05-19T20:32:59.0928694Z done running updmap-sys. 2021-05-19T20:32:59.0930223Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-05-19T20:32:59.0932825Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/TlnaioAYol/GTXTk1gPuG ... 2021-05-19T20:32:59.4806221Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/TlnaioAYol/GTXTk1gPuG. 2021-05-19T20:32:59.4807958Z OK: optex.fmt/luatex 2021-05-19T20:32:59.4809245Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-19T20:32:59.4810788Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-19T20:33:00.9091668Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-19T20:33:01.0489807Z /home/runner/.TinyTeX/bin/x86_64-linux/tlmgr: (make_container __BACKUP_texlive-scripts.r59219.tar) install-tl does not exist 2021-05-19T20:33:01.0494777Z [1/2, ??:??/??:??] update: latexmk [92k] (59081 -> 59258) ... done 2021-05-19T20:33:01.1540290Z [2/2, 00:01/00:02] update: texlive-scripts [106k] (59219 -> 59251) ... done 2021-05-19T20:33:01.1541651Z running mktexlsr ... 2021-05-19T20:33:01.2382505Z done running mktexlsr. 2021-05-19T20:33:01.2703437Z running updmap-sys ... 2021-05-19T20:33:01.5606639Z done running updmap-sys. 2021-05-19T20:33:01.5608448Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-19T20:33:01.5610164Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-19T20:33:01.6439978Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-19T20:33:01.6440536Z with: 2021-05-19T20:33:01.6440987Z pandoc-version: 2.7.3 2021-05-19T20:33:01.6441420Z env: 2021-05-19T20:33:01.6441904Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:33:01.6442537Z TIC_DEPLOY_KEY: 2021-05-19T20:33:01.6443439Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:33:01.6445353Z GITHUB_PAT: *** 2021-05-19T20:33:01.6446258Z COVERALLS_TOKEN: *** 2021-05-19T20:33:01.6446803Z continue-on-error: false 2021-05-19T20:33:01.6447338Z VDIFFR_RUN_TESTS: 2021-05-19T20:33:01.6447865Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:33:01.6448362Z TZ: UTC 2021-05-19T20:33:01.6448798Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:33:01.6449246Z NOT_CRAN: true 2021-05-19T20:33:01.6449672Z ##[endgroup] 2021-05-19T20:33:02.3848969Z [command]sudo apt-get install -y gdebi-core 2021-05-19T20:33:02.4576129Z Reading package lists... 2021-05-19T20:33:02.6194015Z Building dependency tree... 2021-05-19T20:33:02.6211228Z Reading state information... 2021-05-19T20:33:02.8687265Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-19T20:33:02.8693701Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:02.8716659Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-19T20:33:03.0004356Z 2021-05-19T20:33:03.0174529Z Reading package lists... 0% 2021-05-19T20:33:03.0175005Z 2021-05-19T20:33:03.0226359Z Reading package lists... 100% 2021-05-19T20:33:03.0226795Z 2021-05-19T20:33:03.0227047Z 2021-05-19T20:33:03.0227544Z Reading package lists... Done 2021-05-19T20:33:03.0227914Z 2021-05-19T20:33:03.0228437Z Building dependency tree... 0% 2021-05-19T20:33:03.0228821Z 2021-05-19T20:33:03.0494820Z Building dependency tree... 0% 2021-05-19T20:33:03.0495405Z 2021-05-19T20:33:03.0496203Z Building dependency tree... 50% 2021-05-19T20:33:03.0496737Z 2021-05-19T20:33:03.1744709Z Building dependency tree... 50% 2021-05-19T20:33:03.1745461Z 2021-05-19T20:33:03.1746468Z Building dependency tree 2021-05-19T20:33:03.1747139Z 2021-05-19T20:33:03.1748064Z Reading state information... 0% 2021-05-19T20:33:03.1748746Z 2021-05-19T20:33:03.3446263Z Reading state information... 0% 2021-05-19T20:33:03.3446777Z 2021-05-19T20:33:03.3447027Z 2021-05-19T20:33:03.3447571Z Reading state information... Done 2021-05-19T20:33:03.3447983Z 2021-05-19T20:33:03.3448521Z Reading state information... 0% 2021-05-19T20:33:03.3509220Z 2021-05-19T20:33:03.3554414Z Reading state information... 1% 2021-05-19T20:33:03.3554959Z 2021-05-19T20:33:03.3555530Z Reading state information... 3% 2021-05-19T20:33:03.3601047Z 2021-05-19T20:33:03.3601629Z Reading state information... 5% 2021-05-19T20:33:03.3649704Z 2021-05-19T20:33:03.3650272Z Reading state information... 7% 2021-05-19T20:33:03.3691995Z 2021-05-19T20:33:03.3692635Z Reading state information... 9% 2021-05-19T20:33:04.1718399Z 2021-05-19T20:33:04.1719085Z Reading state information... 11% 2021-05-19T20:33:04.1719640Z 2021-05-19T20:33:04.1720171Z Reading state information... 13% 2021-05-19T20:33:04.1720659Z 2021-05-19T20:33:04.1721192Z Reading state information... 15% 2021-05-19T20:33:04.1721672Z 2021-05-19T20:33:04.1722200Z Reading state information... 17% 2021-05-19T20:33:04.1722674Z 2021-05-19T20:33:04.1723196Z Reading state information... 19% 2021-05-19T20:33:04.1723674Z 2021-05-19T20:33:04.1724191Z Reading state information... 21% 2021-05-19T20:33:04.1724676Z 2021-05-19T20:33:04.1725192Z Reading state information... 23% 2021-05-19T20:33:04.1725673Z 2021-05-19T20:33:04.1726201Z Reading state information... 25% 2021-05-19T20:33:04.1726669Z 2021-05-19T20:33:04.1727194Z Reading state information... 27% 2021-05-19T20:33:04.1727666Z 2021-05-19T20:33:04.1728189Z Reading state information... 29% 2021-05-19T20:33:04.1728670Z 2021-05-19T20:33:04.1729181Z Reading state information... 31% 2021-05-19T20:33:04.1729663Z 2021-05-19T20:33:04.1730431Z Reading state information... 33% 2021-05-19T20:33:04.1730924Z 2021-05-19T20:33:04.1731449Z Reading state information... 35% 2021-05-19T20:33:04.1731911Z 2021-05-19T20:33:04.1732442Z Reading state information... 37% 2021-05-19T20:33:04.1733016Z 2021-05-19T20:33:04.1733539Z Reading state information... 39% 2021-05-19T20:33:04.1734025Z 2021-05-19T20:33:04.1734538Z Reading state information... 41% 2021-05-19T20:33:04.1735019Z 2021-05-19T20:33:04.1735534Z Reading state information... 43% 2021-05-19T20:33:04.1736008Z 2021-05-19T20:33:04.1736537Z Reading state information... 45% 2021-05-19T20:33:04.1737000Z 2021-05-19T20:33:04.1737531Z Reading state information... 47% 2021-05-19T20:33:04.1738001Z 2021-05-19T20:33:04.1738527Z Reading state information... 49% 2021-05-19T20:33:04.1739003Z 2021-05-19T20:33:04.1739518Z Reading state information... 51% 2021-05-19T20:33:04.1740221Z 2021-05-19T20:33:04.1740742Z Reading state information... 53% 2021-05-19T20:33:04.1741222Z 2021-05-19T20:33:04.1741753Z Reading state information... 55% 2021-05-19T20:33:04.1742217Z 2021-05-19T20:33:04.1742745Z Reading state information... 57% 2021-05-19T20:33:04.1743216Z 2021-05-19T20:33:04.1743825Z Reading state information... 59% 2021-05-19T20:33:04.1744278Z 2021-05-19T20:33:04.1744752Z Reading state information... 61% 2021-05-19T20:33:04.1745201Z 2021-05-19T20:33:04.1745679Z Reading state information... 63% 2021-05-19T20:33:04.1746122Z 2021-05-19T20:33:04.1746612Z Reading state information... 65% 2021-05-19T20:33:04.1747041Z 2021-05-19T20:33:04.1747526Z Reading state information... 67% 2021-05-19T20:33:04.1747962Z 2021-05-19T20:33:04.1748455Z Reading state information... 69% 2021-05-19T20:33:04.1748906Z 2021-05-19T20:33:04.1749382Z Reading state information... 71% 2021-05-19T20:33:04.1749833Z 2021-05-19T20:33:04.1750314Z Reading state information... 73% 2021-05-19T20:33:04.1750764Z 2021-05-19T20:33:04.1751256Z Reading state information... 75% 2021-05-19T20:33:04.1751687Z 2021-05-19T20:33:04.1752184Z Reading state information... 77% 2021-05-19T20:33:04.1752679Z 2021-05-19T20:33:04.1753159Z Reading state information... 79% 2021-05-19T20:33:04.1753612Z 2021-05-19T20:33:04.1754089Z Reading state information... 81% 2021-05-19T20:33:04.1754545Z 2021-05-19T20:33:04.1755042Z Reading state information... 83% 2021-05-19T20:33:04.1755473Z 2021-05-19T20:33:04.1755968Z Reading state information... 85% 2021-05-19T20:33:04.1756404Z 2021-05-19T20:33:04.1756899Z Reading state information... 87% 2021-05-19T20:33:04.1757357Z 2021-05-19T20:33:04.1757837Z Reading state information... 89% 2021-05-19T20:33:04.1758287Z 2021-05-19T20:33:04.1758765Z Reading state information... 91% 2021-05-19T20:33:04.1759214Z 2021-05-19T20:33:04.1759710Z Reading state information... 93% 2021-05-19T20:33:04.1760142Z 2021-05-19T20:33:04.1760638Z Reading state information... 95% 2021-05-19T20:33:04.1761075Z 2021-05-19T20:33:04.1761568Z Reading state information... 97% 2021-05-19T20:33:04.1762019Z 2021-05-19T20:33:04.1762502Z Reading state information... 99% 2021-05-19T20:33:04.1763259Z Selecting previously unselected package pandoc. 2021-05-19T20:33:04.1764189Z (Reading database ... 235970 files and directories currently installed.) 2021-05-19T20:33:04.1765703Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-19T20:33:04.1766555Z Unpacking pandoc (2.7.3-1) ... 2021-05-19T20:33:06.2332929Z Setting up pandoc (2.7.3-1) ... 2021-05-19T20:33:06.2368874Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:07.0026604Z 2021-05-19T20:33:07.0027576Z 2021-05-19T20:33:07.0028399Z Reading state information... Done 2021-05-19T20:33:07.0383436Z ##[group]Run git config user.name adigherman 2021-05-19T20:33:07.0384200Z git config user.name adigherman 2021-05-19T20:33:07.0384856Z git config user.email adig@jhu.edu 2021-05-19T20:33:07.0429258Z shell: /usr/bin/bash -e {0} 2021-05-19T20:33:07.0429714Z env: 2021-05-19T20:33:07.0430244Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:33:07.0430797Z TIC_DEPLOY_KEY: 2021-05-19T20:33:07.0431722Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:33:07.0433679Z GITHUB_PAT: *** 2021-05-19T20:33:07.0434777Z COVERALLS_TOKEN: *** 2021-05-19T20:33:07.0435495Z continue-on-error: false 2021-05-19T20:33:07.0436053Z VDIFFR_RUN_TESTS: 2021-05-19T20:33:07.0436620Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:33:07.0437127Z TZ: UTC 2021-05-19T20:33:07.0437584Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:33:07.0438055Z NOT_CRAN: true 2021-05-19T20:33:07.0438531Z ##[endgroup] 2021-05-19T20:33:07.0739154Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-19T20:33:07.0740097Z env: 2021-05-19T20:33:07.0740609Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:33:07.0741143Z TIC_DEPLOY_KEY: 2021-05-19T20:33:07.0742038Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:33:07.0743967Z GITHUB_PAT: *** 2021-05-19T20:33:07.0744876Z COVERALLS_TOKEN: *** 2021-05-19T20:33:07.0745425Z continue-on-error: false 2021-05-19T20:33:07.0745960Z VDIFFR_RUN_TESTS: 2021-05-19T20:33:07.0746506Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:33:07.0746997Z TZ: UTC 2021-05-19T20:33:07.0747449Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:33:07.0747903Z NOT_CRAN: true 2021-05-19T20:33:07.0748323Z ##[endgroup] 2021-05-19T20:33:07.3655412Z Reading package lists... 2021-05-19T20:33:07.5284106Z Building dependency tree... 2021-05-19T20:33:07.5302325Z Reading state information... 2021-05-19T20:33:07.6730181Z The following additional packages will be installed: 2021-05-19T20:33:07.6735448Z cmake-data libjsoncpp1 librhash0 2021-05-19T20:33:07.6742013Z Suggested packages: 2021-05-19T20:33:07.6742919Z cmake-doc ninja-build 2021-05-19T20:33:07.7247711Z The following NEW packages will be installed: 2021-05-19T20:33:07.7253758Z cmake cmake-data libjsoncpp1 librhash0 2021-05-19T20:33:07.7521423Z 0 upgraded, 4 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:07.7522320Z Need to get 5470 kB of archives. 2021-05-19T20:33:07.7523138Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-19T20:33:07.7525056Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-19T20:33:07.8014886Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-19T20:33:07.8031773Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-19T20:33:07.8049584Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-19T20:33:08.2856460Z Fetched 5470 kB in 0s (42.8 MB/s) 2021-05-19T20:33:08.3286164Z Selecting previously unselected package cmake-data. 2021-05-19T20:33:08.3362659Z (Reading database ... 2021-05-19T20:33:08.3363262Z (Reading database ... 5% 2021-05-19T20:33:08.3363848Z (Reading database ... 10% 2021-05-19T20:33:08.3364354Z (Reading database ... 15% 2021-05-19T20:33:08.3365056Z (Reading database ... 20% 2021-05-19T20:33:08.3365604Z (Reading database ... 25% 2021-05-19T20:33:08.3366140Z (Reading database ... 30% 2021-05-19T20:33:08.3366685Z (Reading database ... 35% 2021-05-19T20:33:08.3367245Z (Reading database ... 40% 2021-05-19T20:33:08.3367789Z (Reading database ... 45% 2021-05-19T20:33:08.3368329Z (Reading database ... 50% 2021-05-19T20:33:08.3460335Z (Reading database ... 55% 2021-05-19T20:33:08.3511484Z (Reading database ... 60% 2021-05-19T20:33:08.3541985Z (Reading database ... 65% 2021-05-19T20:33:08.3610916Z (Reading database ... 70% 2021-05-19T20:33:08.3637881Z (Reading database ... 75% 2021-05-19T20:33:08.3678273Z (Reading database ... 80% 2021-05-19T20:33:08.4018071Z (Reading database ... 85% 2021-05-19T20:33:08.4113199Z (Reading database ... 90% 2021-05-19T20:33:08.4508147Z (Reading database ... 95% 2021-05-19T20:33:08.4509138Z (Reading database ... 100% 2021-05-19T20:33:08.4510540Z (Reading database ... 235977 files and directories currently installed.) 2021-05-19T20:33:08.4604842Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-19T20:33:08.4888983Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-19T20:33:08.9582127Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-19T20:33:08.9802542Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-19T20:33:08.9826153Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-19T20:33:09.0164072Z Selecting previously unselected package librhash0:amd64. 2021-05-19T20:33:09.0411859Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-19T20:33:09.0424442Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-19T20:33:09.0778931Z Selecting previously unselected package cmake. 2021-05-19T20:33:09.1031273Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-19T20:33:09.1043872Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-19T20:33:09.5579422Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-19T20:33:09.5612332Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-19T20:33:09.6057374Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-19T20:33:09.6087060Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-19T20:33:09.6123186Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:10.7472840Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:12.6837358Z Reading package lists... 2021-05-19T20:33:12.8555714Z Building dependency tree... 2021-05-19T20:33:12.8575216Z Reading state information... 2021-05-19T20:33:13.0196768Z Suggested packages: 2021-05-19T20:33:13.0197939Z libssh-doc 2021-05-19T20:33:13.0687761Z The following NEW packages will be installed: 2021-05-19T20:33:13.0692839Z libssh-dev 2021-05-19T20:33:13.0942707Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:13.0943680Z Need to get 219 kB of archives. 2021-05-19T20:33:13.0944505Z After this operation, 1127 kB of additional disk space will be used. 2021-05-19T20:33:13.0946597Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-19T20:33:13.5371659Z Fetched 219 kB in 0s (7248 kB/s) 2021-05-19T20:33:13.5686318Z Selecting previously unselected package libssh-dev:amd64. 2021-05-19T20:33:13.5759121Z (Reading database ... 2021-05-19T20:33:13.5760060Z (Reading database ... 5% 2021-05-19T20:33:13.5760828Z (Reading database ... 10% 2021-05-19T20:33:13.5761561Z (Reading database ... 15% 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and directories currently installed.) 2021-05-19T20:33:13.6899520Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-19T20:33:13.6915195Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-19T20:33:13.7789562Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-19T20:33:16.1741423Z Reading package lists... 2021-05-19T20:33:16.1742757Z Building dependency tree... 2021-05-19T20:33:16.1743933Z Reading state information... 2021-05-19T20:33:16.1745241Z The following NEW packages will be installed: 2021-05-19T20:33:16.1746226Z jags 2021-05-19T20:33:16.1747472Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:16.1748766Z Need to get 1562 kB of archives. 2021-05-19T20:33:16.1750169Z After this operation, 3615 kB of additional disk space will be used. 2021-05-19T20:33:16.1753602Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-19T20:33:16.5695131Z Fetched 1562 kB in 0s (19.7 MB/s) 2021-05-19T20:33:16.6003079Z Selecting previously unselected package jags. 2021-05-19T20:33:16.6074727Z (Reading database ... 2021-05-19T20:33:16.6075549Z (Reading database ... 5% 2021-05-19T20:33:16.6076650Z (Reading database ... 10% 2021-05-19T20:33:16.6077200Z (Reading database ... 15% 2021-05-19T20:33:16.6077747Z (Reading database ... 20% 2021-05-19T20:33:16.6078276Z (Reading database ... 25% 2021-05-19T20:33:16.6078823Z (Reading database ... 30% 2021-05-19T20:33:16.6079596Z (Reading database ... 35% 2021-05-19T20:33:16.6080146Z (Reading database ... 40% 2021-05-19T20:33:16.6080789Z (Reading database ... 45% 2021-05-19T20:33:16.6081338Z (Reading database ... 50% 2021-05-19T20:33:16.6161052Z (Reading database ... 55% 2021-05-19T20:33:16.6207098Z (Reading database ... 60% 2021-05-19T20:33:16.6236359Z (Reading database ... 65% 2021-05-19T20:33:16.6294153Z (Reading database ... 70% 2021-05-19T20:33:16.6320322Z (Reading database ... 75% 2021-05-19T20:33:16.6349982Z (Reading database ... 80% 2021-05-19T20:33:16.6649284Z (Reading database ... 85% 2021-05-19T20:33:16.6733337Z (Reading database ... 90% 2021-05-19T20:33:16.7082591Z (Reading database ... 95% 2021-05-19T20:33:16.7083147Z (Reading database ... 100% 2021-05-19T20:33:16.7083980Z (Reading database ... 238780 files and directories currently installed.) 2021-05-19T20:33:16.7173367Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-19T20:33:16.7196298Z Unpacking jags (4.3.0-3build1) ... 2021-05-19T20:33:16.8907717Z Setting up jags (4.3.0-3build1) ... 2021-05-19T20:33:16.9023655Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:17.6259996Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:19.5815173Z Reading package lists... 2021-05-19T20:33:19.7341581Z Building dependency tree... 2021-05-19T20:33:19.7361400Z Reading state information... 2021-05-19T20:33:19.8976749Z The following additional packages will be installed: 2021-05-19T20:33:19.8982182Z libnode64 libuv1-dev 2021-05-19T20:33:19.9496950Z The following NEW packages will be installed: 2021-05-19T20:33:19.9500530Z libnode-dev libnode64 libuv1-dev 2021-05-19T20:33:19.9790083Z 0 upgraded, 3 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:19.9790912Z Need to get 6239 kB of archives. 2021-05-19T20:33:19.9791747Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-19T20:33:19.9793764Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-19T20:33:19.9862300Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-19T20:33:20.0738471Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-19T20:33:20.5120727Z Fetched 6239 kB in 0s (51.0 MB/s) 2021-05-19T20:33:20.5541676Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-19T20:33:20.5559099Z (Reading database ... 2021-05-19T20:33:20.5559728Z (Reading database ... 5% 2021-05-19T20:33:20.5560286Z (Reading database ... 10% 2021-05-19T20:33:20.5560824Z (Reading database ... 15% 2021-05-19T20:33:20.5561404Z (Reading database ... 20% 2021-05-19T20:33:20.5561958Z (Reading database ... 25% 2021-05-19T20:33:20.5562493Z (Reading database ... 30% 2021-05-19T20:33:20.5563038Z (Reading database ... 35% 2021-05-19T20:33:20.5563571Z (Reading database ... 40% 2021-05-19T20:33:20.5564116Z (Reading database ... 45% 2021-05-19T20:33:20.5564661Z (Reading database ... 50% 2021-05-19T20:33:20.5666357Z (Reading database ... 55% 2021-05-19T20:33:20.5717557Z (Reading database ... 60% 2021-05-19T20:33:20.5750588Z (Reading database ... 65% 2021-05-19T20:33:20.5819210Z (Reading database ... 70% 2021-05-19T20:33:20.5849284Z (Reading database ... 75% 2021-05-19T20:33:20.5885761Z (Reading database ... 80% 2021-05-19T20:33:20.6212918Z (Reading database ... 85% 2021-05-19T20:33:20.6320574Z (Reading database ... 90% 2021-05-19T20:33:20.6711158Z (Reading database ... 95% 2021-05-19T20:33:20.6712812Z (Reading database ... 100% 2021-05-19T20:33:20.6714668Z (Reading database ... 238920 files and directories currently installed.) 2021-05-19T20:33:20.6810042Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-19T20:33:20.6824169Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-19T20:33:20.7176942Z Selecting previously unselected package libnode64:amd64. 2021-05-19T20:33:20.7433064Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:33:20.7453061Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:33:21.4267723Z Selecting previously unselected package libnode-dev:amd64. 2021-05-19T20:33:21.4520679Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:33:21.4538708Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:33:21.5547236Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-19T20:33:21.5581190Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:33:21.5612431Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:33:21.5653216Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:23.5077201Z Reading package lists... 2021-05-19T20:33:23.6648410Z Building dependency tree... 2021-05-19T20:33:23.6666964Z Reading state information... 2021-05-19T20:33:23.8187294Z The following additional packages will be installed: 2021-05-19T20:33:23.8197009Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-19T20:33:23.8198516Z Suggested packages: 2021-05-19T20:33:23.8199750Z libfftw3-doc 2021-05-19T20:33:23.8721816Z The following NEW packages will be installed: 2021-05-19T20:33:23.8727697Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-19T20:33:23.8961279Z 0 upgraded, 5 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:23.8962117Z Need to get 3986 kB of archives. 2021-05-19T20:33:23.8962890Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-19T20:33:23.8964795Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-19T20:33:23.9118042Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-19T20:33:23.9281190Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-19T20:33:23.9446431Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-19T20:33:23.9454224Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-19T20:33:24.4123762Z Fetched 3986 kB in 0s (36.4 MB/s) 2021-05-19T20:33:24.4438697Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-19T20:33:24.4513016Z (Reading database ... 2021-05-19T20:33:24.4513661Z (Reading database ... 5% 2021-05-19T20:33:24.4514208Z (Reading database ... 10% 2021-05-19T20:33:24.4514762Z (Reading database ... 15% 2021-05-19T20:33:24.4515294Z (Reading database ... 20% 2021-05-19T20:33:24.4515859Z (Reading database ... 25% 2021-05-19T20:33:24.4516401Z (Reading database ... 30% 2021-05-19T20:33:24.4516933Z (Reading database ... 35% 2021-05-19T20:33:24.4517473Z (Reading database ... 40% 2021-05-19T20:33:24.4518018Z (Reading database ... 45% 2021-05-19T20:33:24.4518544Z (Reading database ... 50% 2021-05-19T20:33:24.4595801Z (Reading database ... 55% 2021-05-19T20:33:24.4642074Z (Reading database ... 60% 2021-05-19T20:33:24.4670671Z (Reading database ... 65% 2021-05-19T20:33:24.4732844Z (Reading database ... 70% 2021-05-19T20:33:24.4758365Z (Reading database ... 75% 2021-05-19T20:33:24.4789793Z (Reading database ... 80% 2021-05-19T20:33:24.5112714Z (Reading database ... 85% 2021-05-19T20:33:24.5229535Z (Reading database ... 90% 2021-05-19T20:33:24.5600955Z (Reading database ... 95% 2021-05-19T20:33:24.5602022Z (Reading database ... 100% 2021-05-19T20:33:24.5603515Z (Reading database ... 239056 files and directories currently installed.) 2021-05-19T20:33:24.5689131Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:24.5716564Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:24.6296672Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-19T20:33:24.6550587Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:24.6561051Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:24.7541949Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-19T20:33:24.7745637Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:24.7756051Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:24.8755961Z Selecting previously unselected package libfftw3-bin. 2021-05-19T20:33:24.9012859Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:24.9022846Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-19T20:33:24.9341529Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-19T20:33:24.9538211Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:24.9548059Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2561700Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2588649Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2612986Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2641621Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2679411Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:25.2724800Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:26.0748255Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:28.0401014Z Reading package lists... 2021-05-19T20:33:28.1926028Z Building dependency tree... 2021-05-19T20:33:28.1946221Z Reading state information... 2021-05-19T20:33:28.3550791Z The following additional packages will be installed: 2021-05-19T20:33:28.3551834Z libdcmtk14 2021-05-19T20:33:28.4117061Z The following NEW packages will be installed: 2021-05-19T20:33:28.4125061Z dcmtk libdcmtk14 2021-05-19T20:33:28.4392606Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:28.4393434Z Need to get 5546 kB of archives. 2021-05-19T20:33:28.4394206Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-19T20:33:28.4396099Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-19T20:33:28.5429280Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-19T20:33:28.9740437Z Fetched 5546 kB in 0s (40.0 MB/s) 2021-05-19T20:33:29.1255993Z Selecting previously unselected package libdcmtk14. 2021-05-19T20:33:29.1343260Z (Reading database ... 2021-05-19T20:33:29.1344155Z (Reading database ... 5% 2021-05-19T20:33:29.1345098Z (Reading database ... 10% 2021-05-19T20:33:29.1345829Z (Reading database ... 15% 2021-05-19T20:33:29.1346562Z (Reading database ... 20% 2021-05-19T20:33:29.1347328Z (Reading database ... 25% 2021-05-19T20:33:29.1348046Z (Reading database ... 30% 2021-05-19T20:33:29.1348888Z (Reading database ... 35% 2021-05-19T20:33:29.1349569Z (Reading database ... 40% 2021-05-19T20:33:29.1350229Z (Reading database ... 45% 2021-05-19T20:33:29.1350911Z (Reading database ... 50% 2021-05-19T20:33:29.1445643Z (Reading database ... 55% 2021-05-19T20:33:29.1495065Z (Reading database ... 60% 2021-05-19T20:33:29.1529658Z (Reading database ... 65% 2021-05-19T20:33:29.1594090Z (Reading database ... 70% 2021-05-19T20:33:29.1620815Z (Reading database ... 75% 2021-05-19T20:33:29.1653812Z (Reading database ... 80% 2021-05-19T20:33:29.1941182Z (Reading database ... 85% 2021-05-19T20:33:29.2046396Z (Reading database ... 90% 2021-05-19T20:33:29.2393680Z (Reading database ... 95% 2021-05-19T20:33:29.2394722Z (Reading database ... 100% 2021-05-19T20:33:29.2396225Z (Reading database ... 239147 files and directories currently installed.) 2021-05-19T20:33:29.2484447Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-19T20:33:29.2509389Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-19T20:33:29.7901886Z Selecting previously unselected package dcmtk. 2021-05-19T20:33:29.8121485Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-19T20:33:29.8175756Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-19T20:33:29.9752925Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-19T20:33:29.9785385Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-19T20:33:29.9930381Z Adding `dcmtk' group to system ... 2021-05-19T20:33:30.0885210Z Adding `dcmtk' user to system ... 2021-05-19T20:33:30.2735844Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-19T20:33:30.5579176Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:32.2224614Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:34.1821584Z Reading package lists... 2021-05-19T20:33:34.3428380Z Building dependency tree... 2021-05-19T20:33:34.3447623Z Reading state information... 2021-05-19T20:33:34.5999671Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-19T20:33:34.6000953Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:34.6701792Z Reading package lists... 2021-05-19T20:33:34.8293953Z Building dependency tree... 2021-05-19T20:33:34.8314195Z Reading state information... 2021-05-19T20:33:35.0952520Z libpng-dev is already the newest version (1.6.37-2). 2021-05-19T20:33:35.0953894Z libpng-dev set to manually installed. 2021-05-19T20:33:35.0956347Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:35.1643037Z Reading package lists... 2021-05-19T20:33:35.3196032Z Building dependency tree... 2021-05-19T20:33:35.3214189Z Reading state information... 2021-05-19T20:33:35.4795530Z The following additional packages will be installed: 2021-05-19T20:33:35.4797475Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-19T20:33:35.4801561Z Suggested packages: 2021-05-19T20:33:35.4802957Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-19T20:33:35.4804637Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-19T20:33:35.4805893Z fonts-arphic-uming fonts-nanum 2021-05-19T20:33:35.5309962Z The following NEW packages will be installed: 2021-05-19T20:33:35.5312017Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-19T20:33:35.5315024Z libpoppler97 poppler-data 2021-05-19T20:33:35.5737725Z 0 upgraded, 6 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:35.5738569Z Need to get 2582 kB of archives. 2021-05-19T20:33:35.5739419Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-19T20:33:35.5741594Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-19T20:33:35.6117564Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-19T20:33:35.6144522Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-19T20:33:35.6295520Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-19T20:33:35.6301965Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-19T20:33:35.6309578Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-19T20:33:36.0792303Z Fetched 2582 kB in 0s (27.2 MB/s) 2021-05-19T20:33:36.1124078Z Selecting previously unselected package poppler-data. 2021-05-19T20:33:36.1197001Z (Reading database ... 2021-05-19T20:33:36.1197594Z (Reading database ... 5% 2021-05-19T20:33:36.1198112Z (Reading database ... 10% 2021-05-19T20:33:36.1198617Z (Reading database ... 15% 2021-05-19T20:33:36.1199133Z (Reading database ... 20% 2021-05-19T20:33:36.1199824Z (Reading database ... 25% 2021-05-19T20:33:36.1200334Z (Reading database ... 30% 2021-05-19T20:33:36.1200842Z (Reading database ... 35% 2021-05-19T20:33:36.1201333Z (Reading database ... 40% 2021-05-19T20:33:36.1201838Z (Reading database ... 45% 2021-05-19T20:33:36.1202331Z (Reading database ... 50% 2021-05-19T20:33:36.1294619Z (Reading database ... 55% 2021-05-19T20:33:36.1342369Z (Reading database ... 60% 2021-05-19T20:33:36.1368929Z (Reading database ... 65% 2021-05-19T20:33:36.1434183Z (Reading database ... 70% 2021-05-19T20:33:36.1457748Z (Reading database ... 75% 2021-05-19T20:33:36.1490924Z (Reading database ... 80% 2021-05-19T20:33:36.1773110Z (Reading database ... 85% 2021-05-19T20:33:36.1872062Z (Reading database ... 90% 2021-05-19T20:33:36.2258166Z (Reading database ... 95% 2021-05-19T20:33:36.2259349Z (Reading database ... 100% 2021-05-19T20:33:36.2261244Z (Reading database ... 239382 files and directories currently installed.) 2021-05-19T20:33:36.2352850Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-19T20:33:36.2365570Z Unpacking poppler-data (0.4.9-2) ... 2021-05-19T20:33:36.4933909Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-19T20:33:36.5202162Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-19T20:33:36.5229326Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-19T20:33:36.5663112Z Selecting previously unselected package libpoppler97:amd64. 2021-05-19T20:33:36.5921524Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:36.5932732Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.7222466Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-19T20:33:36.7428105Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:36.7444289Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.7765384Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-19T20:33:36.7990067Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:36.8004457Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.8341793Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-19T20:33:36.8550814Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:36.8565524Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.9187342Z Setting up poppler-data (0.4.9-2) ... 2021-05-19T20:33:36.9286452Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-19T20:33:36.9317795Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.9347946Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.9375973Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.9409985Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:36.9447359Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:33:37.0241415Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:38.9621240Z Reading package lists... 2021-05-19T20:33:39.1223963Z Building dependency tree... 2021-05-19T20:33:39.1242814Z Reading state information... 2021-05-19T20:33:39.2838642Z The following additional packages will be installed: 2021-05-19T20:33:39.2842964Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-19T20:33:39.2849457Z Suggested packages: 2021-05-19T20:33:39.2850588Z libhdf5-doc 2021-05-19T20:33:39.3407002Z The following NEW packages will be installed: 2021-05-19T20:33:39.3412206Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-19T20:33:39.3415474Z libsz2 2021-05-19T20:33:39.3665256Z 0 upgraded, 7 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:39.3666114Z Need to get 4074 kB of archives. 2021-05-19T20:33:39.3666934Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-19T20:33:39.3669341Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-19T20:33:39.3700848Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-19T20:33:39.3708061Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-19T20:33:39.3714295Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-19T20:33:39.4071147Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-19T20:33:39.4083983Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-19T20:33:39.4091256Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-19T20:33:39.8943102Z Fetched 4074 kB in 0s (36.6 MB/s) 2021-05-19T20:33:39.9279603Z Selecting previously unselected package hdf5-helpers. 2021-05-19T20:33:39.9356642Z (Reading database ... 2021-05-19T20:33:39.9357545Z (Reading database ... 5% 2021-05-19T20:33:39.9358609Z (Reading database ... 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2021-05-19T20:33:40.0463722Z (Reading database ... 239942 files and directories currently installed.) 2021-05-19T20:33:40.0554012Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:40.0568087Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.0901002Z Selecting previously unselected package libaec0:amd64. 2021-05-19T20:33:40.1106132Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-19T20:33:40.1125054Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.1420948Z Selecting previously unselected package libsz2:amd64. 2021-05-19T20:33:40.1619318Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-19T20:33:40.1635312Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.1943499Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-19T20:33:40.2151625Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:40.2166956Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.3822557Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-19T20:33:40.4032677Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:40.4051050Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.4541796Z Selecting previously unselected package libaec-dev:amd64. 2021-05-19T20:33:40.4758339Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-19T20:33:40.4768429Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.5054807Z Selecting previously unselected package libhdf5-dev. 2021-05-19T20:33:40.5308194Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:40.5319196Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.9013782Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.9056918Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.9089769Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.9117281Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-19T20:33:40.9148112Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.9181086Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.9215884Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:40.9301221Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-19T20:33:40.9330878Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:41.7129613Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:43.6673920Z Reading package lists... 2021-05-19T20:33:43.8273677Z Building dependency tree... 2021-05-19T20:33:43.8294420Z Reading state information... 2021-05-19T20:33:43.9936334Z The following additional packages will be installed: 2021-05-19T20:33:43.9939452Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-19T20:33:44.0481922Z The following NEW packages will be installed: 2021-05-19T20:33:44.0484641Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-19T20:33:44.0485973Z mesa-common-dev 2021-05-19T20:33:44.0733011Z 0 upgraded, 6 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:44.0734070Z Need to get 1761 kB of archives. 2021-05-19T20:33:44.0734994Z After this operation, 5442 kB of additional disk space will be used. 2021-05-19T20:33:44.0737179Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-19T20:33:44.0812330Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-19T20:33:44.0818347Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-19T20:33:44.0853547Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-19T20:33:44.0903980Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-19T20:33:44.0962097Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-19T20:33:44.5511168Z Fetched 1761 kB in 0s (25.8 MB/s) 2021-05-19T20:33:44.5841265Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-19T20:33:44.5920603Z (Reading database ... 2021-05-19T20:33:44.5921616Z (Reading database ... 5% 2021-05-19T20:33:44.5922339Z (Reading database ... 10% 2021-05-19T20:33:44.5923023Z (Reading database ... 15% 2021-05-19T20:33:44.5923729Z (Reading database ... 20% 2021-05-19T20:33:44.5924421Z (Reading database ... 25% 2021-05-19T20:33:44.5925162Z (Reading database ... 30% 2021-05-19T20:33:44.5925851Z (Reading database ... 35% 2021-05-19T20:33:44.5926530Z (Reading database ... 40% 2021-05-19T20:33:44.5927197Z (Reading database ... 45% 2021-05-19T20:33:44.5927876Z (Reading database ... 50% 2021-05-19T20:33:44.6031470Z (Reading database ... 55% 2021-05-19T20:33:44.6087320Z (Reading database ... 60% 2021-05-19T20:33:44.6130232Z (Reading database ... 65% 2021-05-19T20:33:44.6206291Z (Reading database ... 70% 2021-05-19T20:33:44.6232350Z (Reading database ... 75% 2021-05-19T20:33:44.6267088Z (Reading database ... 80% 2021-05-19T20:33:44.6583692Z (Reading database ... 85% 2021-05-19T20:33:44.6701826Z (Reading database ... 90% 2021-05-19T20:33:44.7074807Z (Reading database ... 95% 2021-05-19T20:33:44.7075884Z (Reading database ... 100% 2021-05-19T20:33:44.7077376Z (Reading database ... 240150 files and directories currently installed.) 2021-05-19T20:33:44.7160619Z Preparing to unpack .../0-libdrm-dev_2.4.102-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:33:44.7174830Z Unpacking libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-19T20:33:44.7622103Z Selecting previously unselected package libglx-dev:amd64. 2021-05-19T20:33:44.7817954Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:44.7829787Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:44.8143059Z Selecting previously unselected package libgl-dev:amd64. 2021-05-19T20:33:44.8345884Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:44.8358323Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:44.8821612Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-19T20:33:44.8984634Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-19T20:33:44.9010260Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:44.9502039Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-19T20:33:44.9673125Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-19T20:33:44.9685707Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:45.0144689Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-19T20:33:45.0395177Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:45.0413140Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:33:45.2148477Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-19T20:33:45.2192422Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:45.2242660Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:45.2283140Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:45.2314631Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:45.2355624Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:33:45.2401842Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:46.7347701Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:48.6537594Z Reading package lists... 2021-05-19T20:33:48.8061854Z Building dependency tree... 2021-05-19T20:33:48.8081788Z Reading state information... 2021-05-19T20:33:48.9718726Z The following additional packages will be installed: 2021-05-19T20:33:48.9720194Z libprotobuf-lite17 libprotoc17 2021-05-19T20:33:49.0218857Z The following NEW packages will be installed: 2021-05-19T20:33:49.0221640Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-19T20:33:49.0222986Z protobuf-compiler 2021-05-19T20:33:49.0498772Z 0 upgraded, 5 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:49.0500591Z Need to get 2754 kB of archives. 2021-05-19T20:33:49.0502014Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-19T20:33:49.0505039Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-19T20:33:49.0579382Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-19T20:33:49.0761456Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-19T20:33:49.0926954Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-19T20:33:49.1038897Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-19T20:33:49.5449105Z Fetched 2754 kB in 0s (35.5 MB/s) 2021-05-19T20:33:49.5812290Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-19T20:33:49.5889785Z (Reading database ... 2021-05-19T20:33:49.5890424Z (Reading database ... 5% 2021-05-19T20:33:49.5892657Z (Reading database ... 10% 2021-05-19T20:33:49.5893216Z (Reading database ... 15% 2021-05-19T20:33:49.5893770Z (Reading 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2021-05-19T20:33:49.7044674Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:49.7062594Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:49.7502101Z Selecting previously unselected package libprotoc17:amd64. 2021-05-19T20:33:49.7694545Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:49.7709967Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:49.8782589Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-19T20:33:49.8995542Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:49.9014441Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.0676353Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-19T20:33:50.0928409Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:50.0940270Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.2182421Z Selecting previously unselected package protobuf-compiler. 2021-05-19T20:33:50.2408786Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:50.2428098Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3140396Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3177465Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3209414Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3241226Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3270378Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:50.3302194Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:51.0544672Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:52.9816189Z Reading package lists... 2021-05-19T20:33:53.1441350Z Building dependency tree... 2021-05-19T20:33:53.1457763Z Reading state information... 2021-05-19T20:33:53.3025010Z The following additional packages will be installed: 2021-05-19T20:33:53.3028575Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-19T20:33:53.3031554Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-19T20:33:53.3033873Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-19T20:33:53.3036703Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-19T20:33:53.3039505Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-19T20:33:53.3043260Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-19T20:33:53.3045747Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-19T20:33:53.3048681Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-19T20:33:53.3051068Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-19T20:33:53.3053490Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-19T20:33:53.3056173Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-19T20:33:53.3057652Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-19T20:33:53.3058923Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-19T20:33:53.3060646Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-19T20:33:53.3061451Z Suggested packages: 2021-05-19T20:33:53.3062593Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-19T20:33:53.3063965Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-19T20:33:53.3065500Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-19T20:33:53.3066886Z nvidia-legacy-304xx-vdpau-driver 2021-05-19T20:33:53.3831545Z The following NEW packages will be installed: 2021-05-19T20:33:53.3834851Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-19T20:33:53.3837593Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-19T20:33:53.3839992Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-19T20:33:53.3842841Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-19T20:33:53.3845660Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-19T20:33:53.3848429Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-19T20:33:53.3851244Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-19T20:33:53.3853999Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-19T20:33:53.3857772Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-19T20:33:53.3860461Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-19T20:33:53.3863000Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-19T20:33:53.3865316Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-19T20:33:53.3867570Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-19T20:33:53.3869764Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-19T20:33:53.4113684Z 0 upgraded, 76 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:53.4114748Z Need to get 47.1 MB of archives. 2021-05-19T20:33:53.4115699Z After this operation, 195 MB of additional disk space will be used. 2021-05-19T20:33:53.4117881Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-19T20:33:53.4446313Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-19T20:33:53.4455791Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-19T20:33:53.4462340Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-19T20:33:53.4467064Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-19T20:33:53.4474569Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-19T20:33:53.4479802Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-19T20:33:53.4527674Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-19T20:33:53.6750473Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-19T20:33:53.6756449Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-19T20:33:53.6772613Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-19T20:33:53.6796258Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-19T20:33:53.6803267Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-19T20:33:53.6808829Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-19T20:33:53.6816739Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-19T20:33:53.6836434Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-19T20:33:53.6848071Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-19T20:33:53.6878852Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-19T20:33:53.6889818Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-19T20:33:53.6904866Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-19T20:33:53.6920200Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-19T20:33:53.7004944Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-19T20:33:53.7167511Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-19T20:33:53.7194111Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-19T20:33:53.7203721Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-19T20:33:53.7239105Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-19T20:33:53.7917698Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-19T20:33:53.7924147Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-19T20:33:53.7930577Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-19T20:33:53.7959837Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-19T20:33:53.7977952Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-19T20:33:53.8000962Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-19T20:33:53.8007392Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-19T20:33:53.8026737Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-19T20:33:53.8375998Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-19T20:33:53.8438409Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-19T20:33:53.8604064Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-19T20:33:53.8606928Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-19T20:33:54.0630290Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-19T20:33:54.0637477Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-19T20:33:54.0642787Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-19T20:33:54.0649011Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-19T20:33:54.0656905Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-19T20:33:54.0670518Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-19T20:33:54.0716763Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-19T20:33:54.0901463Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-19T20:33:54.0920493Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-19T20:33:54.0963960Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-19T20:33:54.0981341Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-19T20:33:54.1193470Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-19T20:33:54.1276126Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-19T20:33:54.1294443Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-19T20:33:54.1300516Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-19T20:33:54.1307251Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-19T20:33:54.1333043Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-19T20:33:54.1342978Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-19T20:33:54.1388433Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-19T20:33:54.1411238Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-19T20:33:54.1417618Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-19T20:33:54.1482493Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-19T20:33:54.1488086Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-19T20:33:54.1519833Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-19T20:33:54.1539351Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-19T20:33:54.1579277Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-19T20:33:54.1634433Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-19T20:33:54.1648532Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-19T20:33:54.1672671Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-19T20:33:54.1884471Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-19T20:33:54.1912894Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-19T20:33:54.2444650Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-19T20:33:54.2458772Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-19T20:33:54.2463311Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-19T20:33:54.2793378Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-19T20:33:54.3189194Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-19T20:33:54.3319314Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-19T20:33:54.3322160Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-19T20:33:54.9511972Z Fetched 47.1 MB in 1s (50.0 MB/s) 2021-05-19T20:33:54.9866834Z Selecting previously unselected package libaom0:amd64. 2021-05-19T20:33:54.9944542Z (Reading database ... 2021-05-19T20:33:54.9948716Z (Reading database ... 5% 2021-05-19T20:33:54.9949606Z (Reading database ... 10% 2021-05-19T20:33:54.9950366Z (Reading database ... 15% 2021-05-19T20:33:54.9951160Z (Reading database ... 20% 2021-05-19T20:33:54.9951890Z (Reading database ... 25% 2021-05-19T20:33:54.9952636Z (Reading database ... 30% 2021-05-19T20:33:54.9953377Z (Reading database ... 35% 2021-05-19T20:33:54.9954095Z (Reading database ... 40% 2021-05-19T20:33:54.9954828Z (Reading database ... 45% 2021-05-19T20:33:54.9955570Z (Reading database ... 50% 2021-05-19T20:33:55.0048000Z (Reading database ... 55% 2021-05-19T20:33:55.0100142Z (Reading database ... 60% 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previously unselected package libva-drm2:amd64. 2021-05-19T20:33:55.3390377Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-19T20:33:55.3410531Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-19T20:33:55.3670213Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-19T20:33:55.3924739Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-19T20:33:55.3940482Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-19T20:33:55.4261160Z Selecting previously unselected package libvdpau1:amd64. 2021-05-19T20:33:55.4485288Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-19T20:33:55.4499030Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-19T20:33:55.4861962Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-19T20:33:55.5117224Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-19T20:33:55.5127323Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 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libmp3lame0:amd64 (3.100-3) ... 2021-05-19T20:33:56.5500889Z Selecting previously unselected package libopus0:amd64. 2021-05-19T20:33:56.5670662Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:56.5683568Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-19T20:33:56.6215014Z Selecting previously unselected package libshine3:amd64. 2021-05-19T20:33:56.6389754Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-19T20:33:56.6400768Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-19T20:33:56.6701074Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-19T20:33:56.6892416Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-19T20:33:56.6906403Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-19T20:33:56.7181597Z Selecting previously unselected package libspeex1:amd64. 2021-05-19T20:33:56.7402524Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 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(0.2.35-17) ... 2021-05-19T20:33:57.7060707Z Selecting previously unselected package libavcodec58:amd64. 2021-05-19T20:33:57.7258691Z Preparing to unpack .../25-libavcodec58_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-19T20:33:57.7268842Z Unpacking libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:58.2782581Z Selecting previously unselected package libraw1394-11:amd64. 2021-05-19T20:33:58.2982966Z Preparing to unpack .../26-libraw1394-11_2.1.2-1_amd64.deb ... 2021-05-19T20:33:58.2992894Z Unpacking libraw1394-11:amd64 (2.1.2-1) ... 2021-05-19T20:33:58.3287456Z Selecting previously unselected package libavc1394-0:amd64. 2021-05-19T20:33:58.3549479Z Preparing to unpack .../27-libavc1394-0_0.5.4-5_amd64.deb ... 2021-05-19T20:33:58.3562852Z Unpacking libavc1394-0:amd64 (0.5.4-5) ... 2021-05-19T20:33:58.3902053Z Selecting previously unselected package libass9:amd64. 2021-05-19T20:33:58.4085069Z Preparing to unpack .../28-libass9_1%3a0.14.0-2_amd64.deb ... 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2021-05-19T20:34:04.1538512Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:34:04.1571694Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-19T20:34:04.1607148Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-19T20:34:04.1631056Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:34:04.1656339Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:34:04.1685966Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:34:04.1716931Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:34:04.1822124Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:05.2551609Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:07.2156569Z Reading package lists... 2021-05-19T20:34:07.3821494Z Building dependency tree... 2021-05-19T20:34:07.3841034Z Reading state information... 2021-05-19T20:34:07.5346552Z The following additional packages will be installed: 2021-05-19T20:34:07.5350266Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-19T20:34:07.5881069Z The following NEW packages will be installed: 2021-05-19T20:34:07.5883416Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-19T20:34:07.5884834Z libmagick++-dev 2021-05-19T20:34:07.6138743Z 0 upgraded, 4 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:07.6140197Z Need to get 309 kB of archives. 2021-05-19T20:34:07.6141240Z After this operation, 2202 kB of additional disk space will be used. 2021-05-19T20:34:07.6143506Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-19T20:34:07.6198093Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-19T20:34:07.6259194Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-19T20:34:07.6302975Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-19T20:34:08.0620692Z Fetched 309 kB in 0s (8254 kB/s) 2021-05-19T20:34:08.0952327Z Selecting previously unselected package libmagick++-6-headers. 2021-05-19T20:34:08.1027871Z (Reading database ... 2021-05-19T20:34:08.1028762Z (Reading database ... 5% 2021-05-19T20:34:08.1029638Z (Reading database ... 10% 2021-05-19T20:34:08.1030297Z (Reading database ... 15% 2021-05-19T20:34:08.1030918Z (Reading database ... 20% 2021-05-19T20:34:08.1031563Z (Reading database ... 25% 2021-05-19T20:34:08.1032203Z (Reading database ... 30% 2021-05-19T20:34:08.1032822Z (Reading database ... 35% 2021-05-19T20:34:08.1033457Z (Reading database ... 40% 2021-05-19T20:34:08.1034097Z (Reading database ... 45% 2021-05-19T20:34:08.1034710Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-19T20:34:08.2884150Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.3295385Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-19T20:34:08.3558591Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-19T20:34:08.3569933Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.4141763Z Selecting previously unselected package libmagick++-dev. 2021-05-19T20:34:08.4343595Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-19T20:34:08.4427310Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.5001866Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.5103748Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.5125003Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.5153517Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:34:08.5234475Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:10.4772589Z Reading package lists... 2021-05-19T20:34:10.6336632Z Building dependency tree... 2021-05-19T20:34:10.6358496Z Reading state information... 2021-05-19T20:34:10.7879181Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-19T20:34:10.7882113Z The following additional packages will be installed: 2021-05-19T20:34:10.7885231Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-19T20:34:10.7887638Z libijs-0.35 libjbig2dec0 2021-05-19T20:34:10.7890615Z Suggested packages: 2021-05-19T20:34:10.7893040Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-19T20:34:10.7895148Z ghostscript-x 2021-05-19T20:34:10.8470000Z The following NEW packages will be installed: 2021-05-19T20:34:10.8476101Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-19T20:34:10.8485112Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-19T20:34:10.8882472Z 0 upgraded, 8 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:10.8883332Z Need to get 11.2 MB of archives. 2021-05-19T20:34:10.8884270Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-19T20:34:10.8886225Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-19T20:34:10.9386977Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-19T20:34:10.9401262Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-19T20:34:11.0325295Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-19T20:34:11.0425195Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-19T20:34:11.0430973Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-19T20:34:11.0460232Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-19T20:34:11.0874466Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-19T20:34:11.5260682Z Fetched 11.2 MB in 0s (47.7 MB/s) 2021-05-19T20:34:11.5592901Z Selecting previously unselected package fonts-droid-fallback. 2021-05-19T20:34:11.5667718Z (Reading database ... 2021-05-19T20:34:11.5672374Z (Reading database ... 5% 2021-05-19T20:34:11.5672899Z (Reading 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... 100% 2021-05-19T20:34:12.1887699Z (Reading database ... 241390 files and directories currently installed.) 2021-05-19T20:34:12.1889648Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-19T20:34:12.1891079Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-19T20:34:12.1892458Z Selecting previously unselected package fonts-noto-mono. 2021-05-19T20:34:12.1894666Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-19T20:34:12.1896156Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-19T20:34:12.1900161Z Selecting previously unselected package fonts-urw-base35. 2021-05-19T20:34:12.1901546Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-19T20:34:12.1902588Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-19T20:34:12.5075393Z Selecting previously unselected package libgs9-common. 2021-05-19T20:34:12.5314794Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-19T20:34:12.5324637Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:12.6382366Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-19T20:34:12.6645109Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-19T20:34:12.6668511Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-19T20:34:12.6980877Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-19T20:34:12.7179397Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-19T20:34:12.7190927Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-19T20:34:12.7540819Z Selecting previously unselected package libgs9:amd64. 2021-05-19T20:34:12.7745485Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-19T20:34:12.7754803Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:13.0860995Z Selecting previously unselected package ghostscript. 2021-05-19T20:34:13.1092111Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-19T20:34:13.1102680Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:13.1805249Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-19T20:34:13.1844605Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-19T20:34:13.1870773Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-19T20:34:13.2550582Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-19T20:34:13.2586925Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-19T20:34:13.2840362Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:13.2911749Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:13.2945841Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:34:13.3060406Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:34:13.4204165Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:13.4423078Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:16.5001264Z Reading package lists... 2021-05-19T20:34:16.6551418Z Building dependency tree... 2021-05-19T20:34:16.6570801Z Reading state information... 2021-05-19T20:34:16.8060219Z The following additional packages will be installed: 2021-05-19T20:34:16.8062593Z libudunits2-0 libudunits2-data 2021-05-19T20:34:16.8612909Z The following NEW packages will be installed: 2021-05-19T20:34:16.8617893Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-19T20:34:16.8866857Z 0 upgraded, 3 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:16.8867695Z Need to get 429 kB of archives. 2021-05-19T20:34:16.8868528Z After this operation, 1026 kB of additional disk space will be used. 2021-05-19T20:34:16.8870564Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-19T20:34:16.8905110Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-19T20:34:16.8923929Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-19T20:34:17.3307382Z Fetched 429 kB in 0s (12.0 MB/s) 2021-05-19T20:34:17.3646612Z Selecting previously unselected package libudunits2-data. 2021-05-19T20:34:17.3728587Z (Reading database ... 2021-05-19T20:34:17.3729501Z (Reading database ... 5% 2021-05-19T20:34:17.3730265Z (Reading database ... 10% 2021-05-19T20:34:17.3731242Z (Reading database ... 15% 2021-05-19T20:34:17.3732019Z (Reading database ... 20% 2021-05-19T20:34:17.3732761Z (Reading database ... 25% 2021-05-19T20:34:17.3733480Z (Reading database ... 30% 2021-05-19T20:34:17.3734208Z (Reading database ... 35% 2021-05-19T20:34:17.3734936Z (Reading database ... 40% 2021-05-19T20:34:17.3735870Z (Reading database ... 45% 2021-05-19T20:34:17.3736565Z (Reading database ... 50% 2021-05-19T20:34:17.3839044Z (Reading database ... 55% 2021-05-19T20:34:17.3882840Z (Reading database ... 60% 2021-05-19T20:34:17.3933012Z (Reading database ... 65% 2021-05-19T20:34:17.3989617Z (Reading database ... 70% 2021-05-19T20:34:17.4020690Z (Reading database ... 75% 2021-05-19T20:34:17.4350213Z (Reading database ... 80% 2021-05-19T20:34:17.4382476Z (Reading database ... 85% 2021-05-19T20:34:17.4491905Z (Reading database ... 90% 2021-05-19T20:34:17.4888288Z (Reading database ... 95% 2021-05-19T20:34:17.4889331Z (Reading database ... 100% 2021-05-19T20:34:17.4890829Z (Reading database ... 241954 files and directories currently installed.) 2021-05-19T20:34:17.4983497Z Preparing to unpack .../libudunits2-data_2.2.26-5_all.deb ... 2021-05-19T20:34:17.4992605Z Unpacking libudunits2-data (2.2.26-5) ... 2021-05-19T20:34:17.5278828Z Selecting previously unselected package libudunits2-0:amd64. 2021-05-19T20:34:17.5527459Z Preparing to unpack .../libudunits2-0_2.2.26-5_amd64.deb ... 2021-05-19T20:34:17.5555832Z Unpacking libudunits2-0:amd64 (2.2.26-5) ... 2021-05-19T20:34:17.5861758Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-19T20:34:17.6088471Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-19T20:34:17.6098080Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-19T20:34:17.6916414Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-19T20:34:17.6947387Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-19T20:34:17.6980945Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-19T20:34:17.7019535Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:34:17.8170234Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:19.7414838Z Reading package lists... 2021-05-19T20:34:19.9157008Z Building dependency tree... 2021-05-19T20:34:19.9177824Z Reading state information... 2021-05-19T20:34:20.1302801Z The following NEW packages will be installed: 2021-05-19T20:34:20.1306595Z libjq-dev 2021-05-19T20:34:20.2382301Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:20.2383443Z Need to get 11.2 kB of archives. 2021-05-19T20:34:20.2384597Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-19T20:34:20.2387781Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-19T20:34:20.6955685Z Fetched 11.2 kB in 0s (108 kB/s) 2021-05-19T20:34:20.7289412Z Selecting previously unselected package libjq-dev:amd64. 2021-05-19T20:34:20.7372624Z (Reading database ... 2021-05-19T20:34:20.7373230Z (Reading database ... 5% 2021-05-19T20:34:20.7373764Z (Reading database ... 10% 2021-05-19T20:34:20.7374282Z (Reading database ... 15% 2021-05-19T20:34:20.7374780Z (Reading database ... 20% 2021-05-19T20:34:20.7375289Z (Reading database ... 25% 2021-05-19T20:34:20.7375796Z (Reading database ... 30% 2021-05-19T20:34:20.7376287Z (Reading database ... 35% 2021-05-19T20:34:20.7376805Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-19T20:34:22.8641233Z Reading package lists... 2021-05-19T20:34:23.0351488Z Building dependency tree... 2021-05-19T20:34:23.0371648Z Reading state information... 2021-05-19T20:34:23.2371592Z The following NEW packages will be installed: 2021-05-19T20:34:23.2374843Z libmng2 2021-05-19T20:34:23.2674069Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:23.2674898Z Need to get 168 kB of archives. 2021-05-19T20:34:23.2675723Z After this operation, 571 kB of additional disk space will be used. 2021-05-19T20:34:23.2677690Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-19T20:34:23.7123554Z Fetched 168 kB in 0s (4922 kB/s) 2021-05-19T20:34:23.7471264Z Selecting previously unselected package libmng2:amd64. 2021-05-19T20:34:23.7551930Z (Reading database ... 2021-05-19T20:34:23.7552701Z (Reading database ... 5% 2021-05-19T20:34:23.7553364Z (Reading database ... 10% 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2021-05-19T20:34:24.6918242Z (Reading database ... 241989 files and directories currently installed.) 2021-05-19T20:34:24.6919815Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-19T20:34:24.6920755Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-19T20:34:24.6921592Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-19T20:34:24.6922534Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:25.9489418Z Reading package lists... 2021-05-19T20:34:26.1066120Z Building dependency tree... 2021-05-19T20:34:26.1087735Z Reading state information... 2021-05-19T20:34:26.2801790Z E: Unable to locate package libmng1 2021-05-19T20:34:26.3527079Z Reading package lists... 2021-05-19T20:34:26.5322026Z Building dependency tree... 2021-05-19T20:34:26.5344281Z Reading state information... 2021-05-19T20:34:26.6658434Z E: Unable to locate package libapparmor-devel 2021-05-19T20:34:26.7331298Z Reading package lists... 2021-05-19T20:34:26.9058661Z Building dependency tree... 2021-05-19T20:34:26.9079922Z Reading state information... 2021-05-19T20:34:27.0681017Z The following additional packages will be installed: 2021-05-19T20:34:27.0683752Z libij-java 2021-05-19T20:34:27.1214141Z The following NEW packages will be installed: 2021-05-19T20:34:27.1220793Z imagej libij-java 2021-05-19T20:34:27.1993583Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:27.1995005Z Need to get 2328 kB of archives. 2021-05-19T20:34:27.1996549Z After this operation, 2498 kB of additional disk space will be used. 2021-05-19T20:34:27.1999807Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-19T20:34:27.2808752Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-19T20:34:27.7339497Z Fetched 2328 kB in 0s (15.0 MB/s) 2021-05-19T20:34:27.7660485Z Selecting previously unselected package libij-java. 2021-05-19T20:34:27.7737897Z (Reading 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90% 2021-05-19T20:34:27.8929705Z (Reading database ... 95% 2021-05-19T20:34:27.8930355Z (Reading database ... 100% 2021-05-19T20:34:27.8931210Z (Reading database ... 241995 files and directories currently installed.) 2021-05-19T20:34:27.9036807Z Preparing to unpack .../libij-java_1.52r-1_all.deb ... 2021-05-19T20:34:27.9049534Z Unpacking libij-java (1.52r-1) ... 2021-05-19T20:34:28.0062181Z Selecting previously unselected package imagej. 2021-05-19T20:34:28.0303977Z Preparing to unpack .../imagej_1.52r-1_all.deb ... 2021-05-19T20:34:28.0312762Z Unpacking imagej (1.52r-1) ... 2021-05-19T20:34:28.0948763Z Setting up libij-java (1.52r-1) ... 2021-05-19T20:34:28.0975488Z Setting up imagej (1.52r-1) ... 2021-05-19T20:34:28.1010339Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-19T20:34:28.7912092Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:29.5193490Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-19T20:34:31.5544066Z Reading package lists... 2021-05-19T20:34:31.7332161Z Building dependency tree... 2021-05-19T20:34:31.7352057Z Reading state information... 2021-05-19T20:34:31.8986239Z Suggested packages: 2021-05-19T20:34:31.8988033Z bowtie2-examples 2021-05-19T20:34:31.9514594Z The following NEW packages will be installed: 2021-05-19T20:34:31.9523009Z bowtie2 2021-05-19T20:34:32.0020919Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:32.0022413Z Need to get 1324 kB of archives. 2021-05-19T20:34:32.0024365Z After this operation, 5630 kB of additional disk space will be used. 2021-05-19T20:34:32.0028085Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-19T20:34:32.4920936Z Fetched 1324 kB in 0s (17.0 MB/s) 2021-05-19T20:34:32.5266538Z Selecting previously unselected package bowtie2. 2021-05-19T20:34:32.5348690Z (Reading database ... 2021-05-19T20:34:32.5349585Z (Reading database ... 5% 2021-05-19T20:34:32.5350632Z (Reading database ... 10% 2021-05-19T20:34:32.5351245Z (Reading database ... 15% 2021-05-19T20:34:32.5351869Z (Reading database ... 20% 2021-05-19T20:34:32.5352440Z (Reading database ... 25% 2021-05-19T20:34:32.5352992Z (Reading database ... 30% 2021-05-19T20:34:32.5353525Z (Reading database ... 35% 2021-05-19T20:34:32.5354072Z (Reading database ... 40% 2021-05-19T20:34:32.5354678Z (Reading database ... 45% 2021-05-19T20:34:32.5355320Z (Reading database ... 50% 2021-05-19T20:34:32.5477331Z (Reading database ... 55% 2021-05-19T20:34:32.5525570Z (Reading database ... 60% 2021-05-19T20:34:32.5602647Z (Reading database ... 65% 2021-05-19T20:34:32.5630087Z (Reading database ... 70% 2021-05-19T20:34:32.5661265Z (Reading database ... 75% 2021-05-19T20:34:32.5993438Z (Reading database ... 80% 2021-05-19T20:34:32.6026649Z (Reading database ... 85% 2021-05-19T20:34:32.6142780Z (Reading database ... 90% 2021-05-19T20:34:32.6572677Z (Reading database ... 95% 2021-05-19T20:34:32.6573778Z (Reading database ... 100% 2021-05-19T20:34:32.6574807Z (Reading database ... 242018 files and directories currently installed.) 2021-05-19T20:34:32.6677513Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-19T20:34:32.6689127Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-19T20:34:32.8759030Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-19T20:34:32.8797377Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:35.7338523Z Reading package lists... 2021-05-19T20:34:35.9144341Z Building dependency tree... 2021-05-19T20:34:35.9165387Z Reading state information... 2021-05-19T20:34:36.0679626Z E: Unable to locate package install 2021-05-19T20:34:36.0681094Z E: Unable to locate package gdal 2021-05-19T20:34:36.1365419Z Reading package lists... 2021-05-19T20:34:36.3180284Z Building dependency tree... 2021-05-19T20:34:36.3201448Z Reading state information... 2021-05-19T20:34:36.3500673Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-19T20:34:36.3503710Z This may mean that the package is missing, has been obsoleted, or 2021-05-19T20:34:36.3505531Z is only available from another source 2021-05-19T20:34:36.3506590Z 2021-05-19T20:34:36.4600863Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-19T20:34:36.5284407Z Reading package lists... 2021-05-19T20:34:36.7023460Z Building dependency tree... 2021-05-19T20:34:36.7042691Z Reading state information... 2021-05-19T20:34:36.7288811Z Package libav-tools is not available, but is referred to by another package. 2021-05-19T20:34:36.7291004Z This may mean that the package is missing, has been obsoleted, or 2021-05-19T20:34:36.7292421Z is only available from another source 2021-05-19T20:34:36.7293750Z However the following packages replace it: 2021-05-19T20:34:36.7294800Z ffmpeg 2021-05-19T20:34:36.7296482Z 2021-05-19T20:34:36.8354509Z E: Package 'libav-tools' has no installation candidate 2021-05-19T20:34:36.9080329Z Reading package lists... 2021-05-19T20:34:37.1002993Z Building dependency tree... 2021-05-19T20:34:37.1024270Z Reading state information... 2021-05-19T20:34:37.2766744Z The following additional packages will be installed: 2021-05-19T20:34:37.2769385Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-19T20:34:37.2771808Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-19T20:34:37.2775274Z libssh2-1-dev 2021-05-19T20:34:37.2776144Z Suggested packages: 2021-05-19T20:34:37.2777425Z libgcrypt20-doc libmbedtls-doc 2021-05-19T20:34:37.3365635Z The following NEW packages will be installed: 2021-05-19T20:34:37.3369373Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-19T20:34:37.3375140Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-19T20:34:37.3382730Z libssh2-1-dev 2021-05-19T20:34:37.3643564Z 0 upgraded, 11 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:37.3644424Z Need to get 2667 kB of archives. 2021-05-19T20:34:37.3645236Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-19T20:34:37.3647264Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-19T20:34:37.3716319Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-19T20:34:37.3855395Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-19T20:34:38.1951256Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-19T20:34:38.1954137Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-19T20:34:38.1956458Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-19T20:34:38.1963369Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-19T20:34:38.1965304Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-19T20:34:38.1967433Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-19T20:34:38.1969425Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-19T20:34:38.1971358Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-19T20:34:38.1972408Z Fetched 2667 kB in 0s (34.4 MB/s) 2021-05-19T20:34:38.1973444Z Selecting previously unselected package libgpg-error-dev. 2021-05-19T20:34:38.1974216Z (Reading database ... 2021-05-19T20:34:38.1974766Z (Reading database ... 5% 2021-05-19T20:34:38.1975313Z (Reading database 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2021-05-19T20:34:38.1987635Z (Reading database ... 242044 files and directories currently installed.) 2021-05-19T20:34:38.1989001Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-19T20:34:38.1990006Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-19T20:34:38.1992963Z Selecting previously unselected package libgcrypt20-dev. 2021-05-19T20:34:38.1996063Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-19T20:34:38.1997119Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-19T20:34:38.2182827Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-19T20:34:38.2397020Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-19T20:34:38.2418364Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-19T20:34:38.2741530Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-19T20:34:38.2945658Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:38.2960234Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.3422998Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-19T20:34:38.3630412Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:38.3643902Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.4021200Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-19T20:34:38.4218291Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:38.4228520Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.4581763Z Selecting previously unselected package libgit2-28:amd64. 2021-05-19T20:34:38.4855830Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-19T20:34:38.4869849Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:38.5552704Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-19T20:34:38.5777017Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:38.5789181Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.6608314Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-19T20:34:38.6797022Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-19T20:34:38.6808464Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-19T20:34:38.7422125Z Selecting previously unselected package libhttp-parser-dev. 2021-05-19T20:34:38.7627662Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-19T20:34:38.7642061Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-19T20:34:38.7942163Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-19T20:34:38.8146574Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-19T20:34:38.8159516Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:38.9507124Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-19T20:34:38.9538852Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.9571123Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-19T20:34:38.9601834Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-19T20:34:38.9628442Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.9654680Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.9680535Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:38.9702955Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-19T20:34:38.9726573Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-19T20:34:38.9751860Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:38.9778877Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:38.9813120Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:44.4415389Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:34:44.5636890Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:46.5812314Z Reading package lists... 2021-05-19T20:34:46.7513645Z Building dependency tree... 2021-05-19T20:34:46.7537027Z Reading state information... 2021-05-19T20:34:47.0222368Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-19T20:34:47.0223782Z libtiff-dev set to manually installed. 2021-05-19T20:34:47.0224802Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:47.0967913Z Reading package lists... 2021-05-19T20:34:47.2763992Z Building dependency tree... 2021-05-19T20:34:47.2786165Z Reading state information... 2021-05-19T20:34:47.5372271Z unixodbc-dev is already the newest version (2.3.7). 2021-05-19T20:34:47.5373752Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:47.6061782Z Reading package lists... 2021-05-19T20:34:47.7849939Z Building dependency tree... 2021-05-19T20:34:47.7871145Z Reading state information... 2021-05-19T20:34:48.0030880Z The following NEW packages will be installed: 2021-05-19T20:34:48.0034275Z libsodium-dev 2021-05-19T20:34:48.0272250Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:48.0273142Z Need to get 169 kB of archives. 2021-05-19T20:34:48.0273964Z After this operation, 826 kB of additional disk space will be used. 2021-05-19T20:34:48.0275951Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-19T20:34:48.4866385Z Fetched 169 kB in 0s (5957 kB/s) 2021-05-19T20:34:48.5206576Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-19T20:34:48.5289271Z (Reading database ... 2021-05-19T20:34:48.5290061Z (Reading database ... 5% 2021-05-19T20:34:48.5290632Z (Reading database ... 10% 2021-05-19T20:34:48.5291321Z (Reading database ... 15% 2021-05-19T20:34:48.5291984Z (Reading database ... 20% 2021-05-19T20:34:48.5292622Z (Reading database ... 25% 2021-05-19T20:34:48.5293259Z (Reading database ... 30% 2021-05-19T20:34:48.5293905Z (Reading database ... 35% 2021-05-19T20:34:48.5294541Z (Reading database ... 40% 2021-05-19T20:34:48.5295451Z (Reading database ... 45% 2021-05-19T20:34:48.5296176Z (Reading database ... 50% 2021-05-19T20:34:48.5400450Z (Reading database ... 55% 2021-05-19T20:34:48.5446758Z (Reading database ... 60% 2021-05-19T20:34:48.5518771Z (Reading database ... 65% 2021-05-19T20:34:48.5544129Z (Reading database ... 70% 2021-05-19T20:34:48.5576242Z (Reading database ... 75% 2021-05-19T20:34:48.5896196Z (Reading database ... 80% 2021-05-19T20:34:48.5929241Z (Reading database ... 85% 2021-05-19T20:34:48.6039074Z (Reading database ... 90% 2021-05-19T20:34:48.6436512Z (Reading database ... 95% 2021-05-19T20:34:48.6437654Z (Reading database ... 100% 2021-05-19T20:34:48.6439174Z (Reading database ... 242547 files and directories currently installed.) 2021-05-19T20:34:48.6532893Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-19T20:34:48.6544151Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-19T20:34:48.7340405Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-19T20:34:50.7215916Z Reading package lists... 2021-05-19T20:34:50.9064193Z Building dependency tree... 2021-05-19T20:34:50.9085655Z Reading state information... 2021-05-19T20:34:51.0712519Z The following additional packages will be installed: 2021-05-19T20:34:51.0715611Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-19T20:34:51.1237815Z The following NEW packages will be installed: 2021-05-19T20:34:51.1243978Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-19T20:34:51.1245770Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-19T20:34:51.1506985Z 0 upgraded, 8 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:51.1507900Z Need to get 10.4 MB of archives. 2021-05-19T20:34:51.1508800Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-19T20:34:51.1510977Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-19T20:34:51.1750889Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-19T20:34:51.1964050Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-19T20:34:51.2125348Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-19T20:34:51.2258252Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-19T20:34:51.2492228Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-19T20:34:51.2725539Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-19T20:34:51.3198753Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-19T20:34:51.7758465Z Fetched 10.4 MB in 0s (53.8 MB/s) 2021-05-19T20:34:51.8103476Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-19T20:34:51.8187103Z (Reading database ... 2021-05-19T20:34:51.8195301Z (Reading database ... 5% 2021-05-19T20:34:51.8196114Z (Reading database ... 10% 2021-05-19T20:34:51.8196970Z (Reading database ... 15% 2021-05-19T20:34:51.8197716Z (Reading database ... 20% 2021-05-19T20:34:51.8198477Z (Reading database ... 25% 2021-05-19T20:34:51.8199200Z (Reading database ... 30% 2021-05-19T20:34:51.8199936Z (Reading database ... 35% 2021-05-19T20:34:51.8200668Z (Reading database ... 40% 2021-05-19T20:34:51.8201383Z (Reading database ... 45% 2021-05-19T20:34:51.8202116Z (Reading database ... 50% 2021-05-19T20:34:51.8304765Z (Reading database ... 55% 2021-05-19T20:34:51.8353314Z (Reading database ... 60% 2021-05-19T20:34:51.8426257Z (Reading database ... 65% 2021-05-19T20:34:51.8451819Z (Reading database ... 70% 2021-05-19T20:34:51.8482448Z (Reading database ... 75% 2021-05-19T20:34:51.8815688Z (Reading database ... 80% 2021-05-19T20:34:51.8847786Z (Reading database ... 85% 2021-05-19T20:34:51.8964162Z (Reading database ... 90% 2021-05-19T20:34:51.9378642Z (Reading database ... 95% 2021-05-19T20:34:51.9380262Z (Reading database ... 100% 2021-05-19T20:34:51.9381803Z (Reading database ... 242617 files and directories currently installed.) 2021-05-19T20:34:51.9479505Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ... 2021-05-19T20:34:51.9489663Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-19T20:34:52.0301374Z Selecting previously unselected package liblept5:amd64. 2021-05-19T20:34:52.0517180Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-19T20:34:52.0542023Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-19T20:34:52.1861891Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-19T20:34:52.2076503Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-19T20:34:52.2086768Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-19T20:34:52.3720905Z Selecting previously unselected package libtesseract4:amd64. 2021-05-19T20:34:52.3988051Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:52.3999776Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:52.5516116Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-19T20:34:52.5775922Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:52.5786762Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:53.6974755Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-19T20:34:53.6981822Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-19T20:34:53.6983588Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:53.6985083Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-19T20:34:53.6986700Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-19T20:34:53.6988150Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:53.6992956Z Selecting previously unselected package tesseract-ocr. 2021-05-19T20:34:53.6994498Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:53.6995683Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-19T20:34:53.6996910Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:53.6997974Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-19T20:34:53.6999042Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-19T20:34:53.7000176Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:53.7001323Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-19T20:34:53.7002544Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:53.7003735Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:53.7004845Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-19T20:34:53.7005873Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:56.8441920Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:58.8792085Z Reading package lists... 2021-05-19T20:34:59.0678614Z Building dependency tree... 2021-05-19T20:34:59.0701291Z Reading state information... 2021-05-19T20:34:59.3189387Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-19T20:34:59.3190831Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:59.3916169Z Reading package lists... 2021-05-19T20:34:59.5787546Z Building dependency tree... 2021-05-19T20:34:59.5815697Z Reading state information... 2021-05-19T20:34:59.7540056Z The following additional packages will be installed: 2021-05-19T20:34:59.7545104Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-19T20:34:59.7547331Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-19T20:34:59.7548643Z Suggested packages: 2021-05-19T20:34:59.7550135Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-19T20:34:59.8119464Z The following NEW packages will be installed: 2021-05-19T20:34:59.8124319Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-19T20:34:59.8131983Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-19T20:34:59.8560601Z 0 upgraded, 10 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:59.8562611Z Need to get 1459 kB of archives. 2021-05-19T20:34:59.8564243Z After this operation, 7754 kB of additional disk space will be used. 2021-05-19T20:34:59.8566544Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-19T20:34:59.8611106Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-19T20:34:59.8623437Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-19T20:34:59.8642314Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-19T20:34:59.8651548Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-19T20:34:59.8685824Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-19T20:34:59.8718190Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-19T20:34:59.8807202Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-19T20:34:59.8843615Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-19T20:34:59.8848940Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-19T20:35:00.3573942Z Fetched 1459 kB in 0s (19.8 MB/s) 2021-05-19T20:35:00.3940157Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-19T20:35:00.4028625Z (Reading database ... 2021-05-19T20:35:00.4029712Z (Reading database ... 5% 2021-05-19T20:35:00.4030687Z (Reading database ... 10% 2021-05-19T20:35:00.4031663Z (Reading database ... 15% 2021-05-19T20:35:00.4032607Z (Reading database ... 20% 2021-05-19T20:35:00.4033562Z (Reading database ... 25% 2021-05-19T20:35:00.4034531Z (Reading database ... 30% 2021-05-19T20:35:00.4035540Z (Reading database ... 35% 2021-05-19T20:35:00.4036499Z (Reading database ... 40% 2021-05-19T20:35:00.4037439Z (Reading database ... 45% 2021-05-19T20:35:00.4038389Z (Reading database ... 50% 2021-05-19T20:35:00.4147217Z (Reading database ... 55% 2021-05-19T20:35:00.4207692Z (Reading database ... 60% 2021-05-19T20:35:00.4256665Z (Reading database ... 65% 2021-05-19T20:35:00.4324982Z (Reading database ... 70% 2021-05-19T20:35:00.4361491Z (Reading database ... 75% 2021-05-19T20:35:00.4717111Z (Reading database ... 80% 2021-05-19T20:35:00.4754322Z (Reading database ... 85% 2021-05-19T20:35:00.4877516Z (Reading database ... 90% 2021-05-19T20:35:00.5323052Z (Reading database ... 95% 2021-05-19T20:35:00.5324109Z (Reading database ... 100% 2021-05-19T20:35:00.5325628Z (Reading database ... 242842 files and directories currently installed.) 2021-05-19T20:35:00.5434061Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:00.5462873Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:00.5822643Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-19T20:35:00.6031634Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:00.6041816Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:00.6381685Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-19T20:35:00.6607030Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:00.6620820Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:00.6982048Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-19T20:35:00.7206303Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:00.7221462Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:00.7538508Z Selecting previously unselected package comerr-dev:amd64. 2021-05-19T20:35:00.7805780Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-19T20:35:00.7844651Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-19T20:35:00.8222854Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-19T20:35:00.8433243Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:00.8446030Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:00.8901675Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-19T20:35:00.9143617Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-19T20:35:00.9192136Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-19T20:35:01.0022137Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-19T20:35:01.0240254Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:35:01.0250675Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-19T20:35:01.0782975Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-19T20:35:01.1013679Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:35:01.1022281Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.1381806Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-19T20:35:01.1566144Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-19T20:35:01.1576660Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-19T20:35:01.2815382Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-19T20:35:01.2854725Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.2889412Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-19T20:35:01.2917632Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-19T20:35:01.2957563Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.2986634Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.3014642Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.3042831Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.3067888Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:35:01.3095568Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-19T20:35:01.3132488Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:35:01.3370679Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:35:04.8949790Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:35:07.0206973Z Reading package lists... 2021-05-19T20:35:07.2153901Z Building dependency tree... 2021-05-19T20:35:07.2175908Z Reading state information... 2021-05-19T20:35:07.3840843Z E: Unable to locate package udunits 2021-05-19T20:35:07.4567917Z Reading package lists... 2021-05-19T20:35:07.6430417Z Building dependency tree... 2021-05-19T20:35:07.6451823Z Reading state information... 2021-05-19T20:35:07.8084555Z The following additional packages will be installed: 2021-05-19T20:35:07.8086632Z libwebpdemux2 2021-05-19T20:35:07.8629957Z The following NEW packages will be installed: 2021-05-19T20:35:07.8633663Z libwebp-dev libwebpdemux2 2021-05-19T20:35:07.8873843Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:35:07.8874922Z Need to get 277 kB of archives. 2021-05-19T20:35:07.8875869Z After this operation, 965 kB of additional disk space will be used. 2021-05-19T20:35:07.8878461Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-19T20:35:07.8897908Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-19T20:35:08.3697957Z Fetched 277 kB in 0s (8080 kB/s) 2021-05-19T20:35:08.4062461Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-19T20:35:08.4149748Z (Reading database ... 2021-05-19T20:35:08.4150405Z (Reading database ... 5% 2021-05-19T20:35:08.4150924Z (Reading 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... 100% 2021-05-19T20:35:09.2044099Z (Reading database ... 243142 files and directories currently installed.) 2021-05-19T20:35:09.2045931Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-19T20:35:09.2047181Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-19T20:35:09.2048887Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-19T20:35:09.2051501Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-19T20:35:09.2052712Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-19T20:35:09.2053761Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-19T20:35:09.2054778Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-19T20:35:09.2055883Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:35:10.7149973Z Reading package lists... 2021-05-19T20:35:10.8925415Z Building dependency tree... 2021-05-19T20:35:10.8947482Z Reading state information... 2021-05-19T20:35:11.0582511Z The following additional packages will be installed: 2021-05-19T20:35:11.0594387Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-19T20:35:11.0597189Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-19T20:35:11.0599521Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-19T20:35:11.0600781Z Suggested packages: 2021-05-19T20:35:11.0602359Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-19T20:35:11.0603570Z Recommended packages: 2021-05-19T20:35:11.0604429Z cargo 2021-05-19T20:35:11.1198300Z The following NEW packages will be installed: 2021-05-19T20:35:11.1204291Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-19T20:35:11.1206167Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-19T20:35:11.1207774Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-19T20:35:11.1523963Z 0 upgraded, 13 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:35:11.1524825Z Need to get 108 MB of archives. 2021-05-19T20:35:11.1525660Z After this operation, 501 MB of additional disk space will be used. 2021-05-19T20:35:11.1527687Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-19T20:35:11.1624847Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-19T20:35:11.1635978Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-19T20:35:11.1648167Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-19T20:35:11.1757976Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-19T20:35:11.1804070Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-19T20:35:11.1930616Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-19T20:35:11.3998531Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-19T20:35:12.6613009Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-19T20:35:13.2038064Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-19T20:35:13.2289821Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-19T20:35:13.2656778Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-19T20:35:13.4551855Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-19T20:35:13.9270650Z Fetched 108 MB in 2s (46.3 MB/s) 2021-05-19T20:35:13.9631885Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-19T20:35:13.9718224Z (Reading database ... 2021-05-19T20:35:13.9718910Z (Reading database ... 5% 2021-05-19T20:35:13.9719468Z (Reading database ... 10% 2021-05-19T20:35:13.9720022Z (Reading database ... 15% 2021-05-19T20:35:13.9720561Z (Reading database ... 20% 2021-05-19T20:35:13.9721111Z (Reading database ... 25% 2021-05-19T20:35:13.9721648Z (Reading database ... 30% 2021-05-19T20:35:13.9722191Z (Reading database ... 35% 2021-05-19T20:35:13.9722734Z (Reading database ... 40% 2021-05-19T20:35:13.9723270Z (Reading database ... 45% 2021-05-19T20:35:13.9723812Z (Reading database ... 50% 2021-05-19T20:35:13.9825548Z (Reading database ... 55% 2021-05-19T20:35:13.9885358Z (Reading database ... 60% 2021-05-19T20:35:13.9931064Z (Reading database ... 65% 2021-05-19T20:35:13.9993738Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-19T20:35:14.2298260Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-19T20:35:14.2782097Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-19T20:35:14.2995473Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-19T20:35:14.3005217Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-19T20:35:14.3822491Z Selecting previously unselected package libsource-highlight4v5. 2021-05-19T20:35:14.4074969Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-19T20:35:14.4087322Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-19T20:35:14.4662434Z Selecting previously unselected package libxxhash0:amd64. 2021-05-19T20:35:14.4880326Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-19T20:35:14.4890622Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-19T20:35:14.5157908Z Selecting previously unselected package gdb. 2021-05-19T20:35:14.5439289Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-19T20:35:14.5455265Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-19T20:35:14.9027055Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-19T20:35:14.9297999Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:35:14.9309440Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:21.8819423Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-19T20:35:21.9083944Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:35:21.9092596Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:25.2450241Z Selecting previously unselected package rustc. 2021-05-19T20:35:25.2715081Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:35:25.2724857Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:25.4821142Z Selecting previously unselected package cargo. 2021-05-19T20:35:25.5039046Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:35:25.5053187Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-19T20:35:25.8925637Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-19T20:35:25.9192043Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-19T20:35:25.9198982Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-19T20:35:27.1837066Z Selecting previously unselected package rust-gdb. 2021-05-19T20:35:27.2104661Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-19T20:35:27.2119759Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.2780717Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.2818664Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-19T20:35:27.2853330Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-19T20:35:27.2882954Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.2912207Z Setting up libipt2 (2.0.1-1) ... 2021-05-19T20:35:27.2935797Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-19T20:35:27.2962079Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-19T20:35:27.2990060Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.3014851Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-19T20:35:27.3042250Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-19T20:35:27.3074375Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.3103609Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-19T20:35:27.3142545Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:35:27.3174163Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:35:27.3407450Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:35:31.2080564Z Reading package lists... 2021-05-19T20:35:31.2081808Z Building dependency tree... 2021-05-19T20:35:31.2082674Z Reading state information... 2021-05-19T20:35:31.2083946Z The following additional packages will be installed: 2021-05-19T20:35:31.2085764Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-19T20:35:31.2087272Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-19T20:35:31.2088885Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-19T20:35:31.2090327Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-19T20:35:31.2091810Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-19T20:35:31.2093226Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-19T20:35:31.2094536Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-19T20:35:31.2096235Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-19T20:35:31.2097745Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-19T20:35:31.2099310Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-19T20:35:31.2101075Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-19T20:35:31.2102582Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-19T20:35:31.2104183Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-19T20:35:31.2105926Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-19T20:35:31.2107598Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-19T20:35:31.2109287Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-19T20:35:31.2110685Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-19T20:35:31.2112107Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-19T20:35:31.2113601Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-19T20:35:31.2114795Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-19T20:35:31.2115963Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-19T20:35:31.2117211Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-19T20:35:31.2118377Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-19T20:35:31.2119489Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-19T20:35:31.2120624Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-19T20:35:31.2121967Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-19T20:35:31.2123633Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-19T20:35:31.2125140Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-19T20:35:31.2126673Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-19T20:35:31.2128093Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-19T20:35:31.2129438Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-19T20:35:31.2130762Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-19T20:35:31.2132191Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-19T20:35:31.2133648Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-19T20:35:31.2135233Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-19T20:35:31.2136810Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-19T20:35:31.2138283Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-19T20:35:31.2139842Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-19T20:35:31.2141237Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-19T20:35:31.2142747Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-19T20:35:31.2144280Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-19T20:35:31.2145660Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-19T20:35:31.2147068Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-19T20:35:31.2148722Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-19T20:35:31.2150419Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-19T20:35:31.2151897Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-19T20:35:31.2153347Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-19T20:35:31.2154924Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-19T20:35:31.2156478Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-19T20:35:31.2157184Z Suggested packages: 2021-05-19T20:35:31.2158217Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-19T20:35:31.2159487Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-19T20:35:31.2160896Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-19T20:35:31.2162510Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-19T20:35:31.2163873Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-19T20:35:31.2165282Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-19T20:35:31.2166796Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-19T20:35:31.2168310Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-19T20:35:31.2169725Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-19T20:35:31.2171200Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-19T20:35:31.2172762Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-19T20:35:31.2174377Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-19T20:35:31.2175882Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-19T20:35:31.2176986Z wpagui libengine-pkcs11-openssl 2021-05-19T20:35:31.2177836Z The following NEW packages will be installed: 2021-05-19T20:35:31.2179055Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-19T20:35:31.2180625Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-19T20:35:31.2182114Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-19T20:35:31.2183541Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-19T20:35:31.2185014Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-19T20:35:31.2186428Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-19T20:35:31.2187724Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-19T20:35:31.2189283Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-19T20:35:31.2190687Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-19T20:35:31.2192023Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-19T20:35:31.2193414Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-19T20:35:31.2195059Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-19T20:35:31.2196638Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-19T20:35:31.2198389Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-19T20:35:31.2200080Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-19T20:35:31.2201654Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-19T20:35:31.2203166Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-19T20:35:31.2204697Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-19T20:35:31.2206286Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-19T20:35:31.2207586Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-19T20:35:31.2208959Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-19T20:35:31.2210202Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-19T20:35:31.2211383Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-19T20:35:31.2212493Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-19T20:35:31.2213624Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-19T20:35:31.2215095Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-19T20:35:31.2216447Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-19T20:35:31.2217848Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-19T20:35:31.2219718Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-19T20:35:31.2221166Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-19T20:35:31.2222523Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-19T20:35:31.2223845Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-19T20:35:31.2225258Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-19T20:35:31.2226730Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-19T20:35:31.2228286Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-19T20:35:31.2229881Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-19T20:35:31.2231388Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-19T20:35:31.2232702Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-19T20:35:31.2233989Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-19T20:35:31.2235388Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-19T20:35:31.2236788Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-19T20:35:31.2238097Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-19T20:35:31.2239420Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-19T20:35:31.2240944Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-19T20:35:31.2242535Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-19T20:35:31.2243912Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-19T20:35:31.2245261Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-19T20:35:31.2246732Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-19T20:35:31.2248160Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-19T20:35:31.2249179Z 0 upgraded, 214 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:35:31.2249925Z Need to get 183 MB of archives. 2021-05-19T20:35:31.2250730Z After this operation, 776 MB of additional disk space will be used. 2021-05-19T20:35:31.2252491Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-19T20:35:31.2254601Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-19T20:35:31.2496572Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-19T20:35:31.2511934Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-19T20:35:31.2521339Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-19T20:35:31.2529800Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-19T20:35:31.2535133Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-19T20:35:31.2545026Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-19T20:35:31.2552796Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-19T20:35:31.2558049Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-19T20:35:31.2575212Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-19T20:35:31.2597389Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-19T20:35:31.2662769Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-19T20:35:31.2668099Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-19T20:35:31.2673475Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-19T20:35:31.2679951Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-19T20:35:31.2685055Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-19T20:35:31.2690940Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-19T20:35:31.2696798Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-19T20:35:31.2702500Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-19T20:35:31.2710383Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-19T20:35:31.2718111Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-19T20:35:31.2724456Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-19T20:35:31.3129553Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-19T20:35:31.3542225Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-19T20:35:31.3582492Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-19T20:35:31.3599895Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4ubuntu0.1 [735 kB] 2021-05-19T20:35:31.3708633Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-19T20:35:31.3716280Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-19T20:35:31.3744969Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-19T20:35:31.3779747Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-19T20:35:31.4004670Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-19T20:35:31.4198608Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-19T20:35:31.4217258Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-19T20:35:31.4227110Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-19T20:35:31.4235299Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-19T20:35:31.6202951Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-19T20:35:31.6471335Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-19T20:35:31.7313153Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-19T20:35:31.7378739Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-19T20:35:31.7406777Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-19T20:35:31.7448143Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-19T20:35:31.7461769Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-19T20:35:31.7495603Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-19T20:35:31.7528265Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-19T20:35:31.7538574Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-19T20:35:31.7578581Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-19T20:35:31.7630319Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-19T20:35:31.7646432Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-19T20:35:31.7714600Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-19T20:35:31.7734578Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-19T20:35:31.7747201Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-19T20:35:31.7754552Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-19T20:35:31.7775330Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-19T20:35:31.7870830Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-19T20:35:31.7890304Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-19T20:35:31.9191242Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-19T20:35:31.9348606Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-19T20:35:31.9364398Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-19T20:35:31.9417557Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-19T20:35:31.9424664Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-19T20:35:31.9438738Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-19T20:35:31.9477007Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-19T20:35:31.9504309Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-19T20:35:31.9523954Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-19T20:35:31.9599989Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-19T20:35:31.9648956Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-19T20:35:31.9694357Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-19T20:35:31.9990246Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-19T20:35:32.0177109Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-19T20:35:32.1625428Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-19T20:35:32.1637706Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-19T20:35:32.2174769Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-19T20:35:32.2183147Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-19T20:35:32.2213338Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-19T20:35:32.2278773Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-19T20:35:32.2724964Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-19T20:35:32.4249795Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-19T20:35:32.4517611Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-19T20:35:32.4803490Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-19T20:35:32.5111872Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-19T20:35:32.5124700Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-19T20:35:32.5176280Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-19T20:35:32.5560647Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-19T20:35:32.6712350Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-19T20:35:32.7183734Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-19T20:35:32.7192725Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-19T20:35:32.7198584Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-19T20:35:32.7217009Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-19T20:35:32.7369926Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-19T20:35:32.7378396Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-19T20:35:32.7424902Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-19T20:35:32.7451620Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-19T20:35:32.7503574Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-19T20:35:32.7530096Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-19T20:35:32.7543016Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-19T20:35:32.8058824Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-19T20:35:32.8160244Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-19T20:35:32.8215524Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-19T20:35:32.8218365Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-19T20:35:32.8255986Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-19T20:35:32.8318438Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-19T20:35:32.8448314Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-19T20:35:32.8496638Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-19T20:35:32.8506340Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-19T20:35:32.8642641Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-19T20:35:32.8740985Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-19T20:35:33.5196226Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-19T20:35:33.5399593Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-19T20:35:33.5690161Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-19T20:35:33.6364815Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-19T20:35:33.7987766Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-19T20:35:33.8001609Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-19T20:35:33.8027441Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4ubuntu0.1 [620 kB] 2021-05-19T20:35:33.8187997Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-19T20:35:33.8203772Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-19T20:35:33.9005922Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-19T20:35:33.9222018Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-19T20:35:33.9264005Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-19T20:35:33.9278167Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-19T20:35:33.9306672Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-19T20:35:33.9370065Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-19T20:35:33.9409747Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-19T20:35:33.9415266Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-19T20:35:33.9426154Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-19T20:35:33.9467973Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-19T20:35:33.9481963Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-19T20:35:33.9491044Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-19T20:35:33.9769070Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-19T20:35:34.0030064Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-19T20:35:34.0300726Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-19T20:35:34.0581099Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-19T20:35:34.0616781Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-19T20:35:34.1291106Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-19T20:35:34.1550065Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-19T20:35:34.1820443Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-19T20:35:34.2108514Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-19T20:35:34.2554314Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-19T20:35:34.2841927Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-19T20:35:34.3156687Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-19T20:35:34.3423704Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-19T20:35:34.3722935Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-19T20:35:34.3988302Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-19T20:35:34.4263859Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-19T20:35:34.4550441Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-19T20:35:34.4825685Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-19T20:35:34.5088988Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-19T20:35:34.5400498Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-19T20:35:34.6046917Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-19T20:35:34.7002530Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-19T20:35:34.7015616Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-19T20:35:34.7149748Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-19T20:35:34.7192603Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-19T20:35:34.7209942Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-19T20:35:34.7321171Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-19T20:35:34.7334601Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-19T20:35:34.8108370Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-19T20:35:35.0545777Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-19T20:35:35.1180011Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-19T20:35:35.2461459Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-19T20:35:35.2760484Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-19T20:35:35.3048939Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-19T20:35:35.3066013Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-19T20:35:35.3168305Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-19T20:35:35.3176701Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-19T20:35:35.3209860Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-19T20:35:35.3216895Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-19T20:35:35.3374216Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-19T20:35:35.3458499Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-19T20:35:35.4314950Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-19T20:35:35.4326001Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-19T20:35:35.4339158Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-19T20:35:35.4347697Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-19T20:35:35.4361051Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-19T20:35:35.4369737Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-19T20:35:35.4433988Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-19T20:35:35.4445049Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-19T20:35:35.4465921Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-19T20:35:35.4480477Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-19T20:35:35.4498556Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-19T20:35:35.4520678Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-19T20:35:35.4529240Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-19T20:35:35.4797631Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-19T20:35:35.4820115Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-19T20:35:35.5891852Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-19T20:35:35.5896717Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-19T20:35:35.5905831Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-19T20:35:35.5961639Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-19T20:35:35.6239451Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-19T20:35:35.6273848Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.4 [363 kB] 2021-05-19T20:35:35.6618648Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-19T20:35:35.6884688Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-19T20:35:35.7411198Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-19T20:35:35.7442135Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-19T20:35:35.7484991Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-19T20:35:35.8324617Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-19T20:35:35.8633151Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-19T20:35:35.8659401Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-19T20:35:35.8936767Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-19T20:35:35.9217460Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-19T20:35:36.0085909Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-19T20:35:36.2155142Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-19T20:35:36.2473770Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-19T20:35:36.2932177Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-19T20:35:36.7039985Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-19T20:35:36.8010869Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-19T20:35:36.8347267Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-19T20:35:36.8626881Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-19T20:35:36.8729871Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-19T20:35:36.8749809Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-19T20:35:36.8974018Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-19T20:35:36.9152174Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-19T20:35:36.9170988Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-19T20:35:36.9182053Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-19T20:35:38.1235239Z Fetched 183 MB in 6s (31.8 MB/s) 2021-05-19T20:35:38.1638307Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-19T20:35:38.1724296Z (Reading database ... 2021-05-19T20:35:38.1725383Z (Reading database ... 5% 2021-05-19T20:35:38.1725981Z (Reading database ... 10% 2021-05-19T20:35:38.1728238Z (Reading database ... 15% 2021-05-19T20:35:38.1729081Z (Reading database ... 20% 2021-05-19T20:35:38.1731008Z (Reading database ... 25% 2021-05-19T20:35:38.1731823Z (Reading database ... 30% 2021-05-19T20:35:38.1733088Z (Reading database ... 35% 2021-05-19T20:35:38.1733845Z (Reading database ... 40% 2021-05-19T20:35:38.1734469Z (Reading database ... 45% 2021-05-19T20:35:38.1735080Z (Reading database ... 50% 2021-05-19T20:35:38.1837528Z (Reading database ... 55% 2021-05-19T20:35:38.1896084Z (Reading database ... 60% 2021-05-19T20:35:38.1942690Z (Reading database ... 65% 2021-05-19T20:35:38.1998350Z (Reading database ... 70% 2021-05-19T20:35:38.2029793Z (Reading database ... 75% 2021-05-19T20:35:38.2365389Z (Reading database ... 80% 2021-05-19T20:35:38.2402817Z (Reading database ... 85% 2021-05-19T20:35:38.2530021Z (Reading database ... 90% 2021-05-19T20:35:38.2974575Z (Reading database ... 95% 2021-05-19T20:35:38.2975191Z (Reading database ... 100% 2021-05-19T20:35:38.2976109Z (Reading database ... 243925 files and directories currently installed.) 2021-05-19T20:35:38.3085944Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-19T20:35:38.3108467Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-19T20:35:38.3502242Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-19T20:35:38.3725055Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:38.3814169Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:38.5999342Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-19T20:35:38.6260414Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:35:38.6270074Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:35:38.6701787Z Selecting previously unselected package libegl1:amd64. 2021-05-19T20:35:38.6910927Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:35:38.6922303Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:35:38.7262959Z Selecting previously unselected package libevdev2:amd64. 2021-05-19T20:35:38.7463553Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-05-19T20:35:38.7481458Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-19T20:35:38.7821479Z Selecting previously unselected package libmtdev1:amd64. 2021-05-19T20:35:38.8027055Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-05-19T20:35:38.8040070Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-05-19T20:35:38.8386526Z Selecting previously unselected package libwacom-common. 2021-05-19T20:35:38.8651023Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-05-19T20:35:38.8661499Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-05-19T20:35:38.9301632Z Selecting previously unselected package libwacom2:amd64. 2021-05-19T20:35:38.9500437Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-05-19T20:35:38.9509976Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-19T20:35:38.9759962Z Selecting previously unselected package libinput-bin. 2021-05-19T20:35:39.0031575Z Preparing to unpack .../008-libinput-bin_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-19T20:35:39.0042549Z Unpacking libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:39.0324730Z Selecting previously unselected package libinput10:amd64. 2021-05-19T20:35:39.0591282Z Preparing to unpack .../009-libinput10_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-19T20:35:39.0603183Z Unpacking libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:39.1031804Z Selecting previously unselected package libqt5dbus5:amd64. 2021-05-19T20:35:39.1310013Z Preparing to unpack .../010-libqt5dbus5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:39.1319796Z Unpacking libqt5dbus5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:39.1861100Z Selecting previously unselected package libqt5network5:amd64. 2021-05-19T20:35:39.2071612Z Preparing to unpack .../011-libqt5network5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:39.2086588Z Unpacking libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:39.3101753Z Selecting previously unselected package libxcb-icccm4:amd64. 2021-05-19T20:35:39.3311569Z Preparing to unpack .../012-libxcb-icccm4_0.4.1-1.1_amd64.deb ... 2021-05-19T20:35:39.3325813Z Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... 2021-05-19T20:35:39.3622799Z Selecting previously unselected package libxcb-util1:amd64. 2021-05-19T20:35:39.3856541Z Preparing to unpack .../013-libxcb-util1_0.4.0-0ubuntu3_amd64.deb ... 2021-05-19T20:35:39.3867283Z Unpacking libxcb-util1:amd64 (0.4.0-0ubuntu3) ... 2021-05-19T20:35:39.4181568Z Selecting previously unselected package libxcb-image0:amd64. 2021-05-19T20:35:39.4397420Z Preparing to unpack .../014-libxcb-image0_0.4.0-1build1_amd64.deb ... 2021-05-19T20:35:39.4409560Z Unpacking libxcb-image0:amd64 (0.4.0-1build1) ... 2021-05-19T20:35:39.4665230Z Selecting previously unselected package libxcb-keysyms1:amd64. 2021-05-19T20:35:39.4939007Z Preparing to unpack .../015-libxcb-keysyms1_0.4.0-1build1_amd64.deb ... 2021-05-19T20:35:39.4949746Z Unpacking libxcb-keysyms1:amd64 (0.4.0-1build1) ... 2021-05-19T20:35:39.5193246Z Selecting previously unselected package libxcb-randr0:amd64. 2021-05-19T20:35:39.5464349Z Preparing to unpack .../016-libxcb-randr0_1.14-2_amd64.deb ... 2021-05-19T20:35:39.5475844Z Unpacking libxcb-randr0:amd64 (1.14-2) ... 2021-05-19T20:35:39.5732504Z Selecting previously unselected package libxcb-render-util0:amd64. 2021-05-19T20:35:39.5999796Z Preparing to unpack .../017-libxcb-render-util0_0.3.9-1build1_amd64.deb ... 2021-05-19T20:35:39.6013525Z Unpacking libxcb-render-util0:amd64 (0.3.9-1build1) ... 2021-05-19T20:35:39.6283389Z Selecting previously unselected package libxcb-xinerama0:amd64. 2021-05-19T20:35:39.6553949Z Preparing to unpack .../018-libxcb-xinerama0_1.14-2_amd64.deb ... 2021-05-19T20:35:39.6564891Z Unpacking libxcb-xinerama0:amd64 (1.14-2) ... 2021-05-19T20:35:39.6806829Z Selecting previously unselected package libxcb-xinput0:amd64. 2021-05-19T20:35:39.7066769Z Preparing to unpack .../019-libxcb-xinput0_1.14-2_amd64.deb ... 2021-05-19T20:35:39.7077613Z Unpacking libxcb-xinput0:amd64 (1.14-2) ... 2021-05-19T20:35:39.7352595Z Selecting previously unselected package libxcb-xkb1:amd64. 2021-05-19T20:35:39.7623836Z Preparing to unpack .../020-libxcb-xkb1_1.14-2_amd64.deb ... 2021-05-19T20:35:39.7633843Z Unpacking libxcb-xkb1:amd64 (1.14-2) ... 2021-05-19T20:35:39.7904819Z Selecting previously unselected package libxkbcommon-x11-0:amd64. 2021-05-19T20:35:39.8169410Z Preparing to unpack .../021-libxkbcommon-x11-0_0.10.0-1_amd64.deb ... 2021-05-19T20:35:39.8184855Z Unpacking libxkbcommon-x11-0:amd64 (0.10.0-1) ... 2021-05-19T20:35:39.8581232Z Selecting previously unselected package libqt5gui5:amd64. 2021-05-19T20:35:39.8805043Z Preparing to unpack .../022-libqt5gui5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:39.8885340Z Unpacking libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:40.2287622Z Selecting previously unselected package libqt5widgets5:amd64. 2021-05-19T20:35:40.2555949Z Preparing to unpack .../023-libqt5widgets5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:40.2568498Z Unpacking libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:40.5261210Z Selecting previously unselected package libqt5svg5:amd64. 2021-05-19T20:35:40.5480068Z Preparing to unpack .../024-libqt5svg5_5.12.8-0ubuntu1_amd64.deb ... 2021-05-19T20:35:40.5492925Z Unpacking libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:40.5905994Z Selecting previously unselected package liborc-0.4-0:amd64. 2021-05-19T20:35:40.6181472Z Preparing to unpack .../025-liborc-0.4-0_1%3a0.4.31-1_amd64.deb ... 2021-05-19T20:35:40.6190643Z Unpacking liborc-0.4-0:amd64 (1:0.4.31-1) ... 2021-05-19T20:35:40.6742328Z Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. 2021-05-19T20:35:40.6962120Z 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/etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-19T20:36:16.8156784Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-19T20:36:17.3926721Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.4) ... 2021-05-19T20:36:17.7134688Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:17.7164614Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4ubuntu0.1) ... 2021-05-19T20:36:17.7191574Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:17.7218274Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:17.7244626Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:17.7273062Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:17.7309004Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-19T20:36:17.9055974Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9059334Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-19T20:36:17.9063250Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9065984Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-19T20:36:17.9566920Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9569646Z if direction is "increasing": 2021-05-19T20:36:17.9573016Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9575426Z elif direction is "decreasing": 2021-05-19T20:36:17.9783007Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9785765Z if direction is "increasing": 2021-05-19T20:36:17.9790508Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:17.9791543Z elif direction is "decreasing": 2021-05-19T20:36:19.0395523Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:19.0397115Z if props["offset_coordinates"] is "data": 2021-05-19T20:36:19.0398828Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-19T20:36:19.0400039Z if props["coordinates"] is not "data": 2021-05-19T20:36:19.8925749Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-19T20:36:20.4863530Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-19T20:36:20.4866445Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-19T20:36:20.4868845Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-19T20:36:21.7763078Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-19T20:36:21.7802212Z First installation detected... 2021-05-19T20:36:21.7803181Z Checking NSS setup... 2021-05-19T20:36:21.7847298Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-19T20:36:21.7880411Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:21.7937576Z Setting up python3-owslib (0.19.1-1) ... 2021-05-19T20:36:22.1071403Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-19T20:36:22.1108972Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-19T20:36:22.1154645Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.1181153Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-19T20:36:22.7193540Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-19T20:36:22.7205466Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.7207575Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.7209047Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.7210332Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-19T20:36:22.7211592Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-19T20:36:22.7212962Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.7215571Z Setting up grass-core (7.8.2-1build3) ... 2021-05-19T20:36:22.7562334Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:22.7564494Z if value is '': 2021-05-19T20:36:22.8691141Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:22.8692362Z if do_profiling is "True" or do_profiling is "1": 2021-05-19T20:36:22.8693635Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:22.8694572Z if do_profiling is "True" or do_profiling is "1": 2021-05-19T20:36:22.8695619Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-19T20:36:22.8696587Z if driver_string is not None and driver_string is not "": 2021-05-19T20:36:22.9199211Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:22.9201325Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-19T20:36:22.9203626Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:36:22.9205637Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-19T20:36:22.9906237Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-19T20:36:22.9940370Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0028194Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-19T20:36:23.0061544Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0089429Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0271455Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.0303988Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0338069Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0374493Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:23.0402228Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.0431661Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-19T20:36:23.1386470Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.1414665Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.1448151Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.1471724Z Setting up modemmanager (1.12.8-1) ... 2021-05-19T20:36:23.2902536Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-19T20:36:23.2905620Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-19T20:36:23.8968612Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.8997220Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9020888Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-19T20:36:23.9050964Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9081163Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.9107793Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9157989Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-19T20:36:23.9206120Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-19T20:36:23.9231139Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-19T20:36:23.9259793Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9289912Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9323233Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:23.9352394Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.9375775Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:23.9403363Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:23.9435439Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9465478Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-19T20:36:23.9499954Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:23.9527194Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:23.9555342Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:24.1351217Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:24.1385526Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:24.1413967Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:24.1457115Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.7034898Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:59.7073063Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:59.7102145Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.7134192Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:59.7165332Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.7190338Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.7215277Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:59.7236355Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.8833601Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.8868013Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:59.8928542Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:59.8952440Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-19T20:36:59.8978971Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:37:00.0808003Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:37:00.0834990Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:37:00.0869373Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:37:00.0998180Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-19T20:37:00.1109049Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-19T20:37:01.1105207Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:37:01.1291127Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-19T20:37:01.1570306Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-19T20:37:01.1739853Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-19T20:37:01.2486156Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:37:01.2844418Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-19T20:37:01.5902171Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:37:15.3609635Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-19T20:37:15.3806875Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-19T20:37:17.4236494Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-19T20:37:17.4237106Z with: 2021-05-19T20:37:17.4237648Z github_slug: neuroconductor/dcmsort 2021-05-19T20:37:17.4238151Z env: 2021-05-19T20:37:17.4238636Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:17.4239164Z TIC_DEPLOY_KEY: 2021-05-19T20:37:17.4240057Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:17.4242062Z GITHUB_PAT: *** 2021-05-19T20:37:17.4242904Z COVERALLS_TOKEN: *** 2021-05-19T20:37:17.4243411Z continue-on-error: false 2021-05-19T20:37:17.4243912Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:17.4244421Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:17.4245069Z TZ: UTC 2021-05-19T20:37:17.4245505Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:17.4245956Z NOT_CRAN: true 2021-05-19T20:37:17.4246374Z ##[endgroup] 2021-05-19T20:37:17.4630289Z repo slug is: neuroconductor/dcmsort 2021-05-19T20:37:17.4763708Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-19T20:37:17.4764383Z env: 2021-05-19T20:37:17.4764881Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:17.4765399Z TIC_DEPLOY_KEY: 2021-05-19T20:37:17.4766311Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:17.4767809Z GITHUB_PAT: *** 2021-05-19T20:37:17.4768633Z COVERALLS_TOKEN: *** 2021-05-19T20:37:17.4769151Z continue-on-error: false 2021-05-19T20:37:17.4769640Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:17.4770145Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:17.4770615Z TZ: UTC 2021-05-19T20:37:17.4771017Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:17.4771455Z NOT_CRAN: true 2021-05-19T20:37:17.4771838Z ##[endgroup] 2021-05-19T20:37:17.6994295Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-19T20:37:17.6994901Z with: 2021-05-19T20:37:17.6995292Z repo_name: dcmsort 2021-05-19T20:37:17.6995977Z repo_version: 0.3.0 2021-05-19T20:37:17.6996436Z runner_os: Linux 2021-05-19T20:37:17.6996860Z R_version: 4.0 2021-05-19T20:37:17.6997242Z env: 2021-05-19T20:37:17.6997729Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:17.6998249Z TIC_DEPLOY_KEY: 2021-05-19T20:37:17.6999159Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:17.7001054Z GITHUB_PAT: *** 2021-05-19T20:37:17.7001962Z COVERALLS_TOKEN: *** 2021-05-19T20:37:17.7002510Z continue-on-error: false 2021-05-19T20:37:17.7003057Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:17.7003587Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:17.7004087Z TZ: UTC 2021-05-19T20:37:17.7004532Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:17.7004983Z NOT_CRAN: true 2021-05-19T20:37:17.7005418Z ##[endgroup] 2021-05-19T20:37:17.7416411Z Package: dcmsort 2021-05-19T20:37:17.7419451Z Version: 0.3.0 2021-05-19T20:37:17.7420259Z OS: Linux 2021-05-19T20:37:17.7479790Z ##[group]Run install.packages('remotes') 2021-05-19T20:37:17.7480650Z install.packages('remotes') 2021-05-19T20:37:17.7481488Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-19T20:37:17.7482533Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-19T20:37:17.7489680Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:37:17.7490123Z env: 2021-05-19T20:37:17.7490577Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:17.7491079Z TIC_DEPLOY_KEY: 2021-05-19T20:37:17.7491913Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:17.7493316Z GITHUB_PAT: *** 2021-05-19T20:37:17.7494159Z COVERALLS_TOKEN: *** 2021-05-19T20:37:17.7494683Z continue-on-error: false 2021-05-19T20:37:17.7495176Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:17.7495687Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:17.7496166Z TZ: UTC 2021-05-19T20:37:17.7496566Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:17.7497109Z NOT_CRAN: true 2021-05-19T20:37:17.7497510Z ##[endgroup] 2021-05-19T20:37:17.9387517Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:37:17.9388485Z (as ‘lib’ is unspecified) 2021-05-19T20:37:33.7948453Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-19T20:37:34.1681537Z Content type 'binary/octet-stream' length 391648 bytes (382 KB) 2021-05-19T20:37:34.1743392Z ================================================== 2021-05-19T20:37:34.1744267Z downloaded 382 KB 2021-05-19T20:37:34.1744872Z 2021-05-19T20:37:34.4562388Z * installing *binary* package ‘remotes’ ... 2021-05-19T20:37:34.4609419Z * DONE (remotes) 2021-05-19T20:37:34.4665094Z 2021-05-19T20:37:34.4666176Z The downloaded source packages are in 2021-05-19T20:37:34.4667786Z ‘/tmp/RtmpBO9ukX/downloaded_packages’ 2021-05-19T20:37:55.8688636Z ##[group]Run actions/cache@v1 2021-05-19T20:37:55.8689099Z with: 2021-05-19T20:37:55.8689584Z path: /home/runner/work/_temp/Library 2021-05-19T20:37:55.8692886Z key: Linux-9062e2676fcbc8371c382d1bc4b5d886f4e4bdffdd9e7160e92f55e288306f12-1-64d15b7e4beaccdea3e3d2318d07bedd57cfba981271443f11d8f7fb892c43cf 2021-05-19T20:37:55.8697240Z restore-keys: Linux-9062e2676fcbc8371c382d1bc4b5d886f4e4bdffdd9e7160e92f55e288306f12-1- 2021-05-19T20:37:55.8698562Z env: 2021-05-19T20:37:55.8699045Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:55.8699727Z TIC_DEPLOY_KEY: 2021-05-19T20:37:55.8700639Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:55.8702633Z GITHUB_PAT: *** 2021-05-19T20:37:55.8703540Z COVERALLS_TOKEN: *** 2021-05-19T20:37:55.8704097Z continue-on-error: false 2021-05-19T20:37:55.8704618Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:55.8705157Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:55.8705713Z TZ: UTC 2021-05-19T20:37:55.8706151Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:55.8706604Z NOT_CRAN: true 2021-05-19T20:37:55.8707030Z ##[endgroup] 2021-05-19T20:37:55.9199646Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-19T20:37:55.9267460Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-19T20:37:55.9268371Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-19T20:37:55.9269214Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-19T20:37:55.9270015Z sudo -s eval "$sysreqs" 2021-05-19T20:37:55.9316935Z shell: /usr/bin/bash -e {0} 2021-05-19T20:37:55.9317385Z env: 2021-05-19T20:37:55.9317878Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:55.9318412Z TIC_DEPLOY_KEY: 2021-05-19T20:37:55.9319336Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:55.9320857Z GITHUB_PAT: *** 2021-05-19T20:37:55.9321763Z COVERALLS_TOKEN: *** 2021-05-19T20:37:55.9322329Z continue-on-error: false 2021-05-19T20:37:55.9322869Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:55.9323413Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:55.9323909Z TZ: UTC 2021-05-19T20:37:55.9324368Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:55.9324884Z NOT_CRAN: true 2021-05-19T20:37:55.9325422Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-19T20:37:55.9325950Z ##[endgroup] 2021-05-19T20:37:56.1457286Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:37:56.6843832Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-19T20:38:13.8658357Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-19T20:38:13.8660183Z crayon (NA -> 1.4.1) [CRAN] 2021-05-19T20:38:13.8661431Z R6 (NA -> 2.5.0) [CRAN] 2021-05-19T20:38:13.8662567Z desc (NA -> 1.3.0) [CRAN] 2021-05-19T20:38:13.8663761Z debugme (NA -> 1.1.0) [CRAN] 2021-05-19T20:38:13.8682642Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-19T20:38:13.8700153Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:38:13.8701302Z (as ‘lib’ is unspecified) 2021-05-19T20:38:29.7754416Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-19T20:38:30.0283105Z Content type 'binary/octet-stream' length 97084 bytes (94 KB) 2021-05-19T20:38:30.0318703Z ================================================== 2021-05-19T20:38:30.0319617Z downloaded 94 KB 2021-05-19T20:38:30.0320134Z 2021-05-19T20:38:30.0355317Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-19T20:38:30.5578024Z Content type 'binary/octet-stream' length 137207 bytes (133 KB) 2021-05-19T20:38:30.5609285Z ================================================== 2021-05-19T20:38:30.5610858Z downloaded 133 KB 2021-05-19T20:38:30.5611817Z 2021-05-19T20:38:30.5647108Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-19T20:38:30.9479611Z Content type 'binary/octet-stream' length 81940 bytes (80 KB) 2021-05-19T20:38:30.9501643Z ================================================== 2021-05-19T20:38:30.9503036Z downloaded 80 KB 2021-05-19T20:38:30.9503808Z 2021-05-19T20:38:30.9542548Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-19T20:38:31.4789344Z Content type 'binary/octet-stream' length 525226 bytes (512 KB) 2021-05-19T20:38:31.4874689Z ================================================== 2021-05-19T20:38:31.4875304Z downloaded 512 KB 2021-05-19T20:38:31.4875611Z 2021-05-19T20:38:31.4916264Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-19T20:38:31.9936257Z Content type 'binary/octet-stream' length 1015329 bytes (991 KB) 2021-05-19T20:38:32.0043344Z ================================================== 2021-05-19T20:38:32.0043984Z downloaded 991 KB 2021-05-19T20:38:32.0044309Z 2021-05-19T20:38:32.2655420Z * installing *binary* package ‘rprojroot’ ... 2021-05-19T20:38:32.2715346Z * DONE (rprojroot) 2021-05-19T20:38:32.5075911Z * installing *binary* package ‘crayon’ ... 2021-05-19T20:38:32.5140826Z * DONE (crayon) 2021-05-19T20:38:32.7558260Z * installing *binary* package ‘R6’ ... 2021-05-19T20:38:32.7621295Z * DONE (R6) 2021-05-19T20:38:33.0420295Z * installing *binary* package ‘desc’ ... 2021-05-19T20:38:33.0492700Z * DONE (desc) 2021-05-19T20:38:33.3215827Z * installing *binary* package ‘debugme’ ... 2021-05-19T20:38:33.3278138Z * DONE (debugme) 2021-05-19T20:38:33.3337476Z 2021-05-19T20:38:33.3338623Z The downloaded source packages are in 2021-05-19T20:38:33.3340771Z ‘/tmp/Rtmpwmmd3b/downloaded_packages’ 2021-05-19T20:38:33.3349821Z Running `R CMD build`... 2021-05-19T20:38:33.5918476Z * checking for file ‘/tmp/Rtmpwmmd3b/remotes662149edc247/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-19T20:38:33.5920061Z * preparing ‘sysreqs’: 2021-05-19T20:38:33.5921174Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:38:33.5922752Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:38:33.5926121Z * checking for empty or unneeded directories 2021-05-19T20:38:33.5927687Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:38:33.5929654Z (as ‘lib’ is unspecified) 2021-05-19T20:38:33.5930483Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:38:33.5931625Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-19T20:38:33.8218582Z * installing *source* package ‘sysreqs’ ... 2021-05-19T20:38:33.8221177Z ** using staged installation 2021-05-19T20:38:33.8363293Z ** R 2021-05-19T20:38:33.8401608Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:38:34.2359800Z ** help 2021-05-19T20:38:34.2589637Z *** installing help indices 2021-05-19T20:38:34.2778906Z ** building package indices 2021-05-19T20:38:34.4966851Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:38:34.7148280Z ** testing if installed package can be loaded from final location 2021-05-19T20:38:34.9326730Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:38:34.9333006Z * DONE (sysreqs) 2021-05-19T20:38:52.7240233Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-19T20:38:52.7242869Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-19T20:38:52.7244803Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-19T20:38:52.7380788Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-19T20:38:53.2707358Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-19T20:38:53.2708942Z Hit:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-19T20:38:53.2714741Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-19T20:38:53.2716797Z Hit:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-19T20:38:54.5701072Z Reading package lists... 2021-05-19T20:38:54.6520666Z Reading package lists... 2021-05-19T20:38:54.8394825Z Building dependency tree... 2021-05-19T20:38:54.8419941Z Reading state information... 2021-05-19T20:38:55.0194814Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-19T20:38:55.0196541Z libicu-dev set to manually installed. 2021-05-19T20:38:55.0197711Z pandoc is already the newest version (2.7.3-1). 2021-05-19T20:38:55.0198694Z The following additional packages will be installed: 2021-05-19T20:38:55.0200151Z libbibutils6 libghc-pandoc-citeproc-data libssl1.1 2021-05-19T20:38:55.0203910Z Suggested packages: 2021-05-19T20:38:55.0205123Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev libssl-doc 2021-05-19T20:38:55.0754838Z The following NEW packages will be installed: 2021-05-19T20:38:55.0760952Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-19T20:38:55.0762907Z pandoc-citeproc 2021-05-19T20:38:55.0769057Z The following packages will be upgraded: 2021-05-19T20:38:55.0772001Z libssl-dev libssl1.1 2021-05-19T20:38:55.0988669Z 2 upgraded, 4 newly installed, 0 to remove and 15 not upgraded. 2021-05-19T20:38:55.0989719Z Need to get 16.6 MB of archives. 2021-05-19T20:38:55.0990807Z After this operation, 109 MB of additional disk space will be used. 2021-05-19T20:38:55.0992927Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl-dev amd64 1.1.1f-1ubuntu2.4 [1583 kB] 2021-05-19T20:38:55.1412427Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.4 [1319 kB] 2021-05-19T20:38:55.1769981Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-19T20:38:55.1885666Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-19T20:38:55.1967942Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-19T20:38:55.1990119Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-19T20:38:56.1689685Z Preconfiguring packages ... 2021-05-19T20:38:56.2664571Z Fetched 16.6 MB in 1s (25.2 MB/s) 2021-05-19T20:38:56.3160299Z (Reading database ... 2021-05-19T20:38:56.3161000Z (Reading database ... 5% 2021-05-19T20:38:56.3162106Z (Reading database ... 10% 2021-05-19T20:38:56.3162822Z (Reading database ... 15% 2021-05-19T20:38:56.3163491Z (Reading database ... 20% 2021-05-19T20:38:56.3164158Z (Reading database ... 25% 2021-05-19T20:38:56.3164836Z (Reading database ... 30% 2021-05-19T20:38:56.3165496Z (Reading database ... 35% 2021-05-19T20:38:56.3166156Z (Reading database ... 40% 2021-05-19T20:38:56.3166840Z (Reading database ... 45% 2021-05-19T20:38:56.3172984Z (Reading database ... 50% 2021-05-19T20:38:56.3298295Z (Reading database ... 55% 2021-05-19T20:38:56.3348786Z (Reading database ... 60% 2021-05-19T20:38:56.3433457Z (Reading database ... 65% 2021-05-19T20:38:56.3468240Z (Reading database ... 70% 2021-05-19T20:38:56.3827140Z (Reading database ... 75% 2021-05-19T20:38:56.3864112Z (Reading database ... 80% 2021-05-19T20:38:56.3933228Z (Reading database ... 85% 2021-05-19T20:38:56.4053475Z (Reading database ... 90% 2021-05-19T20:38:56.4534298Z (Reading database ... 95% 2021-05-19T20:38:56.4535341Z (Reading database ... 100% 2021-05-19T20:38:56.4536844Z (Reading database ... 259136 files and directories currently installed.) 2021-05-19T20:38:56.4651925Z Preparing to unpack .../0-libssl-dev_1.1.1f-1ubuntu2.4_amd64.deb ... 2021-05-19T20:38:56.4688997Z Unpacking libssl-dev:amd64 (1.1.1f-1ubuntu2.4) over (1.1.1f-1ubuntu2.3) ... 2021-05-19T20:38:56.7095786Z Preparing to unpack .../1-libssl1.1_1.1.1f-1ubuntu2.4_amd64.deb ... 2021-05-19T20:38:56.7198927Z Unpacking libssl1.1:amd64 (1.1.1f-1ubuntu2.4) over (1.1.1f-1ubuntu2.3) ... 2021-05-19T20:38:56.8822703Z Selecting previously unselected package libbibutils6. 2021-05-19T20:38:56.9084336Z Preparing to unpack .../2-libbibutils6_6.2-1_amd64.deb ... 2021-05-19T20:38:56.9097466Z Unpacking libbibutils6 (6.2-1) ... 2021-05-19T20:38:56.9942764Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-19T20:38:57.0180813Z Preparing to unpack .../3-libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-19T20:38:57.0197835Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-19T20:38:57.0862882Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-19T20:38:57.1104341Z Preparing to unpack .../4-libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-19T20:38:57.1115901Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-19T20:38:57.1541565Z Selecting previously unselected package pandoc-citeproc. 2021-05-19T20:38:57.1795055Z Preparing to unpack .../5-pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-19T20:38:57.1805924Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-19T20:38:57.1847603Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-19T20:38:58.7433834Z Setting up libssl1.1:amd64 (1.1.1f-1ubuntu2.4) ... 2021-05-19T20:38:58.9220512Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-19T20:38:58.9250721Z Setting up libbibutils6 (6.2-1) ... 2021-05-19T20:38:58.9279673Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-19T20:38:58.9307984Z Setting up libssl-dev:amd64 (1.1.1f-1ubuntu2.4) ... 2021-05-19T20:38:58.9338911Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-19T20:38:58.9381427Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:39:02.7524147Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:39:04.6684795Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-19T20:39:04.6685608Z remotes::install_github("ropensci/tic") 2021-05-19T20:39:04.6686365Z remotes::install_github("muschellij2/ghtravis") 2021-05-19T20:39:04.6687205Z remotes::install_github("muschellij2/aghast") 2021-05-19T20:39:04.6688072Z remotes::install_cran("covr") 2021-05-19T20:39:04.6695254Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:39:04.6695715Z env: 2021-05-19T20:39:04.6696208Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:39:04.6696709Z TIC_DEPLOY_KEY: 2021-05-19T20:39:04.6697566Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:39:04.6699382Z GITHUB_PAT: *** 2021-05-19T20:39:04.6700639Z COVERALLS_TOKEN: *** 2021-05-19T20:39:04.6701208Z continue-on-error: false 2021-05-19T20:39:04.6701734Z VDIFFR_RUN_TESTS: 2021-05-19T20:39:04.6702278Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:39:04.6702817Z TZ: UTC 2021-05-19T20:39:04.6703264Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:39:04.6703813Z NOT_CRAN: true 2021-05-19T20:39:04.6704210Z ##[endgroup] 2021-05-19T20:39:04.8908279Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:39:05.4542170Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-19T20:39:22.4032933Z rlang (NA -> 0.4.11) [CRAN] 2021-05-19T20:39:22.4034321Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-19T20:39:22.4036057Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-19T20:39:22.4037218Z sys (NA -> 3.4 ) [CRAN] 2021-05-19T20:39:22.4038419Z askpass (NA -> 1.1 ) [CRAN] 2021-05-19T20:39:22.4039629Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-19T20:39:22.4040847Z mime (NA -> 0.10 ) [CRAN] 2021-05-19T20:39:22.4042026Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-19T20:39:22.4043218Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-19T20:39:22.4044410Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-19T20:39:22.4045540Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-19T20:39:22.4046768Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-19T20:39:22.4047956Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-19T20:39:22.4049087Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-19T20:39:22.4050312Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-19T20:39:22.4051590Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:39:22.4052852Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-19T20:39:22.4054036Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-19T20:39:22.4056128Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-19T20:39:22.4057527Z whisker (NA -> 0.4 ) [CRAN] 2021-05-19T20:39:22.4058761Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-19T20:39:22.4060286Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-19T20:39:22.4061555Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:39:22.4062743Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:39:22.4063907Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:39:22.4065065Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-19T20:39:22.4066220Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-19T20:39:22.4067426Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-19T20:39:22.4068618Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-19T20:39:22.4069832Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-19T20:39:22.4071037Z git2r (NA -> 0.28.0) [CRAN] 2021-05-19T20:39:22.4078676Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-19T20:39:22.4082190Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:39:22.4083770Z (as ‘lib’ is unspecified) 2021-05-19T20:39:38.1127597Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-19T20:39:38.4957666Z Content type 'binary/octet-stream' length 1395145 bytes (1.3 MB) 2021-05-19T20:39:38.5108707Z ================================================== 2021-05-19T20:39:38.5109763Z downloaded 1.3 MB 2021-05-19T20:39:38.5110604Z 2021-05-19T20:39:38.5146447Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-19T20:39:38.7677260Z Content type 'binary/octet-stream' length 232460 bytes (227 KB) 2021-05-19T20:39:38.7740718Z ================================================== 2021-05-19T20:39:38.7741562Z downloaded 227 KB 2021-05-19T20:39:38.7742231Z 2021-05-19T20:39:38.7781371Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-19T20:39:39.0283345Z Content type 'binary/octet-stream' length 144550 bytes (141 KB) 2021-05-19T20:39:39.0327864Z ================================================== 2021-05-19T20:39:39.0329296Z downloaded 141 KB 2021-05-19T20:39:39.0330204Z 2021-05-19T20:39:39.0367094Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-19T20:39:39.5773727Z Content type 'binary/octet-stream' length 54926 bytes (53 KB) 2021-05-19T20:39:39.5787129Z ================================================== 2021-05-19T20:39:39.5788064Z downloaded 53 KB 2021-05-19T20:39:39.5788632Z 2021-05-19T20:39:39.5832145Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-19T20:39:39.9642531Z Content type 'binary/octet-stream' length 23680 bytes (23 KB) 2021-05-19T20:39:39.9644005Z ================================================== 2021-05-19T20:39:39.9645238Z downloaded 23 KB 2021-05-19T20:39:39.9645872Z 2021-05-19T20:39:39.9698807Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-19T20:39:40.2296331Z Content type 'binary/octet-stream' length 1492423 bytes (1.4 MB) 2021-05-19T20:39:40.3533847Z ================================================== 2021-05-19T20:39:40.3534446Z downloaded 1.4 MB 2021-05-19T20:39:40.3534781Z 2021-05-19T20:39:40.3577207Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-19T20:39:40.6117194Z Content type 'binary/octet-stream' length 37651 bytes (36 KB) 2021-05-19T20:39:40.6120886Z ================================================== 2021-05-19T20:39:40.6121488Z downloaded 36 KB 2021-05-19T20:39:40.6121818Z 2021-05-19T20:39:40.6161367Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-19T20:39:40.9227111Z Content type 'binary/octet-stream' length 905527 bytes (884 KB) 2021-05-19T20:39:40.9450094Z ================================================== 2021-05-19T20:39:40.9450747Z downloaded 884 KB 2021-05-19T20:39:40.9451060Z 2021-05-19T20:39:40.9496910Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-19T20:39:41.2116911Z Content type 'binary/octet-stream' length 536214 bytes (523 KB) 2021-05-19T20:39:41.2279583Z ================================================== 2021-05-19T20:39:41.2280218Z downloaded 523 KB 2021-05-19T20:39:41.2280578Z 2021-05-19T20:39:41.2321101Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-19T20:39:41.6182193Z Content type 'binary/octet-stream' length 13018 bytes (12 KB) 2021-05-19T20:39:41.6186060Z ================================================== 2021-05-19T20:39:41.6186932Z downloaded 12 KB 2021-05-19T20:39:41.6187462Z 2021-05-19T20:39:41.6248439Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-19T20:39:42.0070488Z Content type 'binary/octet-stream' length 501372 bytes (489 KB) 2021-05-19T20:39:42.0181503Z ================================================== 2021-05-19T20:39:42.0182059Z downloaded 489 KB 2021-05-19T20:39:42.0182421Z 2021-05-19T20:39:42.0224039Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-19T20:39:42.2732814Z Content type 'binary/octet-stream' length 93295 bytes (91 KB) 2021-05-19T20:39:42.2750393Z ================================================== 2021-05-19T20:39:42.2751953Z downloaded 91 KB 2021-05-19T20:39:42.2752902Z 2021-05-19T20:39:42.2789011Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-19T20:39:42.6602547Z Content type 'binary/octet-stream' length 519945 bytes (507 KB) 2021-05-19T20:39:42.6738379Z ================================================== 2021-05-19T20:39:42.6739410Z downloaded 507 KB 2021-05-19T20:39:42.6742147Z 2021-05-19T20:39:42.6777833Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-19T20:39:43.2020074Z Content type 'binary/octet-stream' length 636656 bytes (621 KB) 2021-05-19T20:39:43.2091570Z ================================================== 2021-05-19T20:39:43.2093150Z downloaded 621 KB 2021-05-19T20:39:43.2094218Z 2021-05-19T20:39:43.2133639Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-19T20:39:43.8191370Z Content type 'binary/octet-stream' length 273399 bytes (266 KB) 2021-05-19T20:39:43.8255910Z ================================================== 2021-05-19T20:39:43.8256541Z downloaded 266 KB 2021-05-19T20:39:43.8256874Z 2021-05-19T20:39:43.8300743Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-19T20:39:44.3799691Z Content type 'binary/octet-stream' length 171705 bytes (167 KB) 2021-05-19T20:39:44.3834190Z ================================================== 2021-05-19T20:39:44.3835754Z downloaded 167 KB 2021-05-19T20:39:44.3836685Z 2021-05-19T20:39:44.3873218Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-19T20:39:44.6382770Z Content type 'binary/octet-stream' length 241070 bytes (235 KB) 2021-05-19T20:39:44.6431695Z ================================================== 2021-05-19T20:39:44.6433446Z downloaded 235 KB 2021-05-19T20:39:44.6434416Z 2021-05-19T20:39:44.6469665Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-19T20:39:44.9141041Z Content type 'binary/octet-stream' length 283697 bytes (277 KB) 2021-05-19T20:39:44.9201183Z ================================================== 2021-05-19T20:39:44.9201956Z downloaded 277 KB 2021-05-19T20:39:44.9202459Z 2021-05-19T20:39:44.9246944Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-19T20:39:45.3086620Z Content type 'binary/octet-stream' length 206158 bytes (201 KB) 2021-05-19T20:39:45.3138815Z ================================================== 2021-05-19T20:39:45.3140225Z downloaded 201 KB 2021-05-19T20:39:45.3140908Z 2021-05-19T20:39:45.3188505Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-19T20:39:45.6959415Z Content type 'binary/octet-stream' length 65826 bytes (64 KB) 2021-05-19T20:39:45.6975234Z ================================================== 2021-05-19T20:39:45.6976585Z downloaded 64 KB 2021-05-19T20:39:45.6977357Z 2021-05-19T20:39:45.7018294Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-19T20:39:46.0902524Z Content type 'binary/octet-stream' length 47325 bytes (46 KB) 2021-05-19T20:39:46.0911629Z ================================================== 2021-05-19T20:39:46.0912235Z downloaded 46 KB 2021-05-19T20:39:46.0912554Z 2021-05-19T20:39:46.0955313Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-19T20:39:46.6186245Z Content type 'binary/octet-stream' length 427374 bytes (417 KB) 2021-05-19T20:39:46.6262581Z ================================================== 2021-05-19T20:39:46.6263177Z downloaded 417 KB 2021-05-19T20:39:46.6263484Z 2021-05-19T20:39:46.6311564Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-19T20:39:47.0128377Z Content type 'binary/octet-stream' length 93556 bytes (91 KB) 2021-05-19T20:39:47.0139447Z ================================================== 2021-05-19T20:39:47.0141299Z downloaded 91 KB 2021-05-19T20:39:47.0142199Z 2021-05-19T20:39:47.0181528Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-19T20:39:47.3467409Z Content type 'binary/octet-stream' length 136720 bytes (133 KB) 2021-05-19T20:39:47.3503045Z ================================================== 2021-05-19T20:39:47.3504098Z downloaded 133 KB 2021-05-19T20:39:47.3504668Z 2021-05-19T20:39:47.3547864Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-19T20:39:47.8613093Z Content type 'binary/octet-stream' length 278807 bytes (272 KB) 2021-05-19T20:39:47.8654199Z ================================================== 2021-05-19T20:39:47.8655211Z downloaded 272 KB 2021-05-19T20:39:47.8655780Z 2021-05-19T20:39:47.8714140Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-19T20:39:48.3944390Z Content type 'binary/octet-stream' length 754591 bytes (736 KB) 2021-05-19T20:39:48.4104258Z ================================================== 2021-05-19T20:39:48.4105339Z downloaded 736 KB 2021-05-19T20:39:48.4105894Z 2021-05-19T20:39:48.4146861Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-19T20:39:48.9548461Z Content type 'binary/octet-stream' length 47147 bytes (46 KB) 2021-05-19T20:39:48.9563497Z ================================================== 2021-05-19T20:39:48.9565009Z downloaded 46 KB 2021-05-19T20:39:48.9565946Z 2021-05-19T20:39:48.9601532Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-19T20:39:49.3427557Z Content type 'binary/octet-stream' length 68425 bytes (66 KB) 2021-05-19T20:39:49.3432040Z ================================================== 2021-05-19T20:39:49.3433478Z downloaded 66 KB 2021-05-19T20:39:49.3434403Z 2021-05-19T20:39:49.3476009Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-19T20:39:49.7235289Z Content type 'binary/octet-stream' length 704079 bytes (687 KB) 2021-05-19T20:39:49.7310376Z ================================================== 2021-05-19T20:39:49.7312331Z downloaded 687 KB 2021-05-19T20:39:49.7313917Z 2021-05-19T20:39:49.7352032Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-19T20:39:50.3909724Z Content type 'binary/octet-stream' length 47070 bytes (45 KB) 2021-05-19T20:39:50.3912385Z ================================================== 2021-05-19T20:39:50.3913680Z downloaded 45 KB 2021-05-19T20:39:50.3914590Z 2021-05-19T20:39:50.3956895Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-19T20:39:51.0098154Z Content type 'binary/octet-stream' length 616131 bytes (601 KB) 2021-05-19T20:39:51.0173822Z ================================================== 2021-05-19T20:39:51.0174787Z downloaded 601 KB 2021-05-19T20:39:51.0175335Z 2021-05-19T20:39:51.3561055Z * installing *binary* package ‘rlang’ ... 2021-05-19T20:39:51.3630330Z * DONE (rlang) 2021-05-19T20:39:51.6264651Z * installing *binary* package ‘magrittr’ ... 2021-05-19T20:39:51.6343509Z * DONE (magrittr) 2021-05-19T20:39:51.8852378Z * installing *binary* package ‘glue’ ... 2021-05-19T20:39:51.8919082Z * DONE (glue) 2021-05-19T20:39:52.1306411Z * installing *binary* package ‘sys’ ... 2021-05-19T20:39:52.1365779Z * DONE (sys) 2021-05-19T20:39:52.3723058Z * installing *binary* package ‘mime’ ... 2021-05-19T20:39:52.3769593Z * DONE (mime) 2021-05-19T20:39:52.7173212Z * installing *binary* package ‘curl’ ... 2021-05-19T20:39:52.7256042Z * DONE (curl) 2021-05-19T20:39:53.0068512Z * installing *binary* package ‘jsonlite’ ... 2021-05-19T20:39:53.0148940Z * DONE (jsonlite) 2021-05-19T20:39:53.2372343Z * installing *binary* package ‘ini’ ... 2021-05-19T20:39:53.2425801Z * DONE (ini) 2021-05-19T20:39:53.4835407Z * installing *binary* package ‘gitcreds’ ... 2021-05-19T20:39:53.4886217Z * DONE (gitcreds) 2021-05-19T20:39:53.8022793Z * installing *binary* package ‘zip’ ... 2021-05-19T20:39:53.8107277Z * DONE (zip) 2021-05-19T20:39:54.0759544Z * installing *binary* package ‘rstudioapi’ ... 2021-05-19T20:39:54.0842429Z * DONE (rstudioapi) 2021-05-19T20:39:54.3546954Z * installing *binary* package ‘fastmap’ ... 2021-05-19T20:39:54.3596035Z * DONE (fastmap) 2021-05-19T20:39:54.6402076Z * installing *binary* package ‘yaml’ ... 2021-05-19T20:39:54.6458577Z * DONE (yaml) 2021-05-19T20:39:54.9027320Z * installing *binary* package ‘withr’ ... 2021-05-19T20:39:54.9079507Z * DONE (withr) 2021-05-19T20:39:55.1621800Z * installing *binary* package ‘whisker’ ... 2021-05-19T20:39:55.1678511Z * DONE (whisker) 2021-05-19T20:39:55.4053165Z * installing *binary* package ‘rappdirs’ ... 2021-05-19T20:39:55.4110064Z * DONE (rappdirs) 2021-05-19T20:39:55.7342757Z * installing *binary* package ‘fs’ ... 2021-05-19T20:39:55.7412367Z * DONE (fs) 2021-05-19T20:39:55.9785321Z * installing *binary* package ‘clipr’ ... 2021-05-19T20:39:55.9840927Z * DONE (clipr) 2021-05-19T20:39:56.2710654Z * installing *binary* package ‘git2r’ ... 2021-05-19T20:39:56.2781607Z * DONE (git2r) 2021-05-19T20:39:56.5139010Z * installing *binary* package ‘askpass’ ... 2021-05-19T20:39:56.5206310Z * DONE (askpass) 2021-05-19T20:39:56.7907336Z * installing *binary* package ‘cli’ ... 2021-05-19T20:39:56.7976955Z * DONE (cli) 2021-05-19T20:39:57.0723994Z * installing *binary* package ‘purrr’ ... 2021-05-19T20:39:57.0805638Z * DONE (purrr) 2021-05-19T20:39:57.3322931Z * installing *binary* package ‘lifecycle’ ... 2021-05-19T20:39:57.3372254Z * DONE (lifecycle) 2021-05-19T20:39:57.5771336Z * installing *binary* package ‘cachem’ ... 2021-05-19T20:39:57.5821585Z * DONE (cachem) 2021-05-19T20:39:57.9817618Z * installing *binary* package ‘openssl’ ... 2021-05-19T20:39:57.9903536Z * DONE (openssl) 2021-05-19T20:39:58.2184132Z * installing *binary* package ‘memoise’ ... 2021-05-19T20:39:58.2224612Z * DONE (memoise) 2021-05-19T20:39:58.5044567Z * installing *binary* package ‘httr’ ... 2021-05-19T20:39:58.5098186Z * DONE (httr) 2021-05-19T20:39:58.7492191Z * installing *binary* package ‘credentials’ ... 2021-05-19T20:39:58.7560253Z * DONE (credentials) 2021-05-19T20:39:58.9994009Z * installing *binary* package ‘gh’ ... 2021-05-19T20:39:59.0061620Z * DONE (gh) 2021-05-19T20:39:59.2752418Z * installing *binary* package ‘gert’ ... 2021-05-19T20:39:59.2825302Z * DONE (gert) 2021-05-19T20:39:59.5967656Z * installing *binary* package ‘usethis’ ... 2021-05-19T20:39:59.6042153Z * DONE (usethis) 2021-05-19T20:39:59.6111538Z 2021-05-19T20:39:59.6112931Z The downloaded source packages are in 2021-05-19T20:39:59.6114483Z ‘/tmp/RtmpP5xPeZ/downloaded_packages’ 2021-05-19T20:39:59.6123668Z Running `R CMD build`... 2021-05-19T20:40:02.0315202Z * checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf7d620f3/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-19T20:40:02.0316836Z * preparing ‘tic’: 2021-05-19T20:40:02.0317976Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:40:02.0319144Z * installing the package to process help pages 2021-05-19T20:40:02.0320513Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:40:02.0321650Z * checking for empty or unneeded directories 2021-05-19T20:40:02.0322804Z Removed empty directory ‘tic/.circleci’ 2021-05-19T20:40:02.0323932Z Removed empty directory ‘tic/pkgdown’ 2021-05-19T20:40:02.0324934Z * building ‘tic_0.10.0.tar.gz’ 2021-05-19T20:40:02.0327041Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:40:02.0328145Z (as ‘lib’ is unspecified) 2021-05-19T20:40:02.4033288Z * installing *source* package ‘tic’ ... 2021-05-19T20:40:02.4035487Z ** using staged installation 2021-05-19T20:40:02.4329596Z ** R 2021-05-19T20:40:02.4539808Z ** inst 2021-05-19T20:40:02.4573584Z ** preparing package for lazy loading 2021-05-19T20:40:02.8477618Z ** help 2021-05-19T20:40:03.0203359Z *** installing help indices 2021-05-19T20:40:03.1293207Z *** copying figures 2021-05-19T20:40:03.1297711Z ** building package indices 2021-05-19T20:40:03.4323893Z ** installing vignettes 2021-05-19T20:40:03.4376846Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:03.7277369Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:04.0908574Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:04.0941216Z * DONE (tic) 2021-05-19T20:40:04.1086824Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:40:04.3038609Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-19T20:40:05.3675541Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-19T20:40:05.3680173Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-19T20:40:05.3684662Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-19T20:40:05.3686426Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:40:05.3688487Z (as ‘lib’ is unspecified) 2021-05-19T20:40:05.3690402Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-19T20:40:05.3692146Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-19T20:40:05.3693900Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-19T20:40:05.3695602Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-19T20:40:05.3698999Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-19T20:40:05.3701401Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-19T20:40:05.3704872Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-19T20:40:05.3705605Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-19T20:40:05.3706322Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-19T20:40:05.3707037Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-19T20:40:05.3707781Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:40:05.3708521Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-19T20:40:05.3709258Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-19T20:40:05.3710019Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-19T20:40:05.3710774Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-19T20:40:05.3711473Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-19T20:40:05.3712181Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-19T20:40:05.3712868Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-19T20:40:05.3713584Z xfun (NA -> 0.23 ) [CRAN] 2021-05-19T20:40:05.3714307Z markdown (NA -> 1.1 ) [CRAN] 2021-05-19T20:40:05.3715019Z highr (NA -> 0.9 ) [CRAN] 2021-05-19T20:40:05.3715747Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-19T20:40:05.3716479Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-19T20:40:05.3717190Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-19T20:40:05.3717903Z knitr (NA -> 1.33 ) [CRAN] 2021-05-19T20:40:05.3718622Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-19T20:40:05.3719373Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-19T20:40:05.3720088Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:40:05.3720830Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-19T20:40:05.3721624Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-19T20:40:05.3722464Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-19T20:40:05.3723165Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-19T20:40:05.3723868Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-19T20:40:05.3724555Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-19T20:40:05.3725442Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-19T20:40:05.3726411Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-19T20:40:20.8816988Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-19T20:40:21.2811253Z Content type 'binary/octet-stream' length 237664 bytes (232 KB) 2021-05-19T20:40:21.2856406Z ================================================== 2021-05-19T20:40:21.2857331Z downloaded 232 KB 2021-05-19T20:40:21.2857856Z 2021-05-19T20:40:21.2892157Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-19T20:40:21.8199800Z Content type 'binary/octet-stream' length 1621042 bytes (1.5 MB) 2021-05-19T20:40:21.8414870Z ================================================== 2021-05-19T20:40:21.8416046Z downloaded 1.5 MB 2021-05-19T20:40:21.8416601Z 2021-05-19T20:40:21.8535206Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-19T20:40:22.1015339Z Content type 'binary/octet-stream' length 17554 bytes (17 KB) 2021-05-19T20:40:22.1017886Z ================================================== 2021-05-19T20:40:22.1018428Z downloaded 17 KB 2021-05-19T20:40:22.1018753Z 2021-05-19T20:40:22.1055860Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-19T20:40:22.3606740Z Content type 'binary/octet-stream' length 1011310 bytes (987 KB) 2021-05-19T20:40:22.3698453Z ================================================== 2021-05-19T20:40:22.3699961Z downloaded 987 KB 2021-05-19T20:40:22.3700549Z 2021-05-19T20:40:22.3736733Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-19T20:40:22.6268285Z Content type 'binary/octet-stream' length 812232 bytes (793 KB) 2021-05-19T20:40:22.6362193Z ================================================== 2021-05-19T20:40:22.6363169Z downloaded 793 KB 2021-05-19T20:40:22.6363689Z 2021-05-19T20:40:22.6399545Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-19T20:40:22.8930214Z Content type 'binary/octet-stream' length 43984 bytes (42 KB) 2021-05-19T20:40:22.8941123Z ================================================== 2021-05-19T20:40:22.8942472Z downloaded 42 KB 2021-05-19T20:40:22.8943427Z 2021-05-19T20:40:22.8977985Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-19T20:40:23.2791841Z Content type 'binary/octet-stream' length 254147 bytes (248 KB) 2021-05-19T20:40:23.2857442Z ================================================== 2021-05-19T20:40:23.2858016Z downloaded 248 KB 2021-05-19T20:40:23.2858308Z 2021-05-19T20:40:23.2898723Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-19T20:40:24.0176762Z Content type 'binary/octet-stream' length 1003508 bytes (979 KB) 2021-05-19T20:40:24.0275347Z ================================================== 2021-05-19T20:40:24.0276009Z downloaded 979 KB 2021-05-19T20:40:24.0276340Z 2021-05-19T20:40:24.0315973Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-19T20:40:24.7670069Z Content type 'binary/octet-stream' length 69493 bytes (67 KB) 2021-05-19T20:40:24.7670844Z ================================================== 2021-05-19T20:40:24.7671338Z downloaded 67 KB 2021-05-19T20:40:24.7671645Z 2021-05-19T20:40:24.7709989Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-19T20:40:25.1507185Z Content type 'binary/octet-stream' length 363109 bytes (354 KB) 2021-05-19T20:40:25.1566425Z ================================================== 2021-05-19T20:40:25.1567060Z downloaded 354 KB 2021-05-19T20:40:25.1567393Z 2021-05-19T20:40:25.1608848Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-19T20:40:25.4145122Z Content type 'binary/octet-stream' length 423282 bytes (413 KB) 2021-05-19T20:40:25.4212617Z ================================================== 2021-05-19T20:40:25.4213216Z downloaded 413 KB 2021-05-19T20:40:25.4213522Z 2021-05-19T20:40:25.4253041Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-19T20:40:25.6777166Z Content type 'binary/octet-stream' length 15999 bytes (15 KB) 2021-05-19T20:40:25.6778094Z ================================================== 2021-05-19T20:40:25.6778606Z downloaded 15 KB 2021-05-19T20:40:25.6778927Z 2021-05-19T20:40:25.6818141Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-19T20:40:26.4367779Z Content type 'binary/octet-stream' length 150404 bytes (146 KB) 2021-05-19T20:40:26.4399983Z ================================================== 2021-05-19T20:40:26.4400930Z downloaded 146 KB 2021-05-19T20:40:26.4401499Z 2021-05-19T20:40:26.4457852Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-19T20:40:26.9730059Z Content type 'binary/octet-stream' length 74183 bytes (72 KB) 2021-05-19T20:40:26.9746112Z ================================================== 2021-05-19T20:40:26.9746967Z downloaded 72 KB 2021-05-19T20:40:26.9747506Z 2021-05-19T20:40:26.9781927Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-19T20:40:27.3641296Z Content type 'binary/octet-stream' length 40293 bytes (39 KB) 2021-05-19T20:40:27.3644529Z ================================================== 2021-05-19T20:40:27.3645097Z downloaded 39 KB 2021-05-19T20:40:27.3645418Z 2021-05-19T20:40:27.3684502Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-19T20:40:27.6225237Z Content type 'binary/octet-stream' length 357387 bytes (349 KB) 2021-05-19T20:40:27.6299451Z ================================================== 2021-05-19T20:40:27.6300230Z downloaded 349 KB 2021-05-19T20:40:27.6300558Z 2021-05-19T20:40:27.6338444Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-05-19T20:40:27.8831911Z Content type 'binary/octet-stream' length 436191 bytes (425 KB) 2021-05-19T20:40:27.8886560Z ================================================== 2021-05-19T20:40:27.8887622Z downloaded 425 KB 2021-05-19T20:40:27.8888157Z 2021-05-19T20:40:27.8923670Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-05-19T20:40:28.4433470Z Content type 'binary/octet-stream' length 42530 bytes (41 KB) 2021-05-19T20:40:28.4441403Z ================================================== 2021-05-19T20:40:28.4442251Z downloaded 41 KB 2021-05-19T20:40:28.4442749Z 2021-05-19T20:40:28.4490012Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-19T20:40:28.8363228Z Content type 'binary/octet-stream' length 617914 bytes (603 KB) 2021-05-19T20:40:28.8433450Z ================================================== 2021-05-19T20:40:28.8434034Z downloaded 603 KB 2021-05-19T20:40:28.8434361Z 2021-05-19T20:40:28.8473064Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-19T20:40:29.1005833Z Content type 'binary/octet-stream' length 331309 bytes (323 KB) 2021-05-19T20:40:29.1066986Z ================================================== 2021-05-19T20:40:29.1067600Z downloaded 323 KB 2021-05-19T20:40:29.1067927Z 2021-05-19T20:40:29.1106682Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-19T20:40:29.6443868Z Content type 'binary/octet-stream' length 230462 bytes (225 KB) 2021-05-19T20:40:29.6502101Z ================================================== 2021-05-19T20:40:29.6502709Z downloaded 225 KB 2021-05-19T20:40:29.6503017Z 2021-05-19T20:40:29.6542193Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/highr_0.9.tar.gz' 2021-05-19T20:40:30.3872981Z Content type 'binary/octet-stream' length 38854 bytes (37 KB) 2021-05-19T20:40:30.3874504Z ================================================== 2021-05-19T20:40:30.3875360Z downloaded 37 KB 2021-05-19T20:40:30.3875932Z 2021-05-19T20:40:30.3922519Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-05-19T20:40:30.6443726Z Content type 'binary/octet-stream' length 204523 bytes (199 KB) 2021-05-19T20:40:30.6478901Z ================================================== 2021-05-19T20:40:30.6479491Z downloaded 199 KB 2021-05-19T20:40:30.6479800Z 2021-05-19T20:40:30.6520371Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.2.tar.gz' 2021-05-19T20:40:31.1761659Z Content type 'binary/octet-stream' length 2944002 bytes (2.8 MB) 2021-05-19T20:40:31.2144359Z ================================================== 2021-05-19T20:40:31.2145044Z downloaded 2.8 MB 2021-05-19T20:40:31.2145374Z 2021-05-19T20:40:31.2186062Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-19T20:40:31.4752052Z Content type 'binary/octet-stream' length 4153785 bytes (4.0 MB) 2021-05-19T20:40:31.5499799Z ================================================== 2021-05-19T20:40:31.5500884Z downloaded 4.0 MB 2021-05-19T20:40:31.5501496Z 2021-05-19T20:40:31.5537992Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-19T20:40:32.0787776Z Content type 'binary/octet-stream' length 1400044 bytes (1.3 MB) 2021-05-19T20:40:32.0937214Z ================================================== 2021-05-19T20:40:32.0937818Z downloaded 1.3 MB 2021-05-19T20:40:32.0938141Z 2021-05-19T20:40:32.0979275Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-19T20:40:32.3505714Z Content type 'binary/octet-stream' length 491519 bytes (479 KB) 2021-05-19T20:40:32.3581230Z ================================================== 2021-05-19T20:40:32.3581864Z downloaded 479 KB 2021-05-19T20:40:32.3582190Z 2021-05-19T20:40:32.3625255Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-19T20:40:32.8887551Z Content type 'binary/octet-stream' length 109751 bytes (107 KB) 2021-05-19T20:40:32.8916679Z ================================================== 2021-05-19T20:40:32.8917245Z downloaded 107 KB 2021-05-19T20:40:32.8917572Z 2021-05-19T20:40:32.8959480Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-19T20:40:33.7446625Z Content type 'binary/octet-stream' length 22104 bytes (21 KB) 2021-05-19T20:40:33.7448894Z ================================================== 2021-05-19T20:40:33.7450153Z downloaded 21 KB 2021-05-19T20:40:33.7451139Z 2021-05-19T20:40:33.7502272Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-19T20:40:34.0045679Z Content type 'binary/octet-stream' length 44271 bytes (43 KB) 2021-05-19T20:40:34.0055865Z ================================================== 2021-05-19T20:40:34.0057315Z downloaded 43 KB 2021-05-19T20:40:34.0057944Z 2021-05-19T20:40:34.0097656Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-19T20:40:34.2649637Z Content type 'binary/octet-stream' length 34357 bytes (33 KB) 2021-05-19T20:40:34.2652036Z ================================================== 2021-05-19T20:40:34.2653260Z downloaded 33 KB 2021-05-19T20:40:34.2654107Z 2021-05-19T20:40:34.2691141Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-19T20:40:34.5630534Z Content type 'binary/octet-stream' length 140417 bytes (137 KB) 2021-05-19T20:40:34.5682914Z ================================================== 2021-05-19T20:40:34.5683500Z downloaded 137 KB 2021-05-19T20:40:34.5683826Z 2021-05-19T20:40:34.5723698Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz' 2021-05-19T20:40:34.9802554Z Content type 'binary/octet-stream' length 3551345 bytes (3.4 MB) 2021-05-19T20:40:35.0013376Z ================================================== 2021-05-19T20:40:35.0014470Z downloaded 3.4 MB 2021-05-19T20:40:35.0015025Z 2021-05-19T20:40:35.0051038Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-19T20:40:35.2642177Z Content type 'binary/octet-stream' length 66148 bytes (64 KB) 2021-05-19T20:40:35.2657662Z ================================================== 2021-05-19T20:40:35.2658878Z downloaded 64 KB 2021-05-19T20:40:35.2659206Z 2021-05-19T20:40:35.2699937Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-19T20:40:35.8435505Z Content type 'binary/octet-stream' length 1374258 bytes (1.3 MB) 2021-05-19T20:40:35.8629052Z ================================================== 2021-05-19T20:40:35.8629903Z downloaded 1.3 MB 2021-05-19T20:40:35.8630346Z 2021-05-19T20:40:35.8671262Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-19T20:40:36.4071422Z Content type 'binary/octet-stream' length 132329 bytes (129 KB) 2021-05-19T20:40:36.4124876Z ================================================== 2021-05-19T20:40:36.4125841Z downloaded 129 KB 2021-05-19T20:40:36.4126393Z 2021-05-19T20:40:36.4173475Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-19T20:40:37.0234156Z Content type 'binary/octet-stream' length 394833 bytes (385 KB) 2021-05-19T20:40:37.0288429Z ================================================== 2021-05-19T20:40:37.0288992Z downloaded 385 KB 2021-05-19T20:40:37.0289320Z 2021-05-19T20:40:37.2991723Z * installing *binary* package ‘utf8’ ... 2021-05-19T20:40:37.3049032Z * DONE (utf8) 2021-05-19T20:40:37.5445186Z * installing *binary* package ‘pkgconfig’ ... 2021-05-19T20:40:37.5486015Z * DONE (pkgconfig) 2021-05-19T20:40:37.8079989Z * installing *binary* package ‘fansi’ ... 2021-05-19T20:40:37.8135287Z * DONE (fansi) 2021-05-19T20:40:38.1182267Z * installing *binary* package ‘diffobj’ ... 2021-05-19T20:40:38.1266983Z * DONE (diffobj) 2021-05-19T20:40:38.3932571Z * installing *binary* package ‘ps’ ... 2021-05-19T20:40:38.4001335Z * DONE (ps) 2021-05-19T20:40:38.6325179Z * installing *binary* package ‘praise’ ... 2021-05-19T20:40:38.6377534Z * DONE (praise) 2021-05-19T20:40:38.8790826Z * installing *binary* package ‘pkgload’ ... 2021-05-19T20:40:38.8854330Z * DONE (pkgload) 2021-05-19T20:40:39.1199966Z * installing *binary* package ‘evaluate’ ... 2021-05-19T20:40:39.1251419Z * DONE (evaluate) 2021-05-19T20:40:39.3637439Z * installing *binary* package ‘ellipsis’ ... 2021-05-19T20:40:39.3688739Z * DONE (ellipsis) 2021-05-19T20:40:39.6538798Z * installing *binary* package ‘digest’ ... 2021-05-19T20:40:39.6629080Z * DONE (digest) 2021-05-19T20:40:39.8940157Z * installing *binary* package ‘brio’ ... 2021-05-19T20:40:39.8993700Z * DONE (brio) 2021-05-19T20:40:40.2136499Z * installing *binary* package ‘xml2’ ... 2021-05-19T20:40:40.2194909Z * DONE (xml2) 2021-05-19T20:40:40.4867865Z * installing *binary* package ‘xfun’ ... 2021-05-19T20:40:40.4915928Z * DONE (xfun) 2021-05-19T20:40:41.0212825Z * installing *binary* package ‘stringi’ ... 2021-05-19T20:40:41.0331541Z * DONE (stringi) 2021-05-19T20:40:42.2752167Z * installing *binary* package ‘Rcpp’ ... 2021-05-19T20:40:42.3169692Z * DONE (Rcpp) 2021-05-19T20:40:42.6365121Z * installing *binary* package ‘commonmark’ ... 2021-05-19T20:40:42.6443491Z * DONE (commonmark) 2021-05-19T20:40:42.9298350Z * installing *binary* package ‘brew’ ... 2021-05-19T20:40:42.9385426Z * DONE (brew) 2021-05-19T20:40:43.1737382Z * installing *binary* package ‘sessioninfo’ ... 2021-05-19T20:40:43.1794972Z * DONE (sessioninfo) 2021-05-19T20:40:43.4179438Z * installing *binary* package ‘prettyunits’ ... 2021-05-19T20:40:43.4231830Z * DONE (prettyunits) 2021-05-19T20:40:43.8224449Z * installing *binary* package ‘vctrs’ ... 2021-05-19T20:40:43.8322833Z * DONE (vctrs) 2021-05-19T20:40:44.1042990Z * installing *binary* package ‘processx’ ... 2021-05-19T20:40:44.1094060Z * DONE (processx) 2021-05-19T20:40:44.3809951Z * installing *binary* package ‘markdown’ ... 2021-05-19T20:40:44.3862967Z * DONE (markdown) 2021-05-19T20:40:44.6242676Z * installing *binary* package ‘highr’ ... 2021-05-19T20:40:44.6298383Z * DONE (highr) 2021-05-19T20:40:44.8941366Z * installing *binary* package ‘stringr’ ... 2021-05-19T20:40:44.9008291Z * DONE (stringr) 2021-05-19T20:40:45.1343203Z * installing *binary* package ‘rversions’ ... 2021-05-19T20:40:45.1394255Z * DONE (rversions) 2021-05-19T20:40:45.4733316Z * installing *binary* package ‘pillar’ ... 2021-05-19T20:40:45.4818148Z * DONE (pillar) 2021-05-19T20:40:45.7455819Z * installing *binary* package ‘callr’ ... 2021-05-19T20:40:45.7525232Z * DONE (callr) 2021-05-19T20:40:46.1823073Z * installing *binary* package ‘knitr’ ... 2021-05-19T20:40:46.1964582Z * DONE (knitr) 2021-05-19T20:40:46.4294453Z * installing *binary* package ‘xopen’ ... 2021-05-19T20:40:46.4350704Z * DONE (xopen) 2021-05-19T20:40:46.7704865Z * installing *binary* package ‘tibble’ ... 2021-05-19T20:40:46.7788000Z * DONE (tibble) 2021-05-19T20:40:47.0161303Z * installing *binary* package ‘pkgbuild’ ... 2021-05-19T20:40:47.0220245Z * DONE (pkgbuild) 2021-05-19T20:40:47.4115782Z * installing *binary* package ‘roxygen2’ ... 2021-05-19T20:40:47.4223856Z * DONE (roxygen2) 2021-05-19T20:40:47.6537860Z * installing *binary* package ‘rematch2’ ... 2021-05-19T20:40:47.6576544Z * DONE (rematch2) 2021-05-19T20:40:47.8955435Z * installing *binary* package ‘rcmdcheck’ ... 2021-05-19T20:40:47.8999917Z * DONE (rcmdcheck) 2021-05-19T20:40:48.1368590Z * installing *binary* package ‘waldo’ ... 2021-05-19T20:40:48.1424097Z * DONE (waldo) 2021-05-19T20:40:48.8178787Z * installing *binary* package ‘testthat’ ... 2021-05-19T20:40:48.8332972Z * DONE (testthat) 2021-05-19T20:40:49.1008647Z * installing *binary* package ‘devtools’ ... 2021-05-19T20:40:49.1072572Z * DONE (devtools) 2021-05-19T20:40:49.1132266Z 2021-05-19T20:40:49.1133353Z The downloaded source packages are in 2021-05-19T20:40:49.1134890Z ‘/tmp/RtmpP5xPeZ/downloaded_packages’ 2021-05-19T20:40:49.1795165Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-19T20:40:50.0924631Z 2021-05-19T20:40:50.4141365Z 2021-05-19T20:40:50.4161704Z checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf50472dbf/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-19T20:40:50.4232554Z 2021-05-19T20:40:50.4234320Z ✔ checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf50472dbf/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-19T20:40:50.4341806Z 2021-05-19T20:40:50.4443967Z 2021-05-19T20:40:50.4445227Z ─ preparing ‘desc’: 2021-05-19T20:40:50.4453450Z 2021-05-19T20:40:50.4481194Z 2021-05-19T20:40:50.4482609Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:40:50.5177786Z 2021-05-19T20:40:50.5221280Z 2021-05-19T20:40:50.5223011Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:40:50.5229427Z 2021-05-19T20:40:50.5252626Z 2021-05-19T20:40:50.5253860Z ─ checking for empty or unneeded directories 2021-05-19T20:40:50.5255183Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:40:50.5305160Z 2021-05-19T20:40:50.5327491Z 2021-05-19T20:40:50.5328655Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-19T20:40:50.6503734Z 2021-05-19T20:40:50.6504810Z 2021-05-19T20:40:50.6505314Z 2021-05-19T20:40:50.6621755Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:40:50.6622861Z (as ‘lib’ is unspecified) 2021-05-19T20:40:50.9932448Z * installing *source* package ‘desc’ ... 2021-05-19T20:40:50.9973397Z ** using staged installation 2021-05-19T20:40:51.0164223Z ** R 2021-05-19T20:40:51.0306718Z ** inst 2021-05-19T20:40:51.0323543Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:52.6959645Z ** help 2021-05-19T20:40:52.8356057Z *** installing help indices 2021-05-19T20:40:52.9304795Z ** building package indices 2021-05-19T20:40:53.2279025Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:53.4395077Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:53.6802223Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:53.6803602Z * DONE (desc) 2021-05-19T20:40:53.9018619Z 2021-05-19T20:40:53.9020415Z 2021-05-19T20:40:53.9031713Z checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf2283581a/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-19T20:40:53.9032962Z 2021-05-19T20:40:53.9038011Z checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf2283581a/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-19T20:40:53.9039435Z 2021-05-19T20:40:53.9047082Z checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf2283581a/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... OK 2021-05-19T20:40:53.9079448Z 2021-05-19T20:40:53.9081473Z ✔ checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf2283581a/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-19T20:40:53.9180429Z 2021-05-19T20:40:53.9188437Z 2021-05-19T20:40:53.9190564Z ─ preparing ‘ghtravis’: 2021-05-19T20:40:53.9200616Z 2021-05-19T20:40:53.9202884Z 2021-05-19T20:40:53.9281624Z checking DESCRIPTION meta-information ... 2021-05-19T20:40:53.9310965Z 2021-05-19T20:40:53.9313415Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:40:53.9723771Z 2021-05-19T20:40:53.9765259Z 2021-05-19T20:40:53.9768294Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:40:53.9778156Z 2021-05-19T20:40:53.9804464Z 2021-05-19T20:40:53.9806866Z ─ checking for empty or unneeded directories 2021-05-19T20:40:53.9810364Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:40:53.9874435Z 2021-05-19T20:40:53.9901435Z 2021-05-19T20:40:53.9903654Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-19T20:40:54.0130435Z 2021-05-19T20:40:54.0134104Z 2021-05-19T20:40:54.0136730Z 2021-05-19T20:40:54.0533356Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:40:54.0534938Z (as ‘lib’ is unspecified) 2021-05-19T20:40:54.3164075Z * installing *source* package ‘ghtravis’ ... 2021-05-19T20:40:54.3166378Z ** using staged installation 2021-05-19T20:40:54.3325709Z ** R 2021-05-19T20:40:54.3419430Z ** inst 2021-05-19T20:40:54.3428712Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:55.6968814Z ** help 2021-05-19T20:40:55.7597451Z *** installing help indices 2021-05-19T20:40:55.8091403Z ** building package indices 2021-05-19T20:40:56.0628431Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:56.8255898Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:57.5822863Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:57.5832948Z * DONE (ghtravis) 2021-05-19T20:40:57.5929384Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:40:57.7530885Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-19T20:40:58.7501033Z 2021-05-19T20:40:58.7503102Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-19T20:40:58.7504453Z generics (NA -> 0.1.0) [CRAN] 2021-05-19T20:40:58.7505677Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-19T20:40:58.7506874Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-19T20:40:58.7508086Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-19T20:40:58.7510000Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-19T20:40:58.7512726Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:40:58.7514553Z (as ‘lib’ is unspecified) 2021-05-19T20:41:14.4902427Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-19T20:41:15.0446791Z Content type 'binary/octet-stream' length 198868 bytes (194 KB) 2021-05-19T20:41:15.0484214Z ================================================== 2021-05-19T20:41:15.0485908Z downloaded 194 KB 2021-05-19T20:41:15.0486852Z 2021-05-19T20:41:15.0521021Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-19T20:41:15.3025434Z Content type 'binary/octet-stream' length 68868 bytes (67 KB) 2021-05-19T20:41:15.3042520Z ================================================== 2021-05-19T20:41:15.3044208Z downloaded 67 KB 2021-05-19T20:41:15.3045146Z 2021-05-19T20:41:15.3081753Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-19T20:41:15.8360881Z Content type 'binary/octet-stream' length 195847 bytes (191 KB) 2021-05-19T20:41:15.8406232Z ================================================== 2021-05-19T20:41:15.8406845Z downloaded 191 KB 2021-05-19T20:41:15.8407171Z 2021-05-19T20:41:15.8448541Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-19T20:41:16.0938992Z Content type 'binary/octet-stream' length 1245501 bytes (1.2 MB) 2021-05-19T20:41:16.1036785Z ================================================== 2021-05-19T20:41:16.1037375Z downloaded 1.2 MB 2021-05-19T20:41:16.1037702Z 2021-05-19T20:41:16.1077642Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-19T20:41:16.4910447Z Content type 'binary/octet-stream' length 1083669 bytes (1.0 MB) 2021-05-19T20:41:16.5014672Z ================================================== 2021-05-19T20:41:16.5015306Z downloaded 1.0 MB 2021-05-19T20:41:16.5015637Z 2021-05-19T20:41:16.7543778Z * installing *binary* package ‘tidyselect’ ... 2021-05-19T20:41:16.7613507Z * DONE (tidyselect) 2021-05-19T20:41:17.0027455Z * installing *binary* package ‘generics’ ... 2021-05-19T20:41:17.0082036Z * DONE (generics) 2021-05-19T20:41:17.2865727Z * installing *binary* package ‘cpp11’ ... 2021-05-19T20:41:17.2939484Z * DONE (cpp11) 2021-05-19T20:41:17.6520451Z * installing *binary* package ‘dplyr’ ... 2021-05-19T20:41:17.6598369Z * DONE (dplyr) 2021-05-19T20:41:18.0051810Z * installing *binary* package ‘tidyr’ ... 2021-05-19T20:41:18.0146260Z * DONE (tidyr) 2021-05-19T20:41:18.0215707Z 2021-05-19T20:41:18.0216861Z The downloaded source packages are in 2021-05-19T20:41:18.0218475Z ‘/tmp/RtmpP5xPeZ/downloaded_packages’ 2021-05-19T20:41:18.2341079Z 2021-05-19T20:41:18.2357867Z checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf76d0a5ec/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-19T20:41:18.2391966Z 2021-05-19T20:41:18.2393872Z ✔ checking for file ‘/tmp/RtmpP5xPeZ/remotes6ebf76d0a5ec/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-19T20:41:18.2500444Z 2021-05-19T20:41:18.2501368Z 2021-05-19T20:41:18.2502489Z ─ preparing ‘aghast’: 2021-05-19T20:41:18.2503064Z 2021-05-19T20:41:18.2503613Z 2021-05-19T20:41:18.2582199Z checking DESCRIPTION meta-information ... 2021-05-19T20:41:18.2608435Z 2021-05-19T20:41:18.2610590Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:41:18.2903742Z 2021-05-19T20:41:18.2928561Z 2021-05-19T20:41:18.2931418Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:41:18.2953192Z ─ checking for empty or unneeded directories 2021-05-19T20:41:18.2955779Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:41:18.3011775Z 2021-05-19T20:41:18.3051299Z 2021-05-19T20:41:18.3055325Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-19T20:41:18.3143717Z 2021-05-19T20:41:18.3146150Z 2021-05-19T20:41:18.3146564Z 2021-05-19T20:41:18.3231073Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:41:18.3232434Z (as ‘lib’ is unspecified) 2021-05-19T20:41:18.5669280Z * installing *source* package ‘aghast’ ... 2021-05-19T20:41:18.5672531Z ** using staged installation 2021-05-19T20:41:18.5854101Z ** R 2021-05-19T20:41:18.5917166Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:41:19.0780675Z ** help 2021-05-19T20:41:19.1092952Z *** installing help indices 2021-05-19T20:41:19.1342978Z ** building package indices 2021-05-19T20:41:19.3649392Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:41:19.5670341Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:19.7662492Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:19.7674378Z * DONE (aghast) 2021-05-19T20:41:19.7774462Z Installing 1 packages: covr 2021-05-19T20:41:19.7783629Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:41:19.7784910Z (as ‘lib’ is unspecified) 2021-05-19T20:41:35.5841013Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-19T20:41:35.5842798Z 2021-05-19T20:41:35.5853684Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-19T20:41:35.8351910Z Content type 'binary/octet-stream' length 163844 bytes (160 KB) 2021-05-19T20:41:35.8387334Z ================================================== 2021-05-19T20:41:35.8389022Z downloaded 160 KB 2021-05-19T20:41:35.8389975Z 2021-05-19T20:41:35.8424825Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-19T20:41:36.2208472Z Content type 'binary/octet-stream' length 121270 bytes (118 KB) 2021-05-19T20:41:36.2242658Z ================================================== 2021-05-19T20:41:36.2243295Z downloaded 118 KB 2021-05-19T20:41:36.2243825Z 2021-05-19T20:41:36.2288359Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-19T20:41:36.7013597Z Content type 'binary/octet-stream' length 289076 bytes (282 KB) 2021-05-19T20:41:36.7057021Z ================================================== 2021-05-19T20:41:36.7057541Z downloaded 282 KB 2021-05-19T20:41:36.7057873Z 2021-05-19T20:41:36.9605295Z * installing *binary* package ‘lazyeval’ ... 2021-05-19T20:41:36.9662005Z * DONE (lazyeval) 2021-05-19T20:41:37.2176253Z * installing *binary* package ‘rex’ ... 2021-05-19T20:41:37.2237759Z * DONE (rex) 2021-05-19T20:41:37.4959732Z * installing *binary* package ‘covr’ ... 2021-05-19T20:41:37.5011450Z * DONE (covr) 2021-05-19T20:41:37.5075707Z 2021-05-19T20:41:37.5076795Z The downloaded source packages are in 2021-05-19T20:41:37.5078234Z ‘/tmp/RtmpP5xPeZ/downloaded_packages’ 2021-05-19T20:41:37.5238809Z 2021-05-19T20:41:37.5276118Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-19T20:41:37.5276982Z remotes::install_deps(dependencies = TRUE) 2021-05-19T20:41:37.5277674Z remotes::install_cran("rcmdcheck") 2021-05-19T20:41:37.5278286Z remotes::install_cran("markdown") 2021-05-19T20:41:37.5286233Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:41:37.5286654Z env: 2021-05-19T20:41:37.5287432Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:41:37.5287922Z TIC_DEPLOY_KEY: 2021-05-19T20:41:37.5288782Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:41:37.5290726Z GITHUB_PAT: *** 2021-05-19T20:41:37.5291668Z COVERALLS_TOKEN: *** 2021-05-19T20:41:37.5292186Z continue-on-error: false 2021-05-19T20:41:37.5292686Z VDIFFR_RUN_TESTS: 2021-05-19T20:41:37.5293199Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:41:37.5293650Z TZ: UTC 2021-05-19T20:41:37.5294063Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:41:37.5294525Z NOT_CRAN: true 2021-05-19T20:41:37.5294909Z ##[endgroup] 2021-05-19T20:41:59.9556585Z tractor.base (NA -> 6f92c97af...) [GitHub] 2021-05-19T20:41:59.9558853Z dcm2niir (NA -> cd9c14f52...) [GitHub] 2021-05-19T20:41:59.9560595Z dcmtk (NA -> 491cbcea6...) [GitHub] 2021-05-19T20:41:59.9563597Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-19T20:41:59.9565075Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-19T20:41:59.9566427Z fslr (NA -> 2836c3181...) [GitHub] 2021-05-19T20:41:59.9567761Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-19T20:41:59.9569046Z ore (NA -> 1.6.3 ) [CRAN] 2021-05-19T20:41:59.9570340Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-19T20:41:59.9571635Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-19T20:41:59.9572855Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-19T20:41:59.9574120Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-19T20:41:59.9575456Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-19T20:41:59.9576806Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-19T20:41:59.9578139Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-19T20:41:59.9579396Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-19T20:41:59.9581283Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-19T20:41:59.9582579Z shades (NA -> 1.4.0 ) [CRAN] 2021-05-19T20:41:59.9583413Z reportr (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:41:59.9584158Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-19T20:42:00.9640699Z Downloading GitHub repo jonclayden/tractor@HEAD 2021-05-19T20:42:05.4122742Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/reportr.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/reportr 2021-05-19T20:42:05.4147059Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/reportr'... 2021-05-19T20:42:07.0053218Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/mmand.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/mmand 2021-05-19T20:42:07.0073265Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/mmand'... 2021-05-19T20:42:08.6775921Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNiftyReg.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg 2021-05-19T20:42:08.6800062Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg'... 2021-05-19T20:42:10.9008309Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/corpcor.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/corpcor 2021-05-19T20:42:10.9026562Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/corpcor'... 2021-05-19T20:42:11.9470097Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/Rcpp.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp 2021-05-19T20:42:11.9490533Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp'... 2021-05-19T20:42:13.7415444Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/ore.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/ore 2021-05-19T20:42:13.7439944Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/ore'... 2021-05-19T20:42:15.1038908Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/RcppEigen.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen 2021-05-19T20:42:15.1064436Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen'... 2021-05-19T20:42:19.5700972Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNifti.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RNifti 2021-05-19T20:42:19.5719840Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/RNifti'... 2021-05-19T20:42:21.0548288Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/divest.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/divest 2021-05-19T20:42:21.0573616Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/divest'... 2021-05-19T20:42:22.4795843Z Submodule 'dcm_qa' (https://github.com/neurolabusc/dcm_qa.git) registered for path 'tests/dcm_qa' 2021-05-19T20:42:22.4799256Z Submodule 'dcm_qa_nih' (https://github.com/neurolabusc/dcm_qa_nih.git) registered for path 'tests/dcm_qa_nih' 2021-05-19T20:42:22.4801123Z Submodule 'tests/dcm_qa_stc' (https://github.com/neurolabusc/dcm_qa_stc.git) registered for path 'tests/dcm_qa_stc' 2021-05-19T20:42:22.4803239Z Submodule 'tests/testthat/dcm_qa_uih' (https://github.com/neurolabusc/dcm_qa_uih.git) registered for path 'tests/dcm_qa_uih' 2021-05-19T20:42:22.4854540Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa'... 2021-05-19T20:42:31.1907518Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_nih'... 2021-05-19T20:42:33.0301549Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_stc'... 2021-05-19T20:42:39.3453944Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_uih'... 2021-05-19T20:42:49.3195277Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/yaml.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/yaml 2021-05-19T20:42:49.3226815Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/yaml'... 2021-05-19T20:42:49.6037133Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/loder.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/loder 2021-05-19T20:42:49.6056683Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/loder'... 2021-05-19T20:42:49.9010582Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/shades.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/shades 2021-05-19T20:42:49.9029950Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/shades'... 2021-05-19T20:42:50.1593180Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/jsonlite.git /tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite 2021-05-19T20:42:50.1617583Z Cloning into '/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite'... 2021-05-19T20:43:06.5220514Z ore (NA -> 1.6.3) [CRAN] 2021-05-19T20:43:06.5222543Z RNifti (NA -> 1.3.1) [CRAN] 2021-05-19T20:43:06.5225140Z shades (NA -> 1.4.0) [CRAN] 2021-05-19T20:43:06.5226341Z reportr (NA -> 1.3.0) [CRAN] 2021-05-19T20:43:06.5248913Z Installing 4 packages: ore, RNifti, shades, reportr 2021-05-19T20:43:06.5264198Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:43:06.5265786Z (as ‘lib’ is unspecified) 2021-05-19T20:43:22.0529780Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ore_1.6.3.tar.gz' 2021-05-19T20:43:23.3340854Z Content type 'binary/octet-stream' length 649799 bytes (634 KB) 2021-05-19T20:43:23.3432817Z ================================================== 2021-05-19T20:43:23.3433475Z downloaded 634 KB 2021-05-19T20:43:23.3433798Z 2021-05-19T20:43:23.3477569Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:43:23.7541438Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:43:23.7545130Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:43:23.7547240Z In addition: Warning message: 2021-05-19T20:43:23.7550472Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:43:23.7552500Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-19T20:43:23.7558283Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-19T20:43:23.7559535Z download of package ‘RNifti’ failed 2021-05-19T20:43:23.7572626Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/shades_1.4.0.tar.gz' 2021-05-19T20:43:24.3594536Z Content type 'binary/octet-stream' length 85953 bytes (83 KB) 2021-05-19T20:43:24.3596384Z ================================================== 2021-05-19T20:43:24.3597432Z downloaded 83 KB 2021-05-19T20:43:24.3598164Z 2021-05-19T20:43:24.3601011Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/reportr_1.3.0.tar.gz' 2021-05-19T20:43:25.2658224Z Content type 'binary/octet-stream' length 33780 bytes (32 KB) 2021-05-19T20:43:25.2660629Z ================================================== 2021-05-19T20:43:25.2661759Z downloaded 32 KB 2021-05-19T20:43:25.2662532Z 2021-05-19T20:43:25.5990554Z * installing *binary* package ‘ore’ ... 2021-05-19T20:43:25.6062768Z * DONE (ore) 2021-05-19T20:43:25.8407761Z * installing *binary* package ‘shades’ ... 2021-05-19T20:43:25.8464715Z * DONE (shades) 2021-05-19T20:43:26.0757168Z * installing *binary* package ‘reportr’ ... 2021-05-19T20:43:26.0810825Z * DONE (reportr) 2021-05-19T20:43:26.0865003Z 2021-05-19T20:43:26.0866884Z The downloaded source packages are in 2021-05-19T20:43:26.0868374Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:43:26.4152191Z 2021-05-19T20:43:26.4156195Z checking for file ‘/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ ... 2021-05-19T20:43:26.4223531Z 2021-05-19T20:43:26.4225669Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes7584513dd7aa/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ 2021-05-19T20:43:26.4314251Z 2021-05-19T20:43:26.4315021Z 2021-05-19T20:43:26.4316251Z ─ preparing ‘tractor.base’: 2021-05-19T20:43:26.4316767Z 2021-05-19T20:43:26.4317248Z 2021-05-19T20:43:26.4342907Z checking DESCRIPTION meta-information ... 2021-05-19T20:43:26.4369915Z 2021-05-19T20:43:26.4372078Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:43:26.4844517Z 2021-05-19T20:43:26.4898195Z 2021-05-19T20:43:26.4901053Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:43:26.4915121Z 2021-05-19T20:43:26.4943886Z 2021-05-19T20:43:26.4946590Z ─ checking for empty or unneeded directories 2021-05-19T20:43:26.4956958Z 2021-05-19T20:43:26.4959556Z 2021-05-19T20:43:26.4961598Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:43:26.5013558Z 2021-05-19T20:43:26.5045534Z 2021-05-19T20:43:26.5047616Z ─ building ‘tractor.base_3.3.4.tar.gz’ 2021-05-19T20:43:26.7763512Z 2021-05-19T20:43:26.7766603Z 2021-05-19T20:43:26.7768072Z 2021-05-19T20:43:26.7892166Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:43:26.7893094Z (as ‘lib’ is unspecified) 2021-05-19T20:43:27.1738886Z ERROR: dependency ‘RNifti’ is not available for package ‘tractor.base’ 2021-05-19T20:43:27.1743802Z * removing ‘/home/runner/work/_temp/Library/tractor.base’ 2021-05-19T20:43:27.6914945Z Downloading GitHub repo neuroconductor/dcm2niir@cd9c14f5234e08d13eea0319a25caec3812bb3ab 2021-05-19T20:43:28.7676687Z 2021-05-19T20:43:28.7678786Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-19T20:43:28.7679579Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-19T20:43:28.7680308Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-19T20:43:28.7684460Z Installing 3 packages: R.methodsS3, R.oo, R.utils 2021-05-19T20:43:28.7697300Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:43:28.7698257Z (as ‘lib’ is unspecified) 2021-05-19T20:43:44.9824135Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-19T20:43:45.2346115Z Content type 'binary/octet-stream' length 79818 bytes (77 KB) 2021-05-19T20:43:45.2365868Z ================================================== 2021-05-19T20:43:45.2367253Z downloaded 77 KB 2021-05-19T20:43:45.2368174Z 2021-05-19T20:43:45.2413138Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-19T20:43:45.6328600Z Content type 'binary/octet-stream' length 955204 bytes (932 KB) 2021-05-19T20:43:45.6451030Z ================================================== 2021-05-19T20:43:45.6451697Z downloaded 932 KB 2021-05-19T20:43:45.6452079Z 2021-05-19T20:43:45.6502043Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-19T20:43:46.3047112Z Content type 'binary/octet-stream' length 1404266 bytes (1.3 MB) 2021-05-19T20:43:46.3175116Z ================================================== 2021-05-19T20:43:46.3175764Z downloaded 1.3 MB 2021-05-19T20:43:46.3176095Z 2021-05-19T20:43:46.5568983Z * installing *binary* package ‘R.methodsS3’ ... 2021-05-19T20:43:46.5607285Z * DONE (R.methodsS3) 2021-05-19T20:43:46.8406838Z * installing *binary* package ‘R.oo’ ... 2021-05-19T20:43:46.8481053Z * DONE (R.oo) 2021-05-19T20:43:47.1502977Z * installing *binary* package ‘R.utils’ ... 2021-05-19T20:43:47.1574644Z * DONE (R.utils) 2021-05-19T20:43:47.1636471Z 2021-05-19T20:43:47.1637685Z The downloaded source packages are in 2021-05-19T20:43:47.1639243Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:43:47.3741068Z 2021-05-19T20:43:47.3760939Z checking for file ‘/tmp/RtmpeAalX0/remotes75842d0ecbd6/neuroconductor-dcm2niir-cd9c14f/DESCRIPTION’ ... 2021-05-19T20:43:47.3791834Z 2021-05-19T20:43:47.3802884Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes75842d0ecbd6/neuroconductor-dcm2niir-cd9c14f/DESCRIPTION’ 2021-05-19T20:43:47.3894707Z 2021-05-19T20:43:47.3895235Z 2021-05-19T20:43:47.3896161Z ─ preparing ‘dcm2niir’: 2021-05-19T20:43:47.3896502Z 2021-05-19T20:43:47.3896841Z 2021-05-19T20:43:47.3973223Z checking DESCRIPTION meta-information ... 2021-05-19T20:43:47.3999128Z 2021-05-19T20:43:47.4001360Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:43:47.4287925Z 2021-05-19T20:43:47.4323473Z 2021-05-19T20:43:47.4325987Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:43:47.4335507Z 2021-05-19T20:43:47.4360149Z 2021-05-19T20:43:47.4362289Z ─ checking for empty or unneeded directories 2021-05-19T20:43:47.4370881Z 2021-05-19T20:43:47.4396721Z 2021-05-19T20:43:47.4398935Z ─ building ‘dcm2niir_0.6.9.1.tar.gz’ 2021-05-19T20:43:47.4465716Z 2021-05-19T20:43:47.4468153Z 2021-05-19T20:43:47.4469590Z 2021-05-19T20:43:47.4861771Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:43:47.4862667Z (as ‘lib’ is unspecified) 2021-05-19T20:43:47.7198609Z * installing *source* package ‘dcm2niir’ ... 2021-05-19T20:43:47.7200995Z ** using staged installation 2021-05-19T20:43:47.7403824Z ** R 2021-05-19T20:43:47.7455365Z ** inst 2021-05-19T20:43:47.7464476Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:43:48.4940801Z ** help 2021-05-19T20:43:48.5207877Z *** installing help indices 2021-05-19T20:43:48.5417676Z ** building package indices 2021-05-19T20:43:48.7490210Z ** installing vignettes 2021-05-19T20:43:48.7531248Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:43:49.3069583Z ** testing if installed package can be loaded from final location 2021-05-19T20:43:49.8694038Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:43:49.8705484Z * DONE (dcm2niir) 2021-05-19T20:43:50.3776588Z Downloading GitHub repo neuroconductor/dcmtk@491cbcea629724ddf29fcf21643abe277a816723 2021-05-19T20:43:51.6625870Z 2021-05-19T20:43:51.6627371Z Installing 1 packages: lubridate 2021-05-19T20:43:51.6629322Z lubridate (NA -> 1.7.10) [CRAN] 2021-05-19T20:43:51.6634479Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:43:51.6636042Z (as ‘lib’ is unspecified) 2021-05-19T20:44:08.3721307Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lubridate_1.7.10.tar.gz' 2021-05-19T20:44:08.4054218Z Content type 'binary/octet-stream' length 2000143 bytes (1.9 MB) 2021-05-19T20:44:08.4220010Z ================================================== 2021-05-19T20:44:08.4221061Z downloaded 1.9 MB 2021-05-19T20:44:08.4221707Z 2021-05-19T20:44:08.8685307Z * installing *binary* package ‘lubridate’ ... 2021-05-19T20:44:08.8806247Z * DONE (lubridate) 2021-05-19T20:44:08.8883112Z 2021-05-19T20:44:08.8884052Z The downloaded source packages are in 2021-05-19T20:44:08.8885526Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:44:09.0965107Z 2021-05-19T20:44:09.0980140Z checking for file ‘/tmp/RtmpeAalX0/remotes75843ce9a5b4/neuroconductor-dcmtk-491cbce/DESCRIPTION’ ... 2021-05-19T20:44:09.1010347Z 2021-05-19T20:44:09.1012310Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes75843ce9a5b4/neuroconductor-dcmtk-491cbce/DESCRIPTION’ 2021-05-19T20:44:09.1177264Z 2021-05-19T20:44:09.1177756Z 2021-05-19T20:44:09.1178666Z ─ preparing ‘dcmtk’: 2021-05-19T20:44:09.1178990Z 2021-05-19T20:44:09.1179306Z 2021-05-19T20:44:09.1211584Z checking DESCRIPTION meta-information ... 2021-05-19T20:44:09.1236757Z 2021-05-19T20:44:09.1238223Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:44:09.1245722Z 2021-05-19T20:44:09.1270604Z 2021-05-19T20:44:09.1271938Z ─ running ‘cleanup’ 2021-05-19T20:44:09.1666568Z 2021-05-19T20:44:09.1708349Z 2021-05-19T20:44:09.1711054Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:44:09.1720810Z 2021-05-19T20:44:09.1753992Z 2021-05-19T20:44:09.1757946Z ─ checking for empty or unneeded directories 2021-05-19T20:44:09.1799415Z ─ building ‘dcmtk_0.6.8.1.tar.gz’ 2021-05-19T20:44:09.3225310Z 2021-05-19T20:44:09.3230498Z 2021-05-19T20:44:09.3233077Z 2021-05-19T20:44:09.3351367Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:44:09.3352800Z (as ‘lib’ is unspecified) 2021-05-19T20:44:09.6449267Z * installing *source* package ‘dcmtk’ ... 2021-05-19T20:44:09.6451614Z ** using staged installation 2021-05-19T20:44:09.6641314Z ** R 2021-05-19T20:44:09.6713041Z ** data 2021-05-19T20:44:09.6718285Z *** moving datasets to lazyload DB 2021-05-19T20:44:09.7167092Z ** inst 2021-05-19T20:44:09.7190234Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:10.9580623Z ** help 2021-05-19T20:44:11.0032928Z *** installing help indices 2021-05-19T20:44:11.0494912Z ** building package indices 2021-05-19T20:44:11.2962360Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:12.1932419Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:13.0870401Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:13.0880240Z * DONE (dcmtk) 2021-05-19T20:44:13.6238646Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-19T20:44:15.6066514Z 2021-05-19T20:44:15.6068349Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-19T20:44:15.6069191Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-19T20:44:15.6069935Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-19T20:44:15.6070680Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-19T20:44:15.6071424Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-19T20:44:15.6072141Z rticles (NA -> 0.19 ) [CRAN] 2021-05-19T20:44:15.6072854Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-19T20:44:15.6073576Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-19T20:44:16.1845691Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-19T20:44:17.3558707Z 2021-05-19T20:44:17.5637463Z 2021-05-19T20:44:17.5641226Z checking for file ‘/tmp/RtmpeAalX0/remotes758433c27024/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-19T20:44:17.5688280Z 2021-05-19T20:44:17.5690360Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes758433c27024/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-19T20:44:17.5796524Z 2021-05-19T20:44:17.5838533Z 2021-05-19T20:44:17.5839966Z ─ preparing ‘RNifti’: 2021-05-19T20:44:17.5840692Z 2021-05-19T20:44:17.5841237Z 2021-05-19T20:44:17.5959727Z checking DESCRIPTION meta-information ... 2021-05-19T20:44:17.5987797Z 2021-05-19T20:44:17.5990043Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:44:17.6015675Z ─ cleaning src 2021-05-19T20:44:17.6025017Z 2021-05-19T20:44:17.6056746Z 2021-05-19T20:44:17.6057909Z ─ running ‘cleanup’ 2021-05-19T20:44:17.6571860Z 2021-05-19T20:44:17.6605269Z 2021-05-19T20:44:17.6608035Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:44:17.7001703Z 2021-05-19T20:44:17.7048958Z 2021-05-19T20:44:17.7053081Z ─ checking for empty or unneeded directories 2021-05-19T20:44:17.7071603Z 2021-05-19T20:44:17.7114680Z 2021-05-19T20:44:17.7116957Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-19T20:44:18.0453468Z 2021-05-19T20:44:18.0458789Z 2021-05-19T20:44:18.0462282Z 2021-05-19T20:44:18.0595838Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:44:18.0597509Z (as ‘lib’ is unspecified) 2021-05-19T20:44:18.4304403Z * installing *source* package ‘RNifti’ ... 2021-05-19T20:44:18.4306561Z ** using staged installation 2021-05-19T20:44:18.4490660Z ** libs 2021-05-19T20:44:18.4562021Z 2021-05-19T20:44:18.4566301Z g++ -std=gnu++14 -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-19T20:44:38.8872241Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-19T20:44:38.9948076Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-19T20:44:39.1023477Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-19T20:44:39.1456494Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-19T20:44:39.2706026Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-19T20:44:39.8331151Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-19T20:44:39.8821647Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-19T20:44:40.0219174Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-19T20:44:40.1986953Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-19T20:44:40.3508427Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-19T20:44:40.6237996Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-19T20:44:40.7541073Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-19T20:44:41.3384618Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-19T20:44:41.4532231Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-19T20:44:41.8005026Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-19T20:44:41.8414863Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-19T20:44:41.8927752Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-19T20:44:41.9892108Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-19T20:44:43.2792418Z gcc -I"/opt/R/4.1.0/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-19T20:44:45.8998888Z g++ -std=gnu++14 -shared -L/opt/R/4.1.0/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/4.1.0/lib/R/lib -lR 2021-05-19T20:44:46.1198865Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-19T20:44:46.1340370Z ** R 2021-05-19T20:44:46.1426823Z ** inst 2021-05-19T20:44:46.1458358Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:47.0363946Z ** help 2021-05-19T20:44:47.0940680Z *** installing help indices 2021-05-19T20:44:47.1322531Z ** building package indices 2021-05-19T20:44:47.3795821Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:47.6957127Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:47.8587401Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:48.1666410Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:48.1682853Z * DONE (RNifti) 2021-05-19T20:44:48.1849856Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-19T20:44:48.1858703Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:44:48.1860113Z (as ‘lib’ is unspecified) 2021-05-19T20:45:04.4280360Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-19T20:45:04.6783564Z Content type 'binary/octet-stream' length 38946 bytes (38 KB) 2021-05-19T20:45:04.6785132Z ================================================== 2021-05-19T20:45:04.6785866Z downloaded 38 KB 2021-05-19T20:45:04.6786383Z 2021-05-19T20:45:04.6819435Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-19T20:45:04.9342656Z Content type 'binary/octet-stream' length 117103 bytes (114 KB) 2021-05-19T20:45:04.9366167Z ================================================== 2021-05-19T20:45:04.9366744Z downloaded 114 KB 2021-05-19T20:45:04.9367064Z 2021-05-19T20:45:04.9408188Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-19T20:45:05.1951855Z Content type 'binary/octet-stream' length 236488 bytes (230 KB) 2021-05-19T20:45:05.1985684Z ================================================== 2021-05-19T20:45:05.1986262Z downloaded 230 KB 2021-05-19T20:45:05.1986581Z 2021-05-19T20:45:05.2098069Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-19T20:45:05.4592865Z Content type 'binary/octet-stream' length 3650634 bytes (3.5 MB) 2021-05-19T20:45:05.4812764Z ================================================== 2021-05-19T20:45:05.4813909Z downloaded 3.5 MB 2021-05-19T20:45:05.4814465Z 2021-05-19T20:45:05.4853000Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-19T20:45:06.1064100Z Content type 'binary/octet-stream' length 1675482 bytes (1.6 MB) 2021-05-19T20:45:06.1285512Z ================================================== 2021-05-19T20:45:06.1286602Z downloaded 1.6 MB 2021-05-19T20:45:06.1287130Z 2021-05-19T20:45:06.1325772Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-19T20:45:06.3875034Z Content type 'binary/octet-stream' length 60534 bytes (59 KB) 2021-05-19T20:45:06.3891373Z ================================================== 2021-05-19T20:45:06.3893049Z downloaded 59 KB 2021-05-19T20:45:06.3893995Z 2021-05-19T20:45:06.3934033Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-19T20:45:06.6544756Z Content type 'binary/octet-stream' length 35035 bytes (34 KB) 2021-05-19T20:45:06.6546246Z ================================================== 2021-05-19T20:45:06.6547150Z downloaded 34 KB 2021-05-19T20:45:06.6547716Z 2021-05-19T20:45:06.8870443Z * installing *binary* package ‘base64enc’ ... 2021-05-19T20:45:07.3919581Z * DONE (base64enc) 2021-05-19T20:45:07.3921101Z * installing *binary* package ‘tinytex’ ... 2021-05-19T20:45:07.3921788Z * DONE (tinytex) 2021-05-19T20:45:07.3922623Z * installing *binary* package ‘abind’ ... 2021-05-19T20:45:07.3923252Z * DONE (abind) 2021-05-19T20:45:07.6100012Z * installing *binary* package ‘bitops’ ... 2021-05-19T20:45:07.6154703Z * DONE (bitops) 2021-05-19T20:45:07.8549849Z * installing *binary* package ‘htmltools’ ... 2021-05-19T20:45:07.8592330Z * DONE (htmltools) 2021-05-19T20:45:08.5986222Z * installing *binary* package ‘rmarkdown’ ... 2021-05-19T20:45:08.6192932Z * DONE (rmarkdown) 2021-05-19T20:45:09.2501718Z * installing *binary* package ‘rticles’ ... 2021-05-19T20:45:09.2739142Z * DONE (rticles) 2021-05-19T20:45:09.2892705Z 2021-05-19T20:45:09.2894341Z The downloaded source packages are in 2021-05-19T20:45:09.2896606Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:45:09.5326874Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-19T20:45:09.5328595Z Use `force = TRUE` to force installation 2021-05-19T20:45:09.7418318Z 2021-05-19T20:45:09.7436031Z checking for file ‘/tmp/RtmpeAalX0/remotes75844c84abe3/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-19T20:45:09.7464391Z 2021-05-19T20:45:09.7466496Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes75844c84abe3/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-19T20:45:09.7740994Z 2021-05-19T20:45:09.7759910Z 2021-05-19T20:45:09.7762948Z ─ preparing ‘oro.nifti’: 2021-05-19T20:45:09.7887720Z checking DESCRIPTION meta-information ... 2021-05-19T20:45:09.7914864Z 2021-05-19T20:45:09.7917044Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:45:09.9420959Z 2021-05-19T20:45:09.9482824Z 2021-05-19T20:45:09.9487289Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:45:09.9502976Z 2021-05-19T20:45:09.9526051Z 2021-05-19T20:45:09.9528414Z ─ checking for empty or unneeded directories 2021-05-19T20:45:09.9531797Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-19T20:45:09.9535031Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-19T20:45:09.9621941Z 2021-05-19T20:45:09.9646749Z 2021-05-19T20:45:09.9648871Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-19T20:45:10.5157147Z 2021-05-19T20:45:10.5162449Z 2021-05-19T20:45:10.5165636Z 2021-05-19T20:45:10.5349013Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:45:10.5350032Z (as ‘lib’ is unspecified) 2021-05-19T20:45:11.1212150Z * installing *source* package ‘oro.nifti’ ... 2021-05-19T20:45:11.1213451Z ** using staged installation 2021-05-19T20:45:11.1420203Z ** R 2021-05-19T20:45:11.1917814Z ** demo 2021-05-19T20:45:11.1924752Z ** inst 2021-05-19T20:45:11.2002106Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:18.4715831Z ** help 2021-05-19T20:45:18.4716199Z 2021-05-19T20:45:18.4718040Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-19T20:45:18.8757270Z *** installing help indices 2021-05-19T20:45:19.1825512Z ** building package indices 2021-05-19T20:45:19.6484141Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:20.2786758Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:21.0523270Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:21.0610268Z * DONE (oro.nifti) 2021-05-19T20:45:21.5926264Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-19T20:45:24.5291849Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-19T20:45:24.5298137Z Installing 1 packages: matrixStats 2021-05-19T20:45:24.5307749Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:45:24.5309729Z (as ‘lib’ is unspecified) 2021-05-19T20:45:40.8072355Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-19T20:45:41.0850863Z Content type 'binary/octet-stream' length 2539430 bytes (2.4 MB) 2021-05-19T20:45:41.1286406Z ================================================== 2021-05-19T20:45:41.1286973Z downloaded 2.4 MB 2021-05-19T20:45:41.1291177Z 2021-05-19T20:45:41.8294959Z * installing *binary* package ‘matrixStats’ ... 2021-05-19T20:45:41.8488147Z * DONE (matrixStats) 2021-05-19T20:45:41.8585387Z 2021-05-19T20:45:41.8586665Z The downloaded source packages are in 2021-05-19T20:45:41.8588294Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:45:42.0643130Z 2021-05-19T20:45:42.0645679Z checking for file ‘/tmp/RtmpeAalX0/remotes7584316d577a/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-19T20:45:42.0693217Z 2021-05-19T20:45:42.0695395Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes7584316d577a/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-19T20:45:42.0940674Z 2021-05-19T20:45:42.0964696Z 2021-05-19T20:45:42.0967696Z ─ preparing ‘neurobase’: 2021-05-19T20:45:42.0980567Z 2021-05-19T20:45:42.0983515Z 2021-05-19T20:45:42.1066684Z checking DESCRIPTION meta-information ... 2021-05-19T20:45:42.1091261Z 2021-05-19T20:45:42.1093474Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:45:42.2021414Z 2021-05-19T20:45:42.2048466Z 2021-05-19T20:45:42.2051179Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:45:42.2063987Z 2021-05-19T20:45:42.2092580Z 2021-05-19T20:45:42.2094949Z ─ checking for empty or unneeded directories 2021-05-19T20:45:42.2103856Z 2021-05-19T20:45:42.2137483Z 2021-05-19T20:45:42.2144333Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-19T20:45:42.2869713Z 2021-05-19T20:45:42.2873132Z 2021-05-19T20:45:42.2874894Z 2021-05-19T20:45:42.2980341Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:45:42.2981667Z (as ‘lib’ is unspecified) 2021-05-19T20:45:42.6358325Z * installing *source* package ‘neurobase’ ... 2021-05-19T20:45:42.6360446Z ** using staged installation 2021-05-19T20:45:42.6552573Z ** R 2021-05-19T20:45:42.6776644Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:45.3379260Z ** help 2021-05-19T20:45:45.5225150Z *** installing help indices 2021-05-19T20:45:45.6472287Z ** building package indices 2021-05-19T20:45:45.9631384Z ** installing vignettes 2021-05-19T20:45:45.9698593Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:47.4054144Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:47.5474471Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:47.5500334Z * DONE (neurobase) 2021-05-19T20:45:48.0759667Z Downloading GitHub repo neuroconductor/fslr@2836c318184779a56162a0b4936ee42d348395a7 2021-05-19T20:45:51.6040885Z 2021-05-19T20:45:51.8129214Z 2021-05-19T20:45:51.8138880Z checking for file ‘/tmp/RtmpeAalX0/remotes758464cdcc01/neuroconductor-fslr-2836c31/DESCRIPTION’ ... 2021-05-19T20:45:51.8173106Z 2021-05-19T20:45:51.8175002Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes758464cdcc01/neuroconductor-fslr-2836c31/DESCRIPTION’ 2021-05-19T20:45:51.8461095Z 2021-05-19T20:45:51.8462391Z 2021-05-19T20:45:51.8464006Z ─ preparing ‘fslr’: 2021-05-19T20:45:51.8561643Z checking DESCRIPTION meta-information ... 2021-05-19T20:45:51.8589952Z 2021-05-19T20:45:51.8592348Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:45:52.0434683Z 2021-05-19T20:45:52.0465381Z 2021-05-19T20:45:52.0468312Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:45:52.0478383Z 2021-05-19T20:45:52.0505467Z 2021-05-19T20:45:52.0507654Z ─ checking for empty or unneeded directories 2021-05-19T20:45:52.0539371Z 2021-05-19T20:45:52.0569426Z 2021-05-19T20:45:52.0571500Z ─ building ‘fslr_2.25.0.tar.gz’ 2021-05-19T20:45:52.1902003Z 2021-05-19T20:45:52.1906844Z 2021-05-19T20:45:52.1909398Z 2021-05-19T20:45:52.2055237Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:45:52.2057707Z (as ‘lib’ is unspecified) 2021-05-19T20:45:52.6573249Z * installing *source* package ‘fslr’ ... 2021-05-19T20:45:52.6574483Z ** using staged installation 2021-05-19T20:45:52.6763683Z ** R 2021-05-19T20:45:52.7129619Z ** inst 2021-05-19T20:45:52.7142186Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:55.5249635Z ** help 2021-05-19T20:45:55.9552213Z *** installing help indices 2021-05-19T20:45:56.2804762Z ** building package indices 2021-05-19T20:45:56.7562227Z ** installing vignettes 2021-05-19T20:45:56.7706345Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:57.6101465Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:58.4993595Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:58.5018508Z * DONE (fslr) 2021-05-19T20:45:58.5228354Z Installing 14 packages: base64enc, ore, R.methodsS3, R.oo, bitops, RNifti, R.utils, matrixStats, abind, tinytex, htmltools, shades, reportr, rmarkdown 2021-05-19T20:45:58.5237544Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:45:58.5238710Z (as ‘lib’ is unspecified) 2021-05-19T20:46:14.4606213Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-19T20:46:16.1862860Z Content type 'binary/octet-stream' length 38946 bytes (38 KB) 2021-05-19T20:46:16.1866036Z ================================================== 2021-05-19T20:46:16.1866547Z downloaded 38 KB 2021-05-19T20:46:16.1866865Z 2021-05-19T20:46:16.1922306Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ore_1.6.3.tar.gz' 2021-05-19T20:46:16.4481053Z Content type 'binary/octet-stream' length 649799 bytes (634 KB) 2021-05-19T20:46:16.4554624Z ================================================== 2021-05-19T20:46:16.4555378Z downloaded 634 KB 2021-05-19T20:46:16.4555825Z 2021-05-19T20:46:16.4594906Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-19T20:46:16.9456571Z Content type 'binary/octet-stream' length 79818 bytes (77 KB) 2021-05-19T20:46:16.9474900Z ================================================== 2021-05-19T20:46:16.9476169Z downloaded 77 KB 2021-05-19T20:46:16.9476965Z 2021-05-19T20:46:16.9515312Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-19T20:46:17.4769449Z Content type 'binary/octet-stream' length 955204 bytes (932 KB) 2021-05-19T20:46:17.4864067Z ================================================== 2021-05-19T20:46:17.4864964Z downloaded 932 KB 2021-05-19T20:46:17.4865412Z 2021-05-19T20:46:17.4905119Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-19T20:46:18.0165036Z Content type 'binary/octet-stream' length 35035 bytes (34 KB) 2021-05-19T20:46:18.0166387Z ================================================== 2021-05-19T20:46:18.0167240Z downloaded 34 KB 2021-05-19T20:46:18.0167772Z 2021-05-19T20:46:18.0205147Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:46:18.5098951Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:46:18.5101339Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:46:18.5103898Z In addition: Warning messages: 2021-05-19T20:46:18.5104697Z 1: In i.p(...) : 2021-05-19T20:46:18.5106076Z installation of package ‘/tmp/RtmpeAalX0/file75843817be1/tractor.base_3.3.4.tar.gz’ had non-zero exit status 2021-05-19T20:46:18.5107275Z 2: In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:46:18.5109204Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-19T20:46:18.5110963Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-19T20:46:18.5112122Z download of package ‘RNifti’ failed 2021-05-19T20:46:18.5121239Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-19T20:46:18.7789416Z Content type 'binary/octet-stream' length 1404266 bytes (1.3 MB) 2021-05-19T20:46:18.7908080Z ================================================== 2021-05-19T20:46:18.7908701Z downloaded 1.3 MB 2021-05-19T20:46:18.7909049Z 2021-05-19T20:46:18.7964668Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-19T20:46:19.1733643Z Content type 'binary/octet-stream' length 2539430 bytes (2.4 MB) 2021-05-19T20:46:19.1939293Z ================================================== 2021-05-19T20:46:19.1940066Z downloaded 2.4 MB 2021-05-19T20:46:19.1940375Z 2021-05-19T20:46:19.1985417Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-19T20:46:19.4619765Z Content type 'binary/octet-stream' length 60534 bytes (59 KB) 2021-05-19T20:46:19.4635406Z ================================================== 2021-05-19T20:46:19.4636869Z downloaded 59 KB 2021-05-19T20:46:19.4638624Z 2021-05-19T20:46:19.4759814Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-19T20:46:20.8043429Z Content type 'binary/octet-stream' length 117103 bytes (114 KB) 2021-05-19T20:46:20.8080490Z ================================================== 2021-05-19T20:46:20.8082363Z downloaded 114 KB 2021-05-19T20:46:20.8083319Z 2021-05-19T20:46:20.8123602Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-19T20:46:21.1521679Z Content type 'binary/octet-stream' length 236488 bytes (230 KB) 2021-05-19T20:46:21.1575192Z ================================================== 2021-05-19T20:46:21.1575765Z downloaded 230 KB 2021-05-19T20:46:21.1576092Z 2021-05-19T20:46:21.1630570Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/shades_1.4.0.tar.gz' 2021-05-19T20:46:21.8834517Z Content type 'binary/octet-stream' length 85953 bytes (83 KB) 2021-05-19T20:46:21.8852273Z ================================================== 2021-05-19T20:46:21.8852844Z downloaded 83 KB 2021-05-19T20:46:21.8853166Z 2021-05-19T20:46:21.8896452Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/reportr_1.3.0.tar.gz' 2021-05-19T20:46:22.1356008Z Content type 'binary/octet-stream' length 33780 bytes (32 KB) 2021-05-19T20:46:22.1356871Z ================================================== 2021-05-19T20:46:22.1357365Z downloaded 32 KB 2021-05-19T20:46:22.1357665Z 2021-05-19T20:46:22.1406385Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-19T20:46:22.6281196Z Content type 'binary/octet-stream' length 3650634 bytes (3.5 MB) 2021-05-19T20:46:22.6484046Z ================================================== 2021-05-19T20:46:22.6484915Z downloaded 3.5 MB 2021-05-19T20:46:22.6485540Z 2021-05-19T20:46:22.8854881Z * installing *binary* package ‘base64enc’ ... 2021-05-19T20:46:22.8921803Z * DONE (base64enc) 2021-05-19T20:46:23.2245914Z * installing *binary* package ‘ore’ ... 2021-05-19T20:46:23.2335964Z * DONE (ore) 2021-05-19T20:46:23.4677328Z * installing *binary* package ‘R.methodsS3’ ... 2021-05-19T20:46:23.4752473Z * DONE (R.methodsS3) 2021-05-19T20:46:23.7062892Z * installing *binary* package ‘bitops’ ... 2021-05-19T20:46:23.7130498Z * DONE (bitops) 2021-05-19T20:46:24.4080244Z * installing *binary* package ‘matrixStats’ ... 2021-05-19T20:46:24.4265831Z * DONE (matrixStats) 2021-05-19T20:46:24.6751002Z * installing *binary* package ‘abind’ ... 2021-05-19T20:46:24.6821275Z * DONE (abind) 2021-05-19T20:46:24.9248097Z * installing *binary* package ‘tinytex’ ... 2021-05-19T20:46:24.9320109Z * DONE (tinytex) 2021-05-19T20:46:25.1746801Z * installing *binary* package ‘shades’ ... 2021-05-19T20:46:25.1816568Z * DONE (shades) 2021-05-19T20:46:25.4691842Z * installing *binary* package ‘R.oo’ ... 2021-05-19T20:46:25.4767833Z * DONE (R.oo) 2021-05-19T20:46:25.7258747Z * installing *binary* package ‘htmltools’ ... 2021-05-19T20:46:25.7326106Z * DONE (htmltools) 2021-05-19T20:46:25.9654289Z * installing *binary* package ‘reportr’ ... 2021-05-19T20:46:25.9720737Z * DONE (reportr) 2021-05-19T20:46:26.2741399Z * installing *binary* package ‘R.utils’ ... 2021-05-19T20:46:26.2829758Z * DONE (R.utils) 2021-05-19T20:46:27.0254525Z * installing *binary* package ‘rmarkdown’ ... 2021-05-19T20:46:27.0496723Z * DONE (rmarkdown) 2021-05-19T20:46:27.0707821Z 2021-05-19T20:46:27.0708963Z The downloaded source packages are in 2021-05-19T20:46:27.0710476Z ‘/tmp/RtmpeAalX0/downloaded_packages’ 2021-05-19T20:46:28.0570564Z Downloading GitHub repo jonclayden/tractor@HEAD 2021-05-19T20:46:30.6634927Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/reportr.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/reportr 2021-05-19T20:46:30.6664807Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/reportr'... 2021-05-19T20:46:31.0108081Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/mmand.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/mmand 2021-05-19T20:46:31.0134062Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/mmand'... 2021-05-19T20:46:31.4641347Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNiftyReg.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg 2021-05-19T20:46:31.4659740Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg'... 2021-05-19T20:46:31.9383613Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/corpcor.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/corpcor 2021-05-19T20:46:31.9403002Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/corpcor'... 2021-05-19T20:46:32.2410511Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/Rcpp.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp 2021-05-19T20:46:32.2434504Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp'... 2021-05-19T20:46:32.7880798Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/ore.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/ore 2021-05-19T20:46:32.7900052Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/ore'... 2021-05-19T20:46:33.1221364Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/RcppEigen.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen 2021-05-19T20:46:33.1246266Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen'... 2021-05-19T20:46:33.8772869Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNifti.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RNifti 2021-05-19T20:46:33.8793256Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/RNifti'... 2021-05-19T20:46:34.2465116Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/divest.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/divest 2021-05-19T20:46:34.2489820Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/divest'... 2021-05-19T20:46:34.5580342Z Submodule 'dcm_qa' (https://github.com/neurolabusc/dcm_qa.git) registered for path 'tests/dcm_qa' 2021-05-19T20:46:34.5582710Z Submodule 'dcm_qa_nih' (https://github.com/neurolabusc/dcm_qa_nih.git) registered for path 'tests/dcm_qa_nih' 2021-05-19T20:46:34.5584734Z Submodule 'tests/dcm_qa_stc' (https://github.com/neurolabusc/dcm_qa_stc.git) registered for path 'tests/dcm_qa_stc' 2021-05-19T20:46:34.5588629Z Submodule 'tests/testthat/dcm_qa_uih' (https://github.com/neurolabusc/dcm_qa_uih.git) registered for path 'tests/dcm_qa_uih' 2021-05-19T20:46:34.5634148Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa'... 2021-05-19T20:46:37.5489422Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_nih'... 2021-05-19T20:46:38.0248310Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_stc'... 2021-05-19T20:46:41.9460479Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_uih'... 2021-05-19T20:46:52.4004537Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/yaml.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/yaml 2021-05-19T20:46:52.4032267Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/yaml'... 2021-05-19T20:46:53.5444633Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/loder.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/loder 2021-05-19T20:46:53.5468914Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/loder'... 2021-05-19T20:46:54.7087979Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/shades.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/shades 2021-05-19T20:46:54.7113519Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/shades'... 2021-05-19T20:46:55.7801392Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/jsonlite.git /tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite 2021-05-19T20:46:55.7825450Z Cloning into '/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite'... 2021-05-19T20:46:57.9641378Z 2021-05-19T20:46:58.1697311Z 2021-05-19T20:46:58.1708937Z checking for file ‘/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ ... 2021-05-19T20:46:58.1749699Z 2021-05-19T20:46:58.1751178Z ✔ checking for file ‘/tmp/RtmpeAalX0/remotes75845f2a99dc/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ 2021-05-19T20:46:58.1860419Z 2021-05-19T20:46:58.1869845Z 2021-05-19T20:46:58.1871105Z ─ preparing ‘tractor.base’: 2021-05-19T20:46:58.1876587Z 2021-05-19T20:46:58.1877172Z 2021-05-19T20:46:58.1915868Z checking DESCRIPTION meta-information ... 2021-05-19T20:46:58.1937650Z 2021-05-19T20:46:58.1939077Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:46:58.2436919Z 2021-05-19T20:46:58.2477952Z 2021-05-19T20:46:58.2479757Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:46:58.2487062Z 2021-05-19T20:46:58.2517986Z 2021-05-19T20:46:58.2519472Z ─ checking for empty or unneeded directories 2021-05-19T20:46:58.2539872Z 2021-05-19T20:46:58.2543101Z 2021-05-19T20:46:58.2544102Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:46:58.2616839Z 2021-05-19T20:46:58.2641756Z 2021-05-19T20:46:58.2642773Z ─ building ‘tractor.base_3.3.4.tar.gz’ 2021-05-19T20:46:58.5352833Z 2021-05-19T20:46:58.5357611Z 2021-05-19T20:46:58.5360043Z 2021-05-19T20:46:58.5468025Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:46:58.5469189Z (as ‘lib’ is unspecified) 2021-05-19T20:46:58.9067566Z * installing *source* package ‘tractor.base’ ... 2021-05-19T20:46:58.9070185Z ** using staged installation 2021-05-19T20:46:58.9227932Z ** R 2021-05-19T20:46:58.9504194Z ** inst 2021-05-19T20:46:58.9546381Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:03.1335989Z 2021-05-19T20:47:03.1338169Z in method for ‘coerce’ with signature ‘"MriImage","nifti"’: no definition for class “nifti” 2021-05-19T20:47:03.1339949Z in method for ‘coerce’ with signature ‘"nifti","MriImage"’: no definition for class “nifti” 2021-05-19T20:47:03.1340701Z ** help 2021-05-19T20:47:03.2366121Z *** installing help indices 2021-05-19T20:47:03.3050969Z ** building package indices 2021-05-19T20:47:03.5918998Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:03.9742512Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:04.4312305Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:04.4363096Z * DONE (tractor.base) 2021-05-19T20:47:04.7282644Z Skipping install of 'dcm2niir' from a github remote, the SHA1 (cd9c14f5) has not changed since last install. 2021-05-19T20:47:04.7284444Z Use `force = TRUE` to force installation 2021-05-19T20:47:04.9867405Z Skipping install of 'dcmtk' from a github remote, the SHA1 (491cbcea) has not changed since last install. 2021-05-19T20:47:04.9869233Z Use `force = TRUE` to force installation 2021-05-19T20:47:05.2432756Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-19T20:47:05.2435147Z Use `force = TRUE` to force installation 2021-05-19T20:47:05.4843888Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-19T20:47:05.4846361Z Use `force = TRUE` to force installation 2021-05-19T20:47:05.7416797Z Skipping install of 'fslr' from a github remote, the SHA1 (2836c318) has not changed since last install. 2021-05-19T20:47:05.7418508Z Use `force = TRUE` to force installation 2021-05-19T20:47:05.7471043Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-19T20:47:05.7472763Z Use `force = TRUE` to force installation 2021-05-19T20:47:05.7487898Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-19T20:47:05.7489525Z Use `force = TRUE` to force installation 2021-05-19T20:47:06.2324898Z ##[group]Run options(width = 100) 2021-05-19T20:47:06.2325476Z options(width = 100) 2021-05-19T20:47:06.2326127Z pkgs <- installed.packages()[, "Package"] 2021-05-19T20:47:06.2326892Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-19T20:47:06.2334908Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:47:06.2335375Z env: 2021-05-19T20:47:06.2335864Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:47:06.2336379Z TIC_DEPLOY_KEY: 2021-05-19T20:47:06.2337288Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:47:06.2339194Z GITHUB_PAT: *** 2021-05-19T20:47:06.2340481Z COVERALLS_TOKEN: *** 2021-05-19T20:47:06.2341042Z continue-on-error: false 2021-05-19T20:47:06.2341576Z VDIFFR_RUN_TESTS: 2021-05-19T20:47:06.2342105Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:47:06.2342602Z TZ: UTC 2021-05-19T20:47:06.2343021Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:47:06.2343521Z NOT_CRAN: true 2021-05-19T20:47:06.2343946Z ##[endgroup] 2021-05-19T20:47:06.7398947Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-19T20:47:06.7400170Z setting value 2021-05-19T20:47:06.7401535Z version R version 4.1.0 (2021-05-18) 2021-05-19T20:47:06.7402529Z os Ubuntu 20.04.2 LTS 2021-05-19T20:47:06.7403804Z system x86_64, linux-gnu 2021-05-19T20:47:06.7404737Z ui X11 2021-05-19T20:47:06.7405647Z language (EN) 2021-05-19T20:47:06.7406894Z collate C.UTF-8 2021-05-19T20:47:06.7408128Z ctype C.UTF-8 2021-05-19T20:47:06.7409043Z tz UTC 2021-05-19T20:47:06.7410167Z date 2021-05-19 2021-05-19T20:47:06.7410706Z 2021-05-19T20:47:06.7412394Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-19T20:47:06.7413839Z package * version date lib source 2021-05-19T20:47:06.7415612Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7417440Z aghast 0.2.1 2021-05-19 [1] Github (muschellij2/aghast@0c3b853) 2021-05-19T20:47:06.7419265Z askpass 1.1 2019-01-13 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7421257Z base * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7422922Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7424562Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7426159Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7427758Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7429336Z brio 1.1.2 2021-04-23 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7431319Z cachem 1.0.5 2021-05-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7432933Z callr 3.7.0 2021-04-20 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7434562Z class 7.3-19 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7436148Z cli 2.5.0 2021-04-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7437721Z clipr 0.7.1 2020-10-08 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7439307Z cluster 2.1.2 2021-04-17 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7440968Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7442653Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7444606Z compiler 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7446287Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7447870Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7449454Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7451128Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7452788Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7454379Z datasets * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7456276Z dcm2niir 0.6.9.1 2021-05-19 [1] Github (neuroconductor/dcm2niir@cd9c14f) 2021-05-19T20:47:06.7458352Z dcmtk 0.6.8.1 2021-05-19 [1] Github (neuroconductor/dcmtk@491cbce) 2021-05-19T20:47:06.7470532Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7471777Z desc 1.2.0.9000 2021-05-19 [1] Github (muschellij2/desc@7be86f2) 2021-05-19T20:47:06.7472721Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7473594Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7474450Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7475285Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7476152Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7477039Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7477893Z fansi 0.4.2 2021-01-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7478749Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7479617Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7480439Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7481359Z fslr 2.25.0 2021-05-19 [1] Github (neuroconductor/fslr@2836c31) 2021-05-19T20:47:06.7482306Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7483149Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7483977Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7484908Z ghtravis 0.15.1 2021-05-19 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-19T20:47:06.7485863Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7486720Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7487756Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7488608Z graphics * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7489484Z grDevices * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7490357Z grid 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7491085Z highr 0.9 2021-04-16 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7491838Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7492734Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7493559Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7494483Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7495606Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7496545Z knitr 1.33 2021-04-24 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7497461Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7498378Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7499329Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7500490Z lubridate 1.7.10 2021-02-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7501422Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7502356Z markdown 1.1 2019-08-07 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7503265Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7504177Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7505126Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7506058Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7506982Z methods * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7507890Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7508845Z mime 0.10 2021-02-13 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7509827Z neurobase 1.30.1 2021-05-19 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-19T20:47:06.7510806Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7511627Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7512474Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7513323Z ore 1.6.3 2019-11-02 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7514278Z oro.nifti 0.10.3 2021-05-19 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-19T20:47:06.7515273Z parallel 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7528838Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7530135Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7531114Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7532069Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7533074Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7533973Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7535050Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7535890Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7536730Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7537605Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7538502Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7542566Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7543561Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7544629Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7545605Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7546549Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7547460Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7548398Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7549328Z reportr 1.3.0 2018-10-26 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7550223Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7551127Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7552037Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7553087Z RNifti 1.3.1 2021-05-19 [1] Github (neuroconductor/RNifti@929106d) 2021-05-19T20:47:06.7554122Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7555038Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7555970Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7556929Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7557860Z rticles 0.19 2021-03-04 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7558801Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7559769Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7560700Z shades 1.4.0 2019-08-02 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7561634Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7562566Z splines 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7563467Z stats * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7564366Z stats4 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7565279Z stringi 1.6.2 2021-05-17 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7566179Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7567109Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.1.0) 2021-05-19T20:47:06.7568014Z sys 3.4 2020-07-23 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7568963Z sysreqs 1.0.0.9000 2021-05-19 [1] Github (r-hub/sysreqs@f068afa) 2021-05-19T20:47:06.7569940Z tcltk 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7570846Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7571864Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7572898Z tic 0.10.0 2021-05-19 [1] Github (ropensci/tic@3b4dfb8) 2021-05-19T20:47:06.7573769Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7574632Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7575513Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7576343Z tools 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7577299Z tractor.base 3.3.4 2021-05-19 [1] Github (jonclayden/tractor@6f92c97) 2021-05-19T20:47:06.7578325Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7579168Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7580143Z utils * 4.1.0 2021-05-18 [2] local 2021-05-19T20:47:06.7580983Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7581805Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7582653Z whisker 0.4 2019-08-28 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7583500Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7584316Z xfun 0.23 2021-05-15 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7585141Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7585968Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7586807Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7587639Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.1.0) 2021-05-19T20:47:06.7587965Z 2021-05-19T20:47:06.7588434Z [1] /home/runner/work/_temp/Library 2021-05-19T20:47:06.7588982Z [2] /opt/R/4.1.0/lib/R/library 2021-05-19T20:47:06.7621937Z ##[group]Run Rscript -e 'tic::script()' 2021-05-19T20:47:06.7622533Z Rscript -e 'tic::script()' 2021-05-19T20:47:06.7622969Z ls -l check 2021-05-19T20:47:06.7691531Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-19T20:47:06.7692125Z env: 2021-05-19T20:47:06.7692645Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:47:06.7693201Z TIC_DEPLOY_KEY: 2021-05-19T20:47:06.7694135Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:47:06.7696071Z GITHUB_PAT: *** 2021-05-19T20:47:06.7697016Z COVERALLS_TOKEN: *** 2021-05-19T20:47:06.7697583Z continue-on-error: false 2021-05-19T20:47:06.7698140Z VDIFFR_RUN_TESTS: 2021-05-19T20:47:06.7698715Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:47:06.7699219Z TZ: UTC 2021-05-19T20:47:06.7700333Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:47:06.7700806Z NOT_CRAN: true 2021-05-19T20:47:06.7701247Z ##[endgroup] 2021-05-19T20:47:07.0573052Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:47:07.1959296Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-19T20:47:07.1960432Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-19T20:47:07.1961308Z timeout = Inf, check_dir = "check") 2021-05-19T20:47:07.2607784Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-19T20:47:07.4933039Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-19T20:47:07.5164989Z * preparing ‘dcmsort’: 2021-05-19T20:47:07.5270154Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:47:07.6167222Z * installing the package to build vignettes 2021-05-19T20:47:13.6426892Z * creating vignettes ... OK 2021-05-19T20:47:13.6707212Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:47:13.6709135Z * checking for empty or unneeded directories 2021-05-19T20:47:13.6720688Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:47:13.6817553Z * building ‘dcmsort_0.3.0.tar.gz’ 2021-05-19T20:47:13.6947195Z 2021-05-19T20:47:13.8222490Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-19T20:47:14.0578798Z * using log directory ‘/home/runner/work/dcmsort/dcmsort/check/dcmsort.Rcheck’ 2021-05-19T20:47:14.0580001Z * using R version 4.1.0 (2021-05-18) 2021-05-19T20:47:14.0580823Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-19T20:47:14.0581597Z * using session charset: UTF-8 2021-05-19T20:47:14.0820247Z * using option ‘--as-cran’ 2021-05-19T20:47:14.0905566Z * checking for file ‘dcmsort/DESCRIPTION’ ... OK 2021-05-19T20:47:14.0914259Z * checking extension type ... Package 2021-05-19T20:47:14.0915450Z * this is package ‘dcmsort’ version ‘0.3.0’ 2021-05-19T20:47:14.0916315Z * package encoding: UTF-8 2021-05-19T20:47:14.0946631Z * checking package namespace information ... OK 2021-05-19T20:47:30.1836023Z * checking package dependencies ... OK 2021-05-19T20:47:30.1850057Z * checking if this is a source package ... OK 2021-05-19T20:47:30.1851626Z * checking if there is a namespace ... OK 2021-05-19T20:47:30.4101626Z * checking for executable files ... OK 2021-05-19T20:47:30.4126206Z * checking for hidden files and directories ... OK 2021-05-19T20:47:30.4127221Z * checking for portable file names ... OK 2021-05-19T20:47:30.4128210Z * checking for sufficient/correct file permissions ... OK 2021-05-19T20:47:30.4147022Z * checking serialization versions ... OK 2021-05-19T20:47:35.6173836Z * checking whether package ‘dcmsort’ can be installed ... OK 2021-05-19T20:47:35.6236717Z * checking installed package size ... OK 2021-05-19T20:47:35.7140372Z * checking package directory ... OK 2021-05-19T20:47:35.7141749Z * checking for future file timestamps ... OK 2021-05-19T20:47:35.7143156Z * checking ‘build’ directory ... OK 2021-05-19T20:47:35.8958487Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:47:35.8960417Z * checking top-level files ... OK 2021-05-19T20:47:35.8961522Z * checking for left-over files ... OK 2021-05-19T20:47:36.0787381Z * checking index information ... OK 2021-05-19T20:47:36.2601957Z * checking package subdirectories ... OK 2021-05-19T20:47:36.3110745Z * checking R files for non-ASCII characters ... OK 2021-05-19T20:47:36.3668330Z * checking R files for syntax errors ... OK 2021-05-19T20:47:37.7812661Z * checking whether the package can be loaded ... OK 2021-05-19T20:47:39.0490198Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-19T20:47:40.3115516Z * checking whether the package can be unloaded cleanly ... OK 2021-05-19T20:47:41.6222651Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-19T20:47:43.0349198Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-19T20:47:44.4821420Z * checking loading without being on the library search path ... OK 2021-05-19T20:47:45.7786932Z * checking dependencies in R code ... OK 2021-05-19T20:47:47.7977927Z * checking S3 generic/method consistency ... OK 2021-05-19T20:47:49.0956882Z * checking replacement functions ... OK 2021-05-19T20:47:50.4093238Z * checking foreign function calls ... OK 2021-05-19T20:47:57.5901324Z * checking R code for possible problems ... OK 2021-05-19T20:47:57.7941285Z * checking Rd files ... OK 2021-05-19T20:47:57.8470351Z * checking Rd metadata ... OK 2021-05-19T20:47:57.9171083Z * checking Rd line widths ... OK 2021-05-19T20:47:58.0410892Z * checking Rd cross-references ... OK 2021-05-19T20:47:59.3741561Z * checking for missing documentation entries ... OK 2021-05-19T20:48:03.3454992Z * checking for code/documentation mismatches ... OK 2021-05-19T20:48:05.5109874Z * checking Rd \usage sections ... OK 2021-05-19T20:48:05.5890233Z * checking Rd contents ... OK 2021-05-19T20:48:05.6741069Z * checking for unstated dependencies in examples ... OK 2021-05-19T20:48:05.6780841Z * checking installed files from ‘inst/doc’ ... OK 2021-05-19T20:48:05.6813480Z * checking files in ‘vignettes’ ... OK 2021-05-19T20:48:07.5257429Z * checking examples ... OK 2021-05-19T20:48:07.5930136Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-19T20:48:07.7624300Z * checking tests ... 2021-05-19T20:48:09.4557109Z Running ‘testthat.R’ 2021-05-19T20:48:09.4606537Z OK 2021-05-19T20:48:09.6418781Z * checking for unstated dependencies in vignettes ... OK 2021-05-19T20:48:09.6471372Z * checking package vignettes in ‘inst/doc’ ... NOTE 2021-05-19T20:48:09.6472897Z Package vignette with placeholder title ‘Vignette Title’: 2021-05-19T20:48:09.6474062Z ‘bad-vignette.Rmd’ 2021-05-19T20:48:10.3743094Z * checking re-building of vignette outputs ... OK 2021-05-19T20:48:12.2501562Z * checking PDF version of manual ... OK 2021-05-19T20:48:12.2503496Z * checking for non-standard things in the check directory ... OK 2021-05-19T20:48:12.2504604Z * checking for detritus in the temp directory ... OK 2021-05-19T20:48:12.2505316Z * DONE 2021-05-19T20:48:12.2505720Z 2021-05-19T20:48:12.2506287Z Status: 1 NOTE 2021-05-19T20:48:12.2506883Z See 2021-05-19T20:48:12.2508038Z ‘/home/runner/work/dcmsort/dcmsort/check/dcmsort.Rcheck/00check.log’ 2021-05-19T20:48:12.2508894Z for details. 2021-05-19T20:48:12.2509337Z 2021-05-19T20:48:12.2509730Z 2021-05-19T20:48:12.3477752Z ── R CMD check results ────────────────────────────────────── dcmsort 0.3.0 ──── 2021-05-19T20:48:12.3496567Z Duration: 58.6s 2021-05-19T20:48:12.3497301Z 2021-05-19T20:48:12.3522216Z ❯ checking package vignettes in ‘inst/doc’ ... NOTE 2021-05-19T20:48:12.3523508Z Package vignette with placeholder title ‘Vignette Title’: 2021-05-19T20:48:12.3524569Z ‘bad-vignette.Rmd’ 2021-05-19T20:48:12.3525102Z 2021-05-19T20:48:12.3532761Z 0 errors ✔ | 0 warnings ✔ | 1 note ✖ 2021-05-19T20:48:12.3632484Z total 80 2021-05-19T20:48:12.3634330Z drwxr-xr-x 6 runner docker 4096 May 19 20:48 dcmsort.Rcheck 2021-05-19T20:48:12.3635928Z -rw-r--r-- 1 runner docker 23387 May 19 20:47 dcmsort_0.3.0.tar.gz 2021-05-19T20:48:12.3638360Z -rw-r--r-- 1 runner docker 51727 May 19 20:47 dcmsort_0.3.0_R_x86_64-pc-linux-gnu.tar.gz 2021-05-19T20:48:12.3673870Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-19T20:48:12.3674657Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-19T20:48:12.3720658Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-19T20:48:12.3721289Z env: 2021-05-19T20:48:12.3722140Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:12.3722623Z TIC_DEPLOY_KEY: 2021-05-19T20:48:12.3723469Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:12.3725237Z GITHUB_PAT: *** 2021-05-19T20:48:12.3726247Z COVERALLS_TOKEN: *** 2021-05-19T20:48:12.3726787Z continue-on-error: false 2021-05-19T20:48:12.3727333Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:12.3727859Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:12.3728361Z TZ: UTC 2021-05-19T20:48:12.3728793Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:12.3729236Z NOT_CRAN: true 2021-05-19T20:48:12.3729655Z ##[endgroup] 2021-05-19T20:48:12.3850114Z 2021-05-19T20:48:12.3851359Z R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" 2021-05-19T20:48:12.3852172Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-19T20:48:12.3853061Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-19T20:48:12.3853431Z 2021-05-19T20:48:12.3854052Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-19T20:48:12.3854907Z You are welcome to redistribute it under certain conditions. 2021-05-19T20:48:12.3855924Z Type 'license()' or 'licence()' for distribution details. 2021-05-19T20:48:12.3856360Z 2021-05-19T20:48:12.3856962Z R is a collaborative project with many contributors. 2021-05-19T20:48:12.3857885Z Type 'contributors()' for more information and 2021-05-19T20:48:12.3859014Z 'citation()' on how to cite R or R packages in publications. 2021-05-19T20:48:12.3859439Z 2021-05-19T20:48:12.3860560Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-19T20:48:12.3861497Z 'help.start()' for an HTML browser interface to help. 2021-05-19T20:48:12.3862380Z Type 'q()' to quit R. 2021-05-19T20:48:12.3862682Z 2021-05-19T20:48:12.3863127Z > library(testthat) 2021-05-19T20:48:12.3863618Z > library(dcmsort) 2021-05-19T20:48:12.3864029Z > 2021-05-19T20:48:12.3864478Z > test_check("dcmsort") 2021-05-19T20:48:12.3865035Z [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] 2021-05-19T20:48:12.3865474Z > 2021-05-19T20:48:12.3865871Z > proc.time() 2021-05-19T20:48:12.3866393Z user system elapsed 2021-05-19T20:48:12.3866885Z 1.590 0.076 1.651 2021-05-19T20:48:12.3909417Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-19T20:48:12.3910065Z Rscript -e "tic::before_deploy()" 2021-05-19T20:48:12.3952947Z shell: /usr/bin/bash -e {0} 2021-05-19T20:48:12.3953353Z env: 2021-05-19T20:48:12.3953811Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:12.3954305Z TIC_DEPLOY_KEY: 2021-05-19T20:48:12.3955135Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:12.3956509Z GITHUB_PAT: *** 2021-05-19T20:48:12.3957338Z COVERALLS_TOKEN: *** 2021-05-19T20:48:12.3957838Z continue-on-error: false 2021-05-19T20:48:12.3958335Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:12.3958825Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:12.3959290Z TZ: UTC 2021-05-19T20:48:12.3959692Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:12.3960107Z NOT_CRAN: true 2021-05-19T20:48:12.3960495Z ##[endgroup] 2021-05-19T20:48:12.6736919Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:48:12.8080622Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-19T20:48:12.8081210Z with: 2021-05-19T20:48:12.8082066Z upload_url: https://uploads.github.com/repos/neuroconductor/dcmsort/releases/43244738/assets{?name,label} 2021-05-19T20:48:12.8083323Z asset_path: check/dcmsort_0.3.0_R_x86_64-pc-linux-gnu.tar.gz 2021-05-19T20:48:12.8084084Z asset_name: dcmsort_0.3.0_R_x86_64-pc-linux-gnu_R4.0.tar.gz 2021-05-19T20:48:12.8084825Z asset_content_type: application/octet-stream 2021-05-19T20:48:12.8085382Z env: 2021-05-19T20:48:12.8085853Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:12.8086374Z TIC_DEPLOY_KEY: 2021-05-19T20:48:12.8087252Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:12.8088920Z GITHUB_PAT: *** 2021-05-19T20:48:12.8090079Z COVERALLS_TOKEN: *** 2021-05-19T20:48:12.8090634Z continue-on-error: false 2021-05-19T20:48:12.8091150Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:12.8091719Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:12.8092224Z TZ: UTC 2021-05-19T20:48:12.8092645Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:12.8093109Z NOT_CRAN: true 2021-05-19T20:48:12.8094061Z GITHUB_TOKEN: *** 2021-05-19T20:48:12.8094492Z ##[endgroup] 2021-05-19T20:48:13.3218744Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-19T20:48:13.3220112Z Rscript -e "tic::deploy()" 2021-05-19T20:48:13.3280694Z shell: /usr/bin/bash -e {0} 2021-05-19T20:48:13.3281108Z env: 2021-05-19T20:48:13.3281552Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:13.3282224Z TIC_DEPLOY_KEY: 2021-05-19T20:48:13.3283116Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:13.3285006Z GITHUB_PAT: *** 2021-05-19T20:48:13.3285919Z COVERALLS_TOKEN: *** 2021-05-19T20:48:13.3286455Z continue-on-error: false 2021-05-19T20:48:13.3286988Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:13.3287524Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:13.3288008Z TZ: UTC 2021-05-19T20:48:13.3288439Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:13.3288885Z NOT_CRAN: true 2021-05-19T20:48:13.3289298Z ##[endgroup] 2021-05-19T20:48:13.6170783Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:48:13.7519408Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-19T20:48:13.7520049Z Rscript -e "tic::after_deploy()" 2021-05-19T20:48:13.7566559Z shell: /usr/bin/bash -e {0} 2021-05-19T20:48:13.7566993Z env: 2021-05-19T20:48:13.7567485Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:13.7568106Z TIC_DEPLOY_KEY: 2021-05-19T20:48:13.7568943Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:13.7570385Z GITHUB_PAT: *** 2021-05-19T20:48:13.7571211Z COVERALLS_TOKEN: *** 2021-05-19T20:48:13.7571726Z continue-on-error: false 2021-05-19T20:48:13.7572222Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:13.7572708Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:13.7573171Z TZ: UTC 2021-05-19T20:48:13.7573555Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:13.7573986Z NOT_CRAN: true 2021-05-19T20:48:13.7574372Z ##[endgroup] 2021-05-19T20:48:14.0533280Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:48:14.1864203Z ##[group]Run curl -s -H "Accept: application/json" \ 2021-05-19T20:48:14.1864961Z curl -s -H "Accept: application/json" \ 2021-05-19T20:48:14.1865621Z  -H "Content-Type: application/json" \ 2021-05-19T20:48:14.1866333Z  -H "Authorization: token $COVERALLS_TOKEN" \ 2021-05-19T20:48:14.1867084Z  -d '{"repo": {"service": "github","name": "'$GITHUB_REPOSITORY'"}}' \ 2021-05-19T20:48:14.1867971Z  -X POST https://coveralls.io/api/repos 2021-05-19T20:48:14.1915029Z shell: /usr/bin/bash -e {0} 2021-05-19T20:48:14.1915610Z env: 2021-05-19T20:48:14.1916091Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:14.1916623Z TIC_DEPLOY_KEY: 2021-05-19T20:48:14.1917530Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:14.1919021Z GITHUB_PAT: *** 2021-05-19T20:48:14.1919920Z COVERALLS_TOKEN: *** 2021-05-19T20:48:14.1920472Z continue-on-error: false 2021-05-19T20:48:14.1921033Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:14.1921569Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:14.1922064Z TZ: UTC 2021-05-19T20:48:14.1922492Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:14.1922937Z NOT_CRAN: true 2021-05-19T20:48:14.1923358Z ##[endgroup] 2021-05-19T20:48:14.5386053Z {"errors":{"name":"has already been taken"}} 2021-05-19T20:48:14.5443076Z ##[group]Run echo "COVERALLS_REPO_TOKEN=$(\ 2021-05-19T20:48:14.5444238Z echo "COVERALLS_REPO_TOKEN=$(\ 2021-05-19T20:48:14.5445135Z  curl -s -H "Accept: application/json" \ 2021-05-19T20:48:14.5445768Z  -H "Content-Type: application/json" \ 2021-05-19T20:48:14.5446416Z  -H "Authorization: token $COVERALLS_TOKEN" \ 2021-05-19T20:48:14.5447218Z  https://coveralls.io/api/repos/github/$GITHUB_REPOSITORY \ 2021-05-19T20:48:14.5447904Z  | jq '.token')" >> $GITHUB_ENV 2021-05-19T20:48:14.5493103Z shell: /usr/bin/bash -e {0} 2021-05-19T20:48:14.5493520Z env: 2021-05-19T20:48:14.5493962Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:14.5494468Z TIC_DEPLOY_KEY: 2021-05-19T20:48:14.5495299Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:14.5496781Z GITHUB_PAT: *** 2021-05-19T20:48:14.5497619Z COVERALLS_TOKEN: *** 2021-05-19T20:48:14.5498166Z continue-on-error: false 2021-05-19T20:48:14.5498667Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:14.5499154Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:14.5500094Z TZ: UTC 2021-05-19T20:48:14.5500488Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:14.5500916Z NOT_CRAN: true 2021-05-19T20:48:14.5501500Z ##[endgroup] 2021-05-19T20:48:14.8018078Z ##[group]Run covr::coveralls(service_name='drone', repo_token=null) 2021-05-19T20:48:14.8018923Z covr::coveralls(service_name='drone', repo_token=null) 2021-05-19T20:48:14.8026240Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:48:14.8026710Z env: 2021-05-19T20:48:14.8027191Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:48:14.8027952Z TIC_DEPLOY_KEY: 2021-05-19T20:48:14.8028793Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:48:14.8030109Z GITHUB_PAT: *** 2021-05-19T20:48:14.8030940Z COVERALLS_TOKEN: *** 2021-05-19T20:48:14.8031457Z continue-on-error: false 2021-05-19T20:48:14.8031938Z VDIFFR_RUN_TESTS: 2021-05-19T20:48:14.8032441Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:48:14.8032906Z TZ: UTC 2021-05-19T20:48:14.8033297Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:48:14.8033729Z NOT_CRAN: true 2021-05-19T20:48:14.8034151Z COVERALLS_REPO_TOKEN: null 2021-05-19T20:48:14.8034630Z ##[endgroup] 2021-05-19T20:48:22.5408846Z Error in to_coveralls(coverage, repo_token = repo_token, service_name = service) : 2021-05-19T20:48:22.5410547Z object 'null' not found 2021-05-19T20:48:22.5411527Z Calls: -> to_coveralls 2021-05-19T20:48:22.5412325Z Execution halted 2021-05-19T20:48:22.5476106Z ##[error]Process completed with exit code 1. 2021-05-19T20:48:22.7227447Z Post job cleanup. 2021-05-19T20:48:22.7698494Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-19T20:48:22.7790016Z Post job cleanup. 2021-05-19T20:48:22.8877839Z [command]/usr/bin/git version 2021-05-19T20:48:22.8946404Z git version 2.31.1 2021-05-19T20:48:22.8983274Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-19T20:48:22.9041851Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-19T20:48:22.9297076Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-19T20:48:22.9343806Z http.https://github.com/.extraheader 2021-05-19T20:48:22.9354865Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-19T20:48:22.9409005Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-19T20:48:22.9705833Z Cleaning up orphan processes