2021-05-19T20:31:29.2950710Z ##[section]Starting: Request a runner to run this job 2021-05-19T20:31:29.9658872Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:30.0924749Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:30.2085857Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-19T20:31:30.3326771Z ##[section]Finishing: Request a runner to run this job 2021-05-19T20:31:36.4521849Z Current runner version: '2.278.0' 2021-05-19T20:31:36.4545899Z ##[group]Operating System 2021-05-19T20:31:36.4546669Z Ubuntu 2021-05-19T20:31:36.4547070Z 20.04.2 2021-05-19T20:31:36.4547457Z LTS 2021-05-19T20:31:36.4547834Z ##[endgroup] 2021-05-19T20:31:36.4548367Z ##[group]Virtual Environment 2021-05-19T20:31:36.4548890Z Environment: ubuntu-20.04 2021-05-19T20:31:36.4549386Z Version: 20210517.1 2021-05-19T20:31:36.4550277Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210517.1/images/linux/Ubuntu2004-README.md 2021-05-19T20:31:36.4551424Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210517.1 2021-05-19T20:31:36.4552196Z ##[endgroup] 2021-05-19T20:31:36.4553776Z ##[group]GITHUB_TOKEN Permissions 2021-05-19T20:31:36.4554840Z Actions: write 2021-05-19T20:31:36.4555272Z Checks: write 2021-05-19T20:31:36.4555743Z Contents: write 2021-05-19T20:31:36.4556187Z Deployments: write 2021-05-19T20:31:36.4556731Z Issues: write 2021-05-19T20:31:36.4557239Z Metadata: read 2021-05-19T20:31:36.4557697Z Packages: write 2021-05-19T20:31:36.4558201Z PullRequests: write 2021-05-19T20:31:36.4558714Z RepositoryProjects: write 2021-05-19T20:31:36.4559279Z SecurityEvents: write 2021-05-19T20:31:36.4559743Z Statuses: write 2021-05-19T20:31:36.4560297Z ##[endgroup] 2021-05-19T20:31:36.4562941Z Prepare workflow directory 2021-05-19T20:31:36.5484312Z Prepare all required actions 2021-05-19T20:31:36.5494680Z Getting action download info 2021-05-19T20:31:36.9065793Z Download action repository 'actions/checkout@v2' 2021-05-19T20:31:38.7064952Z Download action repository 'r-lib/actions@master' 2021-05-19T20:31:39.1838494Z Download action repository 'adigherman/actions@master' 2021-05-19T20:31:41.6234263Z Download action repository 'msys2/setup-msys2@v2' 2021-05-19T20:31:41.9025621Z Download action repository 'actions/cache@v1' 2021-05-19T20:31:42.1055826Z Download action repository 'actions/upload-artifact@master' 2021-05-19T20:31:42.2633847Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-19T20:31:42.6486174Z ##[group]Run actions/checkout@v2 2021-05-19T20:31:42.6486700Z with: 2021-05-19T20:31:42.6487095Z repository: neuroconductor/dcmsort 2021-05-19T20:31:42.6487915Z token: *** 2021-05-19T20:31:42.6488230Z ssh-strict: true 2021-05-19T20:31:42.6488648Z persist-credentials: true 2021-05-19T20:31:42.6489033Z clean: true 2021-05-19T20:31:42.6489350Z fetch-depth: 1 2021-05-19T20:31:42.6489668Z lfs: false 2021-05-19T20:31:42.6489975Z submodules: false 2021-05-19T20:31:42.6490288Z env: 2021-05-19T20:31:42.6490641Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:31:42.6491032Z TIC_DEPLOY_KEY: 2021-05-19T20:31:42.6491689Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:31:42.6492642Z GITHUB_PAT: *** 2021-05-19T20:31:42.6493301Z COVERALLS_TOKEN: *** 2021-05-19T20:31:42.6493707Z continue-on-error: true 2021-05-19T20:31:42.6494087Z VDIFFR_RUN_TESTS: 2021-05-19T20:31:42.6494416Z ##[endgroup] 2021-05-19T20:31:42.8667889Z Syncing repository: neuroconductor/dcmsort 2021-05-19T20:31:42.8668698Z ##[group]Getting Git version info 2021-05-19T20:31:42.8669809Z Working directory is '/home/runner/work/dcmsort/dcmsort' 2021-05-19T20:31:42.8708766Z [command]/usr/bin/git version 2021-05-19T20:31:42.8844110Z git version 2.31.1 2021-05-19T20:31:42.8862008Z ##[endgroup] 2021-05-19T20:31:42.8867841Z Deleting the contents of '/home/runner/work/dcmsort/dcmsort' 2021-05-19T20:31:42.8871885Z ##[group]Initializing the repository 2021-05-19T20:31:42.8875785Z [command]/usr/bin/git init /home/runner/work/dcmsort/dcmsort 2021-05-19T20:31:42.8951706Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-19T20:31:42.8952579Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-19T20:31:42.8953366Z hint: of your new repositories, which will suppress this warning, call: 2021-05-19T20:31:42.8953890Z hint: 2021-05-19T20:31:42.8954542Z hint: git config --global init.defaultBranch 2021-05-19T20:31:42.8955227Z hint: 2021-05-19T20:31:42.8955892Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-19T20:31:42.8956794Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-19T20:31:42.8957330Z hint: 2021-05-19T20:31:42.8957805Z hint: git branch -m 2021-05-19T20:31:42.8963331Z Initialized empty Git repository in /home/runner/work/dcmsort/dcmsort/.git/ 2021-05-19T20:31:42.8973332Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/dcmsort 2021-05-19T20:31:42.9026831Z ##[endgroup] 2021-05-19T20:31:42.9027753Z ##[group]Disabling automatic garbage collection 2021-05-19T20:31:42.9031213Z [command]/usr/bin/git config --local gc.auto 0 2021-05-19T20:31:42.9078008Z ##[endgroup] 2021-05-19T20:31:42.9082237Z ##[group]Setting up auth 2021-05-19T20:31:42.9088024Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-19T20:31:42.9138903Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-19T20:31:42.9480039Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-19T20:31:42.9527278Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-19T20:31:42.9732336Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-19T20:31:42.9789484Z ##[endgroup] 2021-05-19T20:31:42.9790423Z ##[group]Fetching the repository 2021-05-19T20:31:42.9797237Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a:refs/tags/0.3.0.s 2021-05-19T20:31:43.1895812Z remote: Enumerating objects: 39, done. 2021-05-19T20:31:43.1896851Z remote: Counting objects: 2% (1/39) 2021-05-19T20:31:43.1897702Z remote: Counting objects: 5% (2/39) 2021-05-19T20:31:43.1898509Z remote: Counting objects: 7% (3/39) 2021-05-19T20:31:43.1899257Z remote: Counting objects: 10% (4/39) 2021-05-19T20:31:43.1900052Z remote: Counting objects: 12% (5/39) 2021-05-19T20:31:43.1902399Z remote: Counting objects: 15% (6/39) 2021-05-19T20:31:43.1903182Z remote: Counting objects: 17% (7/39) 2021-05-19T20:31:43.1903882Z remote: Counting objects: 20% (8/39) 2021-05-19T20:31:43.1904616Z remote: Counting objects: 23% (9/39) 2021-05-19T20:31:43.1905312Z remote: Counting objects: 25% (10/39) 2021-05-19T20:31:43.1905937Z remote: Counting objects: 28% (11/39) 2021-05-19T20:31:43.1906572Z remote: Counting objects: 30% (12/39) 2021-05-19T20:31:43.1907219Z remote: Counting objects: 33% (13/39) 2021-05-19T20:31:43.1907870Z remote: Counting objects: 35% (14/39) 2021-05-19T20:31:43.1908485Z remote: Counting objects: 38% (15/39) 2021-05-19T20:31:43.1909100Z remote: Counting objects: 41% (16/39) 2021-05-19T20:31:43.1909700Z remote: Counting objects: 43% (17/39) 2021-05-19T20:31:43.1910316Z remote: Counting objects: 46% (18/39) 2021-05-19T20:31:43.1910925Z remote: Counting objects: 48% (19/39) 2021-05-19T20:31:43.1911532Z remote: Counting objects: 51% (20/39) 2021-05-19T20:31:43.1912174Z remote: Counting objects: 53% (21/39) 2021-05-19T20:31:43.1912800Z remote: Counting objects: 56% (22/39) 2021-05-19T20:31:43.1913368Z remote: Counting objects: 58% (23/39) 2021-05-19T20:31:43.1913929Z remote: Counting objects: 61% (24/39) 2021-05-19T20:31:43.1914500Z remote: Counting objects: 64% (25/39) 2021-05-19T20:31:43.1915086Z remote: Counting objects: 66% (26/39) 2021-05-19T20:31:43.1915661Z remote: Counting objects: 69% (27/39) 2021-05-19T20:31:43.1916475Z remote: Counting objects: 71% (28/39) 2021-05-19T20:31:43.1917024Z remote: Counting objects: 74% (29/39) 2021-05-19T20:31:43.1917566Z remote: Counting objects: 76% (30/39) 2021-05-19T20:31:43.1918107Z remote: Counting objects: 79% (31/39) 2021-05-19T20:31:43.1918642Z remote: Counting objects: 82% (32/39) 2021-05-19T20:31:43.1919188Z remote: Counting objects: 84% (33/39) 2021-05-19T20:31:43.1919734Z remote: Counting objects: 87% (34/39) 2021-05-19T20:31:43.1920265Z remote: Counting objects: 89% (35/39) 2021-05-19T20:31:43.1920809Z remote: Counting objects: 92% (36/39) 2021-05-19T20:31:43.1921337Z remote: Counting objects: 94% (37/39) 2021-05-19T20:31:43.1921880Z remote: Counting objects: 97% (38/39) 2021-05-19T20:31:43.1922421Z remote: Counting objects: 100% (39/39) 2021-05-19T20:31:43.1922984Z remote: Counting objects: 100% (39/39), done. 2021-05-19T20:31:43.1923590Z remote: Compressing objects: 2% (1/34) 2021-05-19T20:31:43.1924186Z remote: Compressing objects: 5% (2/34) 2021-05-19T20:31:43.1924765Z remote: Compressing objects: 8% (3/34) 2021-05-19T20:31:43.1925352Z remote: Compressing objects: 11% (4/34) 2021-05-19T20:31:43.1925937Z remote: Compressing objects: 14% (5/34) 2021-05-19T20:31:43.1926532Z remote: Compressing objects: 17% (6/34) 2021-05-19T20:31:43.1927127Z remote: Compressing objects: 20% (7/34) 2021-05-19T20:31:43.1927710Z remote: Compressing objects: 23% (8/34) 2021-05-19T20:31:43.1928299Z remote: Compressing objects: 26% (9/34) 2021-05-19T20:31:43.1928880Z remote: Compressing objects: 29% (10/34) 2021-05-19T20:31:43.1929482Z remote: Compressing objects: 32% (11/34) 2021-05-19T20:31:43.1935838Z remote: Compressing objects: 35% (12/34) 2021-05-19T20:31:43.1936447Z remote: Compressing objects: 38% (13/34) 2021-05-19T20:31:43.1937226Z remote: Compressing objects: 41% (14/34) 2021-05-19T20:31:43.1937832Z remote: Compressing objects: 44% (15/34) 2021-05-19T20:31:43.1938422Z remote: Compressing objects: 47% (16/34) 2021-05-19T20:31:43.1939022Z remote: Compressing objects: 50% (17/34) 2021-05-19T20:31:43.1939599Z remote: Compressing objects: 52% (18/34) 2021-05-19T20:31:43.1940196Z remote: Compressing objects: 55% (19/34) 2021-05-19T20:31:43.1940790Z remote: Compressing objects: 58% (20/34) 2021-05-19T20:31:43.1941369Z remote: Compressing objects: 61% (21/34) 2021-05-19T20:31:43.1942584Z remote: Compressing objects: 64% (22/34) 2021-05-19T20:31:43.1943184Z remote: Compressing objects: 67% (23/34) 2021-05-19T20:31:43.1943763Z remote: Compressing objects: 70% (24/34) 2021-05-19T20:31:43.1944682Z remote: Compressing objects: 73% (25/34) 2021-05-19T20:31:43.1945282Z remote: Compressing objects: 76% (26/34) 2021-05-19T20:31:43.1945874Z remote: Compressing objects: 79% (27/34) 2021-05-19T20:31:43.1948702Z remote: Compressing objects: 82% (28/34) 2021-05-19T20:31:43.1949295Z remote: Compressing objects: 85% (29/34) 2021-05-19T20:31:43.1949893Z remote: Compressing objects: 88% (30/34) 2021-05-19T20:31:43.1950487Z remote: Compressing objects: 91% (31/34) 2021-05-19T20:31:43.1951066Z remote: Compressing objects: 94% (32/34) 2021-05-19T20:31:43.1951661Z remote: Compressing objects: 97% (33/34) 2021-05-19T20:31:43.1957668Z remote: Compressing objects: 100% (34/34) 2021-05-19T20:31:43.1958316Z remote: Compressing objects: 100% (34/34), done. 2021-05-19T20:31:43.1959610Z remote: Total 39 (delta 1), reused 26 (delta 1), pack-reused 0 2021-05-19T20:31:43.2107570Z From https://github.com/neuroconductor/dcmsort 2021-05-19T20:31:43.2108952Z * [new ref] f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a -> 0.3.0.s 2021-05-19T20:31:43.2128810Z ##[endgroup] 2021-05-19T20:31:43.2129416Z ##[group]Determining the checkout info 2021-05-19T20:31:43.2133087Z ##[endgroup] 2021-05-19T20:31:43.2133588Z ##[group]Checking out the ref 2021-05-19T20:31:43.2137734Z [command]/usr/bin/git checkout --progress --force refs/tags/0.3.0.s 2021-05-19T20:31:43.2213154Z Note: switching to 'refs/tags/0.3.0.s'. 2021-05-19T20:31:43.2213505Z 2021-05-19T20:31:43.2214210Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-19T20:31:43.2214929Z changes and commit them, and you can discard any commits you make in this 2021-05-19T20:31:43.2215754Z state without impacting any branches by switching back to a branch. 2021-05-19T20:31:43.2216168Z 2021-05-19T20:31:43.2216682Z If you want to create a new branch to retain commits you create, you may 2021-05-19T20:31:43.2217413Z do so (now or later) by using -c with the switch command. Example: 2021-05-19T20:31:43.2217752Z 2021-05-19T20:31:43.2218198Z git switch -c 2021-05-19T20:31:43.2218497Z 2021-05-19T20:31:43.2218820Z Or undo this operation with: 2021-05-19T20:31:43.2219074Z 2021-05-19T20:31:43.2219426Z git switch - 2021-05-19T20:31:43.2219635Z 2021-05-19T20:31:43.2220134Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-19T20:31:43.2220557Z 2021-05-19T20:31:43.2220888Z HEAD is now at f0a56ec Version id 86 stable 2021-05-19T20:31:43.2227677Z ##[endgroup] 2021-05-19T20:31:43.2281857Z [command]/usr/bin/git log -1 --format='%H' 2021-05-19T20:31:43.2339810Z 'f0a56ec83e3ccd3085c360600c4f95f8fd3f4e5a' 2021-05-19T20:31:43.2446186Z ##[group]Run r-lib/actions/setup-r@master 2021-05-19T20:31:43.2446581Z with: 2021-05-19T20:31:43.2446877Z r-version: devel 2021-05-19T20:31:43.2447197Z Ncpus: 1 2021-05-19T20:31:43.2447524Z crayon.enabled: NULL 2021-05-19T20:31:43.2447965Z remove-openmp-macos: true 2021-05-19T20:31:43.2448425Z http-user-agent: default 2021-05-19T20:31:43.2448794Z install-r: true 2021-05-19T20:31:43.2449263Z windows-path-include-mingw: true 2021-05-19T20:31:43.2449697Z env: 2021-05-19T20:31:43.2450055Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:31:43.2450436Z TIC_DEPLOY_KEY: 2021-05-19T20:31:43.2451084Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:31:43.2452527Z GITHUB_PAT: *** 2021-05-19T20:31:43.2453200Z COVERALLS_TOKEN: *** 2021-05-19T20:31:43.2453593Z continue-on-error: true 2021-05-19T20:31:43.2453991Z VDIFFR_RUN_TESTS: 2021-05-19T20:31:43.2454307Z ##[endgroup] 2021-05-19T20:31:44.3133984Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-19T20:31:46.7060598Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-19T20:31:46.7097922Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-19T20:31:46.7099568Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-19T20:31:46.7101087Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-19T20:31:46.7102343Z Get:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-19T20:31:46.7103455Z Get:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-19T20:31:46.7104795Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [988 kB] 2021-05-19T20:31:46.7106222Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [224 kB] 2021-05-19T20:31:46.7107786Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.4 kB] 2021-05-19T20:31:46.7109292Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-19T20:31:46.7110739Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 c-n-f Metadata [436 B] 2021-05-19T20:31:46.7112225Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [777 kB] 2021-05-19T20:31:46.7113654Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-19T20:31:46.7115363Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-19T20:31:46.7116804Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [21.7 kB] 2021-05-19T20:31:46.7118279Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse Translation-en [5564 B] 2021-05-19T20:31:46.7120570Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 c-n-f Metadata [604 B] 2021-05-19T20:31:46.7121684Z Get:18 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] 2021-05-19T20:31:46.7122694Z Hit:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-19T20:31:46.7385717Z Get:20 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.3 kB] 2021-05-19T20:31:46.9154723Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [664 kB] 2021-05-19T20:31:46.9811550Z Get:22 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [134 kB] 2021-05-19T20:31:46.9830328Z Get:23 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7668 B] 2021-05-19T20:31:46.9831918Z Get:24 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [207 kB] 2021-05-19T20:31:46.9866081Z Get:25 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [30.7 kB] 2021-05-19T20:31:46.9871125Z Get:26 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 c-n-f Metadata [440 B] 2021-05-19T20:31:46.9872574Z Get:27 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [578 kB] 2021-05-19T20:31:46.9995595Z Get:28 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [90.1 kB] 2021-05-19T20:31:47.0007298Z Get:29 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.3 kB] 2021-05-19T20:31:47.0020450Z Get:30 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [19.9 kB] 2021-05-19T20:31:47.0021941Z Get:31 http://security.ubuntu.com/ubuntu focal-security/multiverse Translation-en [4316 B] 2021-05-19T20:31:47.0023296Z Get:32 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 c-n-f Metadata [528 B] 2021-05-19T20:31:51.0897646Z Fetched 4619 kB in 1s (4630 kB/s) 2021-05-19T20:31:51.8066019Z Reading package lists... 2021-05-19T20:31:51.8301834Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-19T20:31:53.4238073Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-19T20:31:53.4802090Z Reading package lists... 2021-05-19T20:31:53.6370852Z Building dependency tree... 2021-05-19T20:31:53.6382903Z Reading state information... 2021-05-19T20:31:53.7744581Z The following additional packages will be installed: 2021-05-19T20:31:53.7746345Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-19T20:31:53.7747758Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-19T20:31:53.7750106Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-19T20:31:53.7751799Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-19T20:31:53.7753384Z libconst-fast-perl libcontextual-return-perl libcpanel-json-xs-perl 2021-05-19T20:31:53.7755693Z libcroco3 libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-19T20:31:53.7757304Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-19T20:31:53.7758881Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-19T20:31:53.7760377Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-19T20:31:53.7761700Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-19T20:31:53.7763129Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-19T20:31:53.7764736Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-19T20:31:53.7766504Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-19T20:31:53.7768630Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-19T20:31:53.7770117Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-19T20:31:53.7771389Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-19T20:31:53.7772837Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-19T20:31:53.7774409Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-19T20:31:53.7776096Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-19T20:31:53.7777355Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-19T20:31:53.7778611Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-19T20:31:53.7780024Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-19T20:31:53.7781537Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-19T20:31:53.7782928Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-19T20:31:53.7784273Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-19T20:31:53.7785690Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-19T20:31:53.7787177Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-19T20:31:53.7788786Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-19T20:31:53.7790255Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-19T20:31:53.7791680Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-19T20:31:53.7793219Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-19T20:31:53.7796331Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-19T20:31:53.7797574Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-19T20:31:53.7798760Z libtype-tiny-perl libtype-tiny-xs-perl libunicode-utf8-perl 2021-05-19T20:31:53.7799961Z libvariable-magic-perl libwant-perl libxml-writer-perl libyaml-libyaml-perl 2021-05-19T20:31:53.7801152Z licensecheck lintian patchutils python3-gpg python3-magic python3-unidiff 2021-05-19T20:31:53.7801947Z python3-xdg t1utils wdiff 2021-05-19T20:31:53.7802373Z Suggested packages: 2021-05-19T20:31:53.7803107Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-19T20:31:53.7804145Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-19T20:31:53.7805238Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-19T20:31:53.7806370Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-19T20:31:53.7807464Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-19T20:31:53.7808493Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-19T20:31:53.7809544Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-19T20:31:53.7810721Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-19T20:31:53.7812093Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-19T20:31:53.7813278Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-19T20:31:53.8442754Z The following NEW packages will be installed: 2021-05-19T20:31:53.8446495Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-19T20:31:53.8447846Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-19T20:31:53.8450714Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-19T20:31:53.8452537Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-19T20:31:53.8455180Z libclone-perl libconst-fast-perl libcontextual-return-perl 2021-05-19T20:31:53.8456945Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-19T20:31:53.8459641Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-19T20:31:53.8461277Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-19T20:31:53.8463919Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-19T20:31:53.8474223Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-19T20:31:53.8478501Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-19T20:31:53.8481959Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-19T20:31:53.8483323Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-19T20:31:53.8484654Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-19T20:31:53.8488036Z libipc-run-perl libjson-maybexs-perl liblinux-epoll-perl 2021-05-19T20:31:53.8489217Z liblist-compare-perl liblist-moreutils-perl liblist-someutils-perl 2021-05-19T20:31:53.8492484Z liblist-someutils-xs-perl liblog-any-adapter-screen-perl liblog-any-perl 2021-05-19T20:31:53.8493869Z libmodule-implementation-perl libmodule-runtime-perl libmoo-perl 2021-05-19T20:31:53.8497608Z libmoox-aliases-perl libmoox-struct-perl libnamespace-clean-perl 2021-05-19T20:31:53.8498868Z libnet-dns-perl libnet-dns-sec-perl libnet-domain-tld-perl libnet-ip-perl 2021-05-19T20:31:53.8500092Z libnet-libidn-perl libnumber-compare-perl libnumber-range-perl 2021-05-19T20:31:53.8501456Z libobject-id-perl libpackage-stash-perl libpackage-stash-xs-perl 2021-05-19T20:31:53.8502742Z libparams-classify-perl libparams-util-perl libparams-validate-perl 2021-05-19T20:31:53.8505371Z libpath-iterator-rule-perl libpath-tiny-perl libperl4-corelibs-perl 2021-05-19T20:31:53.8526426Z libperlio-gzip-perl libpod-constants-perl libqpdf26 libre-engine-re2-perl 2021-05-19T20:31:53.8527590Z libreadonly-perl libref-util-perl libref-util-xs-perl 2021-05-19T20:31:53.8528798Z libregexp-pattern-license-perl libregexp-pattern-perl librole-tiny-perl 2021-05-19T20:31:53.8530125Z libsereal-decoder-perl libsereal-encoder-perl libsereal-perl 2021-05-19T20:31:53.8531276Z libsort-key-perl libsort-versions-perl libstrictures-perl 2021-05-19T20:31:53.8533044Z libstring-copyright-perl libstring-escape-perl libstring-shellquote-perl 2021-05-19T20:31:53.8534533Z libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl 2021-05-19T20:31:53.8536432Z libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl 2021-05-19T20:31:53.8537669Z libterm-readkey-perl libtest-fatal-perl libtest-refcount-perl 2021-05-19T20:31:53.8538830Z libtext-glob-perl libtext-levenshtein-perl libtype-tiny-perl 2021-05-19T20:31:53.8540012Z libtype-tiny-xs-perl libunicode-utf8-perl libvariable-magic-perl 2021-05-19T20:31:53.8541223Z libwant-perl libxml-writer-perl libyaml-libyaml-perl licensecheck lintian 2021-05-19T20:31:53.8542330Z patchutils python3-gpg python3-magic python3-unidiff python3-xdg qpdf 2021-05-19T20:31:53.8542930Z t1utils wdiff 2021-05-19T20:31:53.8743352Z 0 upgraded, 126 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:31:53.8743889Z Need to get 8451 kB of archives. 2021-05-19T20:31:53.8744431Z After this operation, 31.7 MB of additional disk space will be used. 2021-05-19T20:31:53.8745732Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-19T20:31:53.8768968Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-19T20:31:53.8776155Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-19T20:31:53.8787070Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-19T20:31:53.8804706Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-19T20:31:53.8830114Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-19T20:31:53.8840964Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-19T20:31:53.8848275Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-19T20:31:53.8862165Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-19T20:31:53.8869668Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-19T20:31:53.8877487Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-19T20:31:53.8885477Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-19T20:31:53.8891392Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-19T20:31:53.8900536Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-19T20:31:53.8911784Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-19T20:31:53.8920543Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-19T20:31:53.8935265Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-19T20:31:53.8958966Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-19T20:31:53.8972370Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-19T20:31:53.9196257Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-19T20:31:53.9209561Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-19T20:31:53.9251250Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-19T20:31:53.9262326Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-19T20:31:53.9289151Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-19T20:31:53.9312339Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-19T20:31:53.9571699Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-19T20:31:53.9577441Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-19T20:31:53.9584692Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-19T20:31:53.9593130Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-19T20:31:53.9597990Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-19T20:31:53.9605524Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-19T20:31:53.9617745Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-19T20:31:53.9625289Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-19T20:31:53.9634049Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-19T20:31:53.9641328Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-19T20:31:54.1351849Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-19T20:31:54.1361414Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-19T20:31:54.1367870Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-19T20:31:54.1374816Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-19T20:31:54.1382015Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-19T20:31:54.1388995Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-19T20:31:54.1399185Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-19T20:31:54.1408077Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-19T20:31:54.1420652Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-19T20:31:54.1434821Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-19T20:31:54.1490099Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-19T20:31:54.1493543Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-19T20:31:54.1503170Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-19T20:31:54.1509039Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-19T20:31:54.1522154Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-19T20:31:54.1602711Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-19T20:31:54.1616502Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-19T20:31:54.1628878Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-19T20:31:54.1638383Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-19T20:31:54.1643484Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-19T20:31:54.1649901Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-19T20:31:54.1655160Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-19T20:31:54.1679823Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-19T20:31:54.1681450Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-19T20:31:54.1760234Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-19T20:31:54.1784139Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-19T20:31:54.1798604Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-19T20:31:54.1811135Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-19T20:31:54.1819393Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-19T20:31:54.1830065Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-19T20:31:54.1836243Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-19T20:31:54.1860666Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-19T20:31:54.1886878Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-19T20:31:54.1898055Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-19T20:31:54.1909788Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-19T20:31:54.1920448Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-19T20:31:54.1930625Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-19T20:31:54.1939658Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-19T20:31:54.1954139Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-19T20:31:54.2042521Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-19T20:31:54.2072882Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-19T20:31:54.2081828Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-19T20:31:54.2089515Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-19T20:31:54.2163000Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-19T20:31:54.2172685Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-19T20:31:54.2179748Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-19T20:31:54.2185981Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-19T20:31:54.2210874Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-19T20:31:54.2226721Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-19T20:31:54.2237544Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-19T20:31:54.2247913Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-19T20:31:54.2254354Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-19T20:31:54.2260866Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-19T20:31:54.2303338Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-19T20:31:54.2316985Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-19T20:31:54.2323137Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-19T20:31:54.2329683Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-19T20:31:54.2340774Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-19T20:31:54.2357315Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-19T20:31:54.2376600Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-19T20:31:54.2386247Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-19T20:31:54.2394422Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-19T20:31:54.2517972Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-19T20:31:54.2526725Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-19T20:31:54.2536842Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-19T20:31:54.2548207Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-19T20:31:54.2573804Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-19T20:31:54.2594565Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-19T20:31:54.2609649Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-19T20:31:54.2631835Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-19T20:31:54.2656828Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-19T20:31:54.2663017Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-19T20:31:54.2677282Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-19T20:31:54.2684019Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-19T20:31:54.2691258Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-19T20:31:54.2701737Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-19T20:31:54.2713417Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-19T20:31:54.2722535Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-19T20:31:54.2731210Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-19T20:31:54.2738201Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-19T20:31:54.2745399Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-19T20:31:54.2755165Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-19T20:31:54.2768042Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-19T20:31:54.2779557Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-19T20:31:54.2795720Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-19T20:31:54.2805275Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-19T20:31:54.2824538Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-19T20:31:54.3079061Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-19T20:31:54.3082867Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-19T20:31:54.3139990Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-19T20:31:54.3267533Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-19T20:31:54.9582129Z Fetched 8451 kB in 0s (18.1 MB/s) 2021-05-19T20:31:54.9900483Z Selecting previously unselected package dctrl-tools. 2021-05-19T20:31:55.0088876Z (Reading database ... 2021-05-19T20:31:55.0089609Z (Reading database ... 5% 2021-05-19T20:31:55.0090388Z (Reading database ... 10% 2021-05-19T20:31:55.0091020Z (Reading database ... 15% 2021-05-19T20:31:55.0091427Z (Reading database ... 20% 2021-05-19T20:31:55.0091878Z (Reading database ... 25% 2021-05-19T20:31:55.0092299Z (Reading database ... 30% 2021-05-19T20:31:55.0092702Z (Reading database ... 35% 2021-05-19T20:31:55.0093089Z (Reading database ... 40% 2021-05-19T20:31:55.0093487Z (Reading database ... 45% 2021-05-19T20:31:55.0093897Z (Reading database ... 50% 2021-05-19T20:31:55.0397816Z (Reading database ... 55% 2021-05-19T20:31:55.0709113Z (Reading database ... 60% 2021-05-19T20:31:55.1047650Z (Reading database ... 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package libstrictures-perl. 2021-05-19T20:31:56.1014601Z Preparing to unpack .../013-libstrictures-perl_2.000006-1_all.deb ... 2021-05-19T20:31:56.1027407Z Unpacking libstrictures-perl (2.000006-1) ... 2021-05-19T20:31:56.1257402Z Selecting previously unselected package libsub-quote-perl. 2021-05-19T20:31:56.1481553Z Preparing to unpack .../014-libsub-quote-perl_2.006006-1_all.deb ... 2021-05-19T20:31:56.1493416Z Unpacking libsub-quote-perl (2.006006-1) ... 2021-05-19T20:31:56.1777111Z Selecting previously unselected package libmoo-perl. 2021-05-19T20:31:56.1935527Z Preparing to unpack .../015-libmoo-perl_2.003006-1_all.deb ... 2021-05-19T20:31:56.1953975Z Unpacking libmoo-perl (2.003006-1) ... 2021-05-19T20:31:56.2257260Z Selecting previously unselected package patchutils. 2021-05-19T20:31:56.2437809Z Preparing to unpack .../016-patchutils_0.3.4-2_amd64.deb ... 2021-05-19T20:31:56.2453501Z Unpacking patchutils (0.3.4-2) ... 2021-05-19T20:31:56.2804419Z Selecting previously unselected package wdiff. 2021-05-19T20:31:56.3008554Z Preparing to unpack .../017-wdiff_1.2.2-2build1_amd64.deb ... 2021-05-19T20:31:56.3025661Z Unpacking wdiff (1.2.2-2build1) ... 2021-05-19T20:31:56.3376918Z Selecting previously unselected package devscripts. 2021-05-19T20:31:56.3543053Z Preparing to unpack .../018-devscripts_2.20.2ubuntu2_amd64.deb ... 2021-05-19T20:31:56.3747826Z Unpacking devscripts (2.20.2ubuntu2) ... 2021-05-19T20:31:56.4976767Z Selecting previously unselected package diffstat. 2021-05-19T20:31:56.5153139Z Preparing to unpack .../019-diffstat_1.63-1_amd64.deb ... 2021-05-19T20:31:56.5168259Z Unpacking diffstat (1.63-1) ... 2021-05-19T20:31:56.5417364Z Selecting previously unselected package python3-gpg. 2021-05-19T20:31:56.5634616Z Preparing to unpack .../020-python3-gpg_1.13.1-7ubuntu2_amd64.deb ... 2021-05-19T20:31:56.5647134Z Unpacking python3-gpg (1.13.1-7ubuntu2) ... 2021-05-19T20:31:56.6336758Z Selecting previously unselected package dput. 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package libasync-mergepoint-perl. 2021-05-19T20:31:57.1608533Z Preparing to unpack .../029-libasync-mergepoint-perl_0.04-2_all.deb ... 2021-05-19T20:31:57.1618162Z Unpacking libasync-mergepoint-perl (0.04-2) ... 2021-05-19T20:31:57.1858756Z Selecting previously unselected package libmodule-implementation-perl. 2021-05-19T20:31:57.2063195Z Preparing to unpack .../030-libmodule-implementation-perl_0.09-1_all.deb ... 2021-05-19T20:31:57.2069417Z Unpacking libmodule-implementation-perl (0.09-1) ... 2021-05-19T20:31:57.2337777Z Selecting previously unselected package libsub-exporter-progressive-perl. 2021-05-19T20:31:57.2508293Z Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-1_all.deb ... 2021-05-19T20:31:57.2525036Z Unpacking libsub-exporter-progressive-perl (0.001013-1) ... 2021-05-19T20:31:57.2819400Z Selecting previously unselected package libvariable-magic-perl. 2021-05-19T20:31:57.2964201Z Preparing to unpack .../032-libvariable-magic-perl_0.62-1build2_amd64.deb 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previously unselected package libsub-exporter-perl. 2021-05-19T20:31:57.6519172Z Preparing to unpack .../040-libsub-exporter-perl_0.987-1_all.deb ... 2021-05-19T20:31:57.6537437Z Unpacking libsub-exporter-perl (0.987-1) ... 2021-05-19T20:31:57.6776302Z Selecting previously unselected package libconst-fast-perl. 2021-05-19T20:31:57.6992328Z Preparing to unpack .../041-libconst-fast-perl_0.014-1_all.deb ... 2021-05-19T20:31:57.7005980Z Unpacking libconst-fast-perl (0.014-1) ... 2021-05-19T20:31:57.7205665Z Selecting previously unselected package libwant-perl. 2021-05-19T20:31:57.7418103Z Preparing to unpack .../042-libwant-perl_0.29-1build4_amd64.deb ... 2021-05-19T20:31:57.7426965Z Unpacking libwant-perl (0.29-1build4) ... 2021-05-19T20:31:57.7698883Z Selecting previously unselected package libcontextual-return-perl. 2021-05-19T20:31:57.7874275Z Preparing to unpack .../043-libcontextual-return-perl_0.004014-2_all.deb ... 2021-05-19T20:31:57.7885705Z Unpacking libcontextual-return-perl 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2021-05-19T20:31:59.8285669Z Selecting previously unselected package libmoox-aliases-perl. 2021-05-19T20:31:59.8511518Z Preparing to unpack .../085-libmoox-aliases-perl_0.001006-1_all.deb ... 2021-05-19T20:31:59.8567772Z Unpacking libmoox-aliases-perl (0.001006-1) ... 2021-05-19T20:31:59.8804083Z Selecting previously unselected package libobject-id-perl. 2021-05-19T20:31:59.9029955Z Preparing to unpack .../086-libobject-id-perl_0.1.2-2ubuntu1_all.deb ... 2021-05-19T20:31:59.9039113Z Unpacking libobject-id-perl (0.1.2-2ubuntu1) ... 2021-05-19T20:31:59.9248154Z Selecting previously unselected package libmoox-struct-perl. 2021-05-19T20:31:59.9478941Z Preparing to unpack .../087-libmoox-struct-perl_0.017-1_all.deb ... 2021-05-19T20:31:59.9488131Z Unpacking libmoox-struct-perl (0.017-1) ... 2021-05-19T20:31:59.9753863Z Selecting previously unselected package libnet-dns-sec-perl. 2021-05-19T20:31:59.9940124Z Preparing to unpack .../088-libnet-dns-sec-perl_1.15-1_amd64.deb ... 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Done 2021-05-19T20:32:22.1558916Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-19T20:32:22.1662375Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-19T20:32:22.1962717Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-19T20:32:22.1963159Z env: 2021-05-19T20:32:22.1963513Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:22.1963921Z TIC_DEPLOY_KEY: 2021-05-19T20:32:22.1964574Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:22.1965956Z GITHUB_PAT: *** 2021-05-19T20:32:22.1966617Z COVERALLS_TOKEN: *** 2021-05-19T20:32:22.1967023Z continue-on-error: true 2021-05-19T20:32:22.1967401Z VDIFFR_RUN_TESTS: 2021-05-19T20:32:22.1967799Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:32:22.1968158Z TZ: UTC 2021-05-19T20:32:22.1968479Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:32:22.1968825Z NOT_CRAN: true 2021-05-19T20:32:22.1969128Z ##[endgroup] 2021-05-19T20:32:22.2419746Z [command]sudo apt-get install -y texinfo 2021-05-19T20:32:22.4995666Z Reading package lists... 2021-05-19T20:32:22.6601160Z Building dependency tree... 2021-05-19T20:32:22.6616683Z Reading state information... 2021-05-19T20:32:22.8681532Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-19T20:32:22.8687059Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:23.2530617Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-19T20:32:23.2672227Z --2021-05-19 20:32:23-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-19T20:32:23.2713280Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-19T20:32:23.2770256Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-19T20:32:23.3081991Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-19T20:32:23.3083859Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-19T20:32:23.3085483Z --2021-05-19 20:32:23-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-19T20:32:23.3830781Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-19T20:32:23.4453000Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-19T20:32:23.6612104Z HTTP request sent, awaiting response... 302 Found 2021-05-19T20:32:23.6617815Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=1UIdnd%2BxPeqP%2FdTfWm5KKe%2FqK%2BFnvY4etmS1AgKhtFU%3D&st=2021-05-19T20%3A31%3A23Z&se=2021-05-19T20%3A37%3A23Z&sp=r [following] 2021-05-19T20:32:23.6621690Z --2021-05-19 20:32:23-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=1UIdnd%2BxPeqP%2FdTfWm5KKe%2FqK%2BFnvY4etmS1AgKhtFU%3D&st=2021-05-19T20%3A31%3A23Z&se=2021-05-19T20%3A37%3A23Z&sp=r 2021-05-19T20:32:23.7018578Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-19T20:32:23.7631889Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-19T20:32:24.0017371Z HTTP request sent, awaiting response... 200 OK 2021-05-19T20:32:24.0018860Z Length: 67306919 (64M) [application/octet-stream] 2021-05-19T20:32:24.0020702Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-19T20:32:24.6136651Z 2021-05-19T20:32:26.2551111Z 0K ........ ........ ........ ........ 49% 14.9M 2s 2021-05-19T20:32:28.2791641Z 32768K ........ ........ ........ ........ 99% 15.4M 0s 2021-05-19T20:32:28.2792732Z 65536K 100% 2.94M=4.3s 2021-05-19T20:32:28.2793341Z 2021-05-19T20:32:28.2795294Z 2021-05-19 20:32:28 (15.0 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-19T20:32:28.2795727Z 2021-05-19T20:32:30.1880329Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-19T20:32:30.1881722Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-19T20:32:30.4382899Z ##[group]Run tlmgr update --self 2021-05-19T20:32:30.4383454Z tlmgr update --self 2021-05-19T20:32:30.4384248Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-19T20:32:30.4385077Z tlmgr update --all 2021-05-19T20:32:30.4429429Z shell: /usr/bin/bash -e {0} 2021-05-19T20:32:30.4429802Z env: 2021-05-19T20:32:30.4430238Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:30.4430674Z TIC_DEPLOY_KEY: 2021-05-19T20:32:30.4431416Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:30.4432989Z GITHUB_PAT: *** 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2021-05-19T20:32:39.1882377Z [66/89, 00:05/00:05] install: optex.x86_64-linux [1k] 2021-05-19T20:32:39.2571679Z [67/89, 00:05/00:05] install: optex [770k] 2021-05-19T20:32:39.3346013Z [68/89, 00:05/00:05] install: pdfarticle [4k] 2021-05-19T20:32:39.3795875Z [69/89, 00:05/00:05] install: pdfextra [22k] 2021-05-19T20:32:39.4254084Z [70/89, 00:05/00:05] install: placeat [4k] 2021-05-19T20:32:39.4700624Z [71/89, 00:05/00:05] install: plantuml [3k] 2021-05-19T20:32:39.5148150Z [72/89, 00:05/00:05] install: rsfs [55k] 2021-05-19T20:32:39.5650788Z [73/89, 00:05/00:05] install: selnolig [53k] 2021-05-19T20:32:39.6145917Z [74/89, 00:05/00:05] install: spelling [14k] 2021-05-19T20:32:39.6581480Z [75/89, 00:05/00:05] install: stricttex [2k] 2021-05-19T20:32:39.7021785Z [76/89, 00:05/00:05] install: texlive-common [1k] 2021-05-19T20:32:39.7461647Z [77/89, 00:05/00:05] install: texlive-en [1k] 2021-05-19T20:32:39.7922384Z [78/89, 00:05/00:05] install: texlive-msg-translations [144k] 2021-05-19T20:32:39.8604461Z [79/89, 00:05/00:05] install: thumbpdf.x86_64-linux [1k] 2021-05-19T20:32:39.9029218Z [80/89, 00:05/00:05] install: thumbpdf [19k] 2021-05-19T20:32:39.9469967Z [81/89, 00:05/00:05] install: tlshell.x86_64-linux [1k] 2021-05-19T20:32:39.9904463Z [82/89, 00:05/00:05] install: tlshell [29k] 2021-05-19T20:32:40.0373200Z [83/89, 00:06/00:06] install: typewriter [25k] 2021-05-19T20:32:40.0838243Z [84/89, 00:06/00:06] install: uninormalize [6k] 2021-05-19T20:32:40.1275485Z [85/89, 00:06/00:06] install: upquote [2k] 2021-05-19T20:32:40.1886369Z [86/89, 00:06/00:06] install: xdvi.x86_64-linux [530k] 2021-05-19T20:32:40.2752090Z [87/89, 00:06/00:06] install: xdvi [7k] 2021-05-19T20:32:40.3193815Z [88/89, 00:06/00:06] install: collection-basic [1k] 2021-05-19T20:32:40.3626825Z [89/89, 00:06/00:06] install: collection-luatex [1k] 2021-05-19T20:32:40.3815751Z running mktexlsr ... 2021-05-19T20:32:40.4658417Z done running mktexlsr. 2021-05-19T20:32:40.4912827Z running updmap-sys ... 2021-05-19T20:32:40.7266508Z done running updmap-sys. 2021-05-19T20:32:40.7267956Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-05-19T20:32:40.7269765Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/AcrWiLDbJt/_iKKidTmnU ... 2021-05-19T20:32:41.0626205Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/AcrWiLDbJt/_iKKidTmnU. 2021-05-19T20:32:41.0627809Z OK: optex.fmt/luatex 2021-05-19T20:32:41.0628994Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-19T20:32:41.0630361Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-19T20:32:42.2160775Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-19T20:32:42.3659061Z /home/runner/.TinyTeX/bin/x86_64-linux/tlmgr: (make_container __BACKUP_texlive-scripts.r59219.tar) install-tl does not exist 2021-05-19T20:32:42.3660408Z [1/2, ??:??/??:??] update: latexmk [92k] (59081 -> 59258) ... done 2021-05-19T20:32:42.4670764Z [2/2, 00:00/00:00] update: texlive-scripts [106k] (59219 -> 59251) ... done 2021-05-19T20:32:42.4671978Z running mktexlsr ... 2021-05-19T20:32:42.5361110Z done running mktexlsr. 2021-05-19T20:32:42.5622442Z running updmap-sys ... 2021-05-19T20:32:42.7971165Z done running updmap-sys. 2021-05-19T20:32:42.7972638Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-19T20:32:42.7974064Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-19T20:32:42.8733553Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-19T20:32:42.8734013Z with: 2021-05-19T20:32:42.8734390Z pandoc-version: 2.7.3 2021-05-19T20:32:42.8734762Z env: 2021-05-19T20:32:42.8735152Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:42.8735849Z TIC_DEPLOY_KEY: 2021-05-19T20:32:42.8736577Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:42.8738148Z GITHUB_PAT: *** 2021-05-19T20:32:42.8738894Z COVERALLS_TOKEN: *** 2021-05-19T20:32:42.8739341Z continue-on-error: true 2021-05-19T20:32:42.8739791Z VDIFFR_RUN_TESTS: 2021-05-19T20:32:42.8740247Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:32:42.8740651Z TZ: UTC 2021-05-19T20:32:42.8741024Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:32:42.8741402Z NOT_CRAN: true 2021-05-19T20:32:42.8741757Z ##[endgroup] 2021-05-19T20:32:43.1665291Z [command]sudo apt-get install -y gdebi-core 2021-05-19T20:32:43.2311147Z Reading package lists... 2021-05-19T20:32:43.3934079Z Building dependency tree... 2021-05-19T20:32:43.3953307Z Reading state information... 2021-05-19T20:32:43.6187724Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-19T20:32:43.6188950Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:43.6224763Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-19T20:32:43.7234922Z 2021-05-19T20:32:43.7378010Z Reading package lists... 0% 2021-05-19T20:32:43.7378777Z 2021-05-19T20:32:43.7418734Z Reading package lists... 100% 2021-05-19T20:32:43.7419362Z 2021-05-19T20:32:43.7419762Z 2021-05-19T20:32:43.7420358Z Reading package lists... Done 2021-05-19T20:32:43.7420835Z 2021-05-19T20:32:43.7421452Z Building dependency tree... 0% 2021-05-19T20:32:43.7421936Z 2021-05-19T20:32:43.7704006Z Building dependency tree... 0% 2021-05-19T20:32:43.7704958Z 2021-05-19T20:32:43.7705703Z Building dependency tree... 50% 2021-05-19T20:32:43.7706265Z 2021-05-19T20:32:43.8920963Z Building dependency tree... 50% 2021-05-19T20:32:43.8921964Z 2021-05-19T20:32:43.8922713Z Building dependency tree 2021-05-19T20:32:43.8923288Z 2021-05-19T20:32:43.8923997Z Reading state information... 0% 2021-05-19T20:32:43.8924581Z 2021-05-19T20:32:44.0379341Z Reading state information... 0% 2021-05-19T20:32:44.0380294Z 2021-05-19T20:32:44.0380763Z 2021-05-19T20:32:44.0381525Z Reading state information... Done 2021-05-19T20:32:44.0382960Z 2021-05-19T20:32:44.0383673Z Reading state information... 0% 2021-05-19T20:32:44.0425602Z 2021-05-19T20:32:44.0426297Z Reading state information... 1% 2021-05-19T20:32:44.0458997Z 2021-05-19T20:32:44.0459668Z Reading state information... 3% 2021-05-19T20:32:44.0493890Z 2021-05-19T20:32:44.0494549Z Reading state information... 5% 2021-05-19T20:32:44.0529149Z 2021-05-19T20:32:44.0529854Z Reading state information... 7% 2021-05-19T20:32:44.0561132Z 2021-05-19T20:32:44.0561810Z Reading state information... 9% 2021-05-19T20:32:44.0593723Z 2021-05-19T20:32:44.0594457Z Reading state information... 11% 2021-05-19T20:32:44.0628122Z 2021-05-19T20:32:44.0628837Z Reading state information... 13% 2021-05-19T20:32:44.0661375Z 2021-05-19T20:32:44.0662047Z Reading state information... 15% 2021-05-19T20:32:44.0693754Z 2021-05-19T20:32:44.0694914Z Reading state information... 17% 2021-05-19T20:32:44.0729809Z 2021-05-19T20:32:44.0730468Z Reading state information... 19% 2021-05-19T20:32:44.0783974Z 2021-05-19T20:32:44.0784770Z Reading state information... 21% 2021-05-19T20:32:44.0795840Z 2021-05-19T20:32:44.0796466Z Reading state information... 23% 2021-05-19T20:32:44.0834866Z 2021-05-19T20:32:44.0835597Z Reading state information... 25% 2021-05-19T20:32:44.0873261Z 2021-05-19T20:32:44.0873966Z Reading state information... 27% 2021-05-19T20:32:44.0909731Z 2021-05-19T20:32:44.0910231Z Reading state information... 29% 2021-05-19T20:32:44.0946117Z 2021-05-19T20:32:44.0946598Z Reading state information... 31% 2021-05-19T20:32:44.0982147Z 2021-05-19T20:32:44.0982950Z Reading state information... 33% 2021-05-19T20:32:44.1014852Z 2021-05-19T20:32:44.1015344Z Reading state information... 35% 2021-05-19T20:32:44.1046955Z 2021-05-19T20:32:44.1047463Z Reading state information... 37% 2021-05-19T20:32:44.1083882Z 2021-05-19T20:32:44.1084360Z Reading state information... 39% 2021-05-19T20:32:44.1120738Z 2021-05-19T20:32:44.1121225Z Reading state information... 41% 2021-05-19T20:32:44.1154104Z 2021-05-19T20:32:44.1154600Z Reading state information... 43% 2021-05-19T20:32:44.1193284Z 2021-05-19T20:32:44.1193792Z Reading state information... 45% 2021-05-19T20:32:44.1247516Z 2021-05-19T20:32:44.1247998Z Reading state information... 47% 2021-05-19T20:32:44.1282643Z 2021-05-19T20:32:44.1283133Z Reading state information... 49% 2021-05-19T20:32:44.1321373Z 2021-05-19T20:32:44.1321864Z Reading state information... 51% 2021-05-19T20:32:44.1355886Z 2021-05-19T20:32:44.1356382Z Reading state information... 53% 2021-05-19T20:32:44.1390749Z 2021-05-19T20:32:44.1391248Z Reading state information... 55% 2021-05-19T20:32:44.1427759Z 2021-05-19T20:32:44.1428250Z Reading state information... 57% 2021-05-19T20:32:44.1465632Z 2021-05-19T20:32:44.1466123Z Reading state information... 59% 2021-05-19T20:32:44.1506800Z 2021-05-19T20:32:44.1507304Z Reading state information... 61% 2021-05-19T20:32:44.1542166Z 2021-05-19T20:32:44.1542645Z Reading state information... 63% 2021-05-19T20:32:44.1575375Z 2021-05-19T20:32:44.1576062Z Reading state information... 65% 2021-05-19T20:32:44.1609795Z 2021-05-19T20:32:44.1610290Z Reading state information... 67% 2021-05-19T20:32:44.1644138Z 2021-05-19T20:32:44.1644649Z Reading state information... 69% 2021-05-19T20:32:44.1688718Z 2021-05-19T20:32:44.1689203Z Reading state information... 71% 2021-05-19T20:32:44.1720376Z 2021-05-19T20:32:44.1720869Z Reading state information... 73% 2021-05-19T20:32:44.1754383Z 2021-05-19T20:32:44.1754876Z Reading state information... 75% 2021-05-19T20:32:44.1799291Z 2021-05-19T20:32:44.1799825Z Reading state information... 77% 2021-05-19T20:32:44.1833991Z 2021-05-19T20:32:44.1834476Z Reading state information... 79% 2021-05-19T20:32:44.1869345Z 2021-05-19T20:32:44.1869845Z Reading state information... 81% 2021-05-19T20:32:44.1904622Z 2021-05-19T20:32:44.1905116Z Reading state information... 83% 2021-05-19T20:32:44.1940147Z 2021-05-19T20:32:44.1940655Z Reading state information... 85% 2021-05-19T20:32:44.1974360Z 2021-05-19T20:32:44.1974849Z Reading state information... 87% 2021-05-19T20:32:44.2008838Z 2021-05-19T20:32:44.2009325Z Reading state information... 89% 2021-05-19T20:32:44.2040697Z 2021-05-19T20:32:44.2041181Z Reading state information... 91% 2021-05-19T20:32:44.2074863Z 2021-05-19T20:32:44.2075352Z Reading state information... 93% 2021-05-19T20:32:44.2115385Z 2021-05-19T20:32:44.2115869Z Reading state information... 95% 2021-05-19T20:32:44.2145314Z 2021-05-19T20:32:44.2145824Z Reading state information... 97% 2021-05-19T20:32:44.2179571Z 2021-05-19T20:32:44.2180095Z Reading state information... 99% 2021-05-19T20:32:44.4634787Z Selecting previously unselected package pandoc. 2021-05-19T20:32:44.5726046Z (Reading database ... 235970 files and directories currently installed.) 2021-05-19T20:32:44.5821692Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-19T20:32:44.5830907Z Unpacking pandoc (2.7.3-1) ... 2021-05-19T20:32:46.4442395Z Setting up pandoc (2.7.3-1) ... 2021-05-19T20:32:46.4470166Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:32:47.0976119Z 2021-05-19T20:32:47.0976997Z 2021-05-19T20:32:47.0977623Z Reading state information... Done 2021-05-19T20:32:47.1272358Z ##[group]Run git config user.name adigherman 2021-05-19T20:32:47.1273071Z git config user.name adigherman 2021-05-19T20:32:47.1273836Z git config user.email adig@jhu.edu 2021-05-19T20:32:47.1314585Z shell: /usr/bin/bash -e {0} 2021-05-19T20:32:47.1315009Z env: 2021-05-19T20:32:47.1315520Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:47.1316071Z TIC_DEPLOY_KEY: 2021-05-19T20:32:47.1316898Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:47.1318460Z GITHUB_PAT: *** 2021-05-19T20:32:47.1319372Z COVERALLS_TOKEN: *** 2021-05-19T20:32:47.1319988Z continue-on-error: true 2021-05-19T20:32:47.1320530Z VDIFFR_RUN_TESTS: 2021-05-19T20:32:47.1321087Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:32:47.1321542Z TZ: UTC 2021-05-19T20:32:47.1321987Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:32:47.1322422Z NOT_CRAN: true 2021-05-19T20:32:47.1338409Z ##[endgroup] 2021-05-19T20:32:47.1640307Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-19T20:32:47.1640881Z env: 2021-05-19T20:32:47.1641311Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:32:47.1641738Z TIC_DEPLOY_KEY: 2021-05-19T20:32:47.1642481Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:32:47.1644003Z GITHUB_PAT: *** 2021-05-19T20:32:47.1644735Z COVERALLS_TOKEN: *** 2021-05-19T20:32:47.1645196Z continue-on-error: true 2021-05-19T20:32:47.1645641Z VDIFFR_RUN_TESTS: 2021-05-19T20:32:47.1646080Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:32:47.1646498Z TZ: UTC 2021-05-19T20:32:47.1646866Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:32:47.1647252Z NOT_CRAN: true 2021-05-19T20:32:47.1647606Z ##[endgroup] 2021-05-19T20:32:47.4562662Z Reading package lists... 2021-05-19T20:32:47.6158686Z Building dependency tree... 2021-05-19T20:32:47.6175111Z Reading state information... 2021-05-19T20:32:47.7459955Z The following additional packages will be installed: 2021-05-19T20:32:47.7463908Z cmake-data libjsoncpp1 librhash0 2021-05-19T20:32:47.7469826Z Suggested packages: 2021-05-19T20:32:47.7470813Z cmake-doc ninja-build 2021-05-19T20:32:47.7922509Z The following NEW packages will be installed: 2021-05-19T20:32:47.7932531Z cmake cmake-data libjsoncpp1 librhash0 2021-05-19T20:32:47.8121407Z 0 upgraded, 4 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:47.8122479Z Need to get 5470 kB of archives. 2021-05-19T20:32:47.8123520Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-19T20:32:47.8125500Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-19T20:32:47.8316176Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-19T20:32:47.8322283Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-19T20:32:47.8330927Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-19T20:32:48.2291726Z Fetched 5470 kB in 0s (84.8 MB/s) 2021-05-19T20:32:48.2628838Z Selecting previously unselected package cmake-data. 2021-05-19T20:32:48.2700003Z (Reading database ... 2021-05-19T20:32:48.2700649Z (Reading database ... 5% 2021-05-19T20:32:48.2701265Z (Reading database ... 10% 2021-05-19T20:32:48.2701815Z (Reading database ... 15% 2021-05-19T20:32:48.2702370Z (Reading database ... 20% 2021-05-19T20:32:48.2702951Z (Reading database ... 25% 2021-05-19T20:32:48.2703507Z (Reading database ... 30% 2021-05-19T20:32:48.2704055Z (Reading database ... 35% 2021-05-19T20:32:48.2704628Z (Reading database ... 40% 2021-05-19T20:32:48.2705182Z (Reading database ... 45% 2021-05-19T20:32:48.2705735Z (Reading database ... 50% 2021-05-19T20:32:48.2786896Z (Reading database ... 55% 2021-05-19T20:32:48.2836549Z (Reading database ... 60% 2021-05-19T20:32:48.2866180Z (Reading database ... 65% 2021-05-19T20:32:48.2930813Z (Reading database ... 70% 2021-05-19T20:32:48.2957679Z (Reading database ... 75% 2021-05-19T20:32:48.2989993Z (Reading database ... 80% 2021-05-19T20:32:48.3304203Z (Reading database ... 85% 2021-05-19T20:32:48.3397927Z (Reading database ... 90% 2021-05-19T20:32:48.3775974Z (Reading database ... 95% 2021-05-19T20:32:48.3776592Z (Reading database ... 100% 2021-05-19T20:32:48.3777374Z (Reading database ... 235977 files and directories currently installed.) 2021-05-19T20:32:48.3873857Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-19T20:32:48.4244532Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-19T20:32:48.9736760Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-19T20:32:48.9973501Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-19T20:32:48.9988904Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-19T20:32:49.0272328Z Selecting previously unselected package librhash0:amd64. 2021-05-19T20:32:49.0511899Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-19T20:32:49.0521428Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-19T20:32:49.0817349Z Selecting previously unselected package cmake. 2021-05-19T20:32:49.1042407Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-19T20:32:49.1052583Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-19T20:32:49.4998534Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-19T20:32:49.5084430Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-19T20:32:49.5453977Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-19T20:32:49.5475029Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-19T20:32:49.5508704Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:32:50.5118986Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:32:52.2678419Z Reading package lists... 2021-05-19T20:32:52.4214325Z Building dependency tree... 2021-05-19T20:32:52.4230627Z Reading state information... 2021-05-19T20:32:52.5590043Z Suggested packages: 2021-05-19T20:32:52.5592858Z libssh-doc 2021-05-19T20:32:52.6060768Z The following NEW packages will be installed: 2021-05-19T20:32:52.6063080Z libssh-dev 2021-05-19T20:32:52.6280115Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:52.6280686Z Need to get 219 kB of archives. 2021-05-19T20:32:52.6281283Z After this operation, 1127 kB of additional disk space will be used. 2021-05-19T20:32:52.6282845Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-19T20:32:52.9966405Z Fetched 219 kB in 0s (7799 kB/s) 2021-05-19T20:32:53.0298101Z Selecting previously unselected package libssh-dev:amd64. 2021-05-19T20:32:53.0321328Z (Reading database ... 2021-05-19T20:32:53.0321763Z (Reading database ... 5% 2021-05-19T20:32:53.0322343Z (Reading database ... 10% 2021-05-19T20:32:53.0322825Z (Reading database ... 15% 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and directories currently installed.) 2021-05-19T20:32:53.1447321Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-19T20:32:53.1460971Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-19T20:32:53.2143705Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-19T20:32:54.8935802Z Reading package lists... 2021-05-19T20:32:55.0521700Z Building dependency tree... 2021-05-19T20:32:55.0540207Z Reading state information... 2021-05-19T20:32:55.2476286Z The following NEW packages will be installed: 2021-05-19T20:32:55.2482405Z jags 2021-05-19T20:32:55.2759589Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:55.2760440Z Need to get 1562 kB of archives. 2021-05-19T20:32:55.2761463Z After this operation, 3615 kB of additional disk space will be used. 2021-05-19T20:32:55.2763718Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-19T20:32:55.7005195Z Fetched 1562 kB in 0s (19.3 MB/s) 2021-05-19T20:32:55.7297034Z Selecting previously unselected package jags. 2021-05-19T20:32:55.7361712Z (Reading database ... 2021-05-19T20:32:55.7362822Z (Reading database ... 5% 2021-05-19T20:32:55.7363353Z (Reading database ... 10% 2021-05-19T20:32:55.7363753Z (Reading database ... 15% 2021-05-19T20:32:55.7364161Z (Reading database ... 20% 2021-05-19T20:32:55.7364551Z (Reading database ... 25% 2021-05-19T20:32:55.7364952Z (Reading database ... 30% 2021-05-19T20:32:55.7365355Z (Reading database ... 35% 2021-05-19T20:32:55.7365741Z (Reading database ... 40% 2021-05-19T20:32:55.7366138Z (Reading database ... 45% 2021-05-19T20:32:55.7366521Z (Reading database ... 50% 2021-05-19T20:32:55.7457120Z (Reading database ... 55% 2021-05-19T20:32:55.7507937Z (Reading database ... 60% 2021-05-19T20:32:55.7532813Z (Reading database ... 65% 2021-05-19T20:32:55.7592220Z (Reading database ... 70% 2021-05-19T20:32:55.7615364Z (Reading database ... 75% 2021-05-19T20:32:55.7645570Z (Reading database ... 80% 2021-05-19T20:32:55.7947147Z (Reading database ... 85% 2021-05-19T20:32:55.8036027Z (Reading database ... 90% 2021-05-19T20:32:55.8378314Z (Reading database ... 95% 2021-05-19T20:32:55.8379432Z (Reading database ... 100% 2021-05-19T20:32:55.8380480Z (Reading database ... 238780 files and directories currently installed.) 2021-05-19T20:32:55.8475361Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-19T20:32:55.8494015Z Unpacking jags (4.3.0-3build1) ... 2021-05-19T20:32:55.9917158Z Setting up jags (4.3.0-3build1) ... 2021-05-19T20:32:56.0007258Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:32:56.6122647Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:32:58.2758427Z Reading package lists... 2021-05-19T20:32:58.4322904Z Building dependency tree... 2021-05-19T20:32:58.4338749Z Reading state information... 2021-05-19T20:32:58.5734949Z The following additional packages will be installed: 2021-05-19T20:32:58.5736829Z libnode64 libuv1-dev 2021-05-19T20:32:58.6224468Z The following NEW packages will be installed: 2021-05-19T20:32:58.6229766Z libnode-dev libnode64 libuv1-dev 2021-05-19T20:32:58.6407822Z 0 upgraded, 3 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:32:58.6408469Z Need to get 6239 kB of archives. 2021-05-19T20:32:58.6409079Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-19T20:32:58.6410769Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-19T20:32:58.6435562Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-19T20:32:58.6879017Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-19T20:32:59.0512883Z Fetched 6239 kB in 0s (98.2 MB/s) 2021-05-19T20:32:59.0789233Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-19T20:32:59.0850035Z (Reading database ... 2021-05-19T20:32:59.0850715Z (Reading database ... 5% 2021-05-19T20:32:59.0851306Z (Reading database ... 10% 2021-05-19T20:32:59.0851877Z (Reading database ... 15% 2021-05-19T20:32:59.0852455Z (Reading database ... 20% 2021-05-19T20:32:59.0853028Z (Reading database ... 25% 2021-05-19T20:32:59.0853578Z (Reading database ... 30% 2021-05-19T20:32:59.0854136Z (Reading database ... 35% 2021-05-19T20:32:59.0854700Z (Reading database ... 40% 2021-05-19T20:32:59.0855253Z (Reading database ... 45% 2021-05-19T20:32:59.0856079Z (Reading database ... 50% 2021-05-19T20:32:59.0933175Z (Reading database ... 55% 2021-05-19T20:32:59.0975840Z (Reading database ... 60% 2021-05-19T20:32:59.0999377Z (Reading database ... 65% 2021-05-19T20:32:59.1059766Z (Reading database ... 70% 2021-05-19T20:32:59.1082393Z (Reading database ... 75% 2021-05-19T20:32:59.1112004Z (Reading database ... 80% 2021-05-19T20:32:59.1393500Z (Reading database ... 85% 2021-05-19T20:32:59.1488042Z (Reading database ... 90% 2021-05-19T20:32:59.1847284Z (Reading database ... 95% 2021-05-19T20:32:59.1848366Z (Reading database ... 100% 2021-05-19T20:32:59.1849338Z (Reading database ... 238920 files and directories currently installed.) 2021-05-19T20:32:59.1949287Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-19T20:32:59.1958537Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-19T20:32:59.2298310Z Selecting previously unselected package libnode64:amd64. 2021-05-19T20:32:59.2479056Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:32:59.2502971Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:32:59.8534943Z Selecting previously unselected package libnode-dev:amd64. 2021-05-19T20:32:59.8746239Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:32:59.8755793Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:32:59.9582495Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-19T20:32:59.9614207Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:32:59.9643298Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-19T20:32:59.9668795Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:01.7139627Z Reading package lists... 2021-05-19T20:33:01.8700509Z Building dependency tree... 2021-05-19T20:33:01.8716163Z Reading state information... 2021-05-19T20:33:02.0065817Z The following additional packages will be installed: 2021-05-19T20:33:02.0068441Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-19T20:33:02.0072983Z Suggested packages: 2021-05-19T20:33:02.0073906Z libfftw3-doc 2021-05-19T20:33:02.0541425Z The following NEW packages will be installed: 2021-05-19T20:33:02.0547562Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-19T20:33:02.0711196Z 0 upgraded, 5 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:02.0712202Z Need to get 3986 kB of archives. 2021-05-19T20:33:02.0712930Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-19T20:33:02.0714713Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-19T20:33:02.0800470Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-19T20:33:02.0966950Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-19T20:33:02.1085545Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-19T20:33:02.1090930Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-19T20:33:02.5032691Z Fetched 3986 kB in 0s (46.5 MB/s) 2021-05-19T20:33:02.5338172Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-19T20:33:02.5394826Z (Reading database ... 2021-05-19T20:33:02.5395687Z (Reading database ... 5% 2021-05-19T20:33:02.5396345Z (Reading database ... 10% 2021-05-19T20:33:02.5396978Z (Reading database ... 15% 2021-05-19T20:33:02.5397600Z (Reading database ... 20% 2021-05-19T20:33:02.5398228Z (Reading database ... 25% 2021-05-19T20:33:02.5398874Z (Reading database ... 30% 2021-05-19T20:33:02.5399486Z (Reading database ... 35% 2021-05-19T20:33:02.5400106Z (Reading database ... 40% 2021-05-19T20:33:02.5400724Z (Reading database ... 45% 2021-05-19T20:33:02.5401330Z (Reading database ... 50% 2021-05-19T20:33:02.5478599Z (Reading database ... 55% 2021-05-19T20:33:02.5525350Z (Reading database ... 60% 2021-05-19T20:33:02.5551618Z (Reading database ... 65% 2021-05-19T20:33:02.5616161Z (Reading database ... 70% 2021-05-19T20:33:02.5640392Z (Reading database ... 75% 2021-05-19T20:33:02.5672107Z (Reading database ... 80% 2021-05-19T20:33:02.5968423Z (Reading database ... 85% 2021-05-19T20:33:02.6078734Z (Reading database ... 90% 2021-05-19T20:33:02.6448454Z (Reading database ... 95% 2021-05-19T20:33:02.6449010Z (Reading database ... 100% 2021-05-19T20:33:02.6449814Z (Reading database ... 239056 files and directories currently installed.) 2021-05-19T20:33:02.6550016Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:02.6572432Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:02.7137871Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-19T20:33:02.7283650Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:02.7297959Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:02.8138176Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-19T20:33:02.8291654Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:02.8305169Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:02.9098308Z Selecting previously unselected package libfftw3-bin. 2021-05-19T20:33:02.9319223Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:02.9334775Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-19T20:33:02.9657629Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-19T20:33:02.9827182Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-19T20:33:02.9838720Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2252893Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2278600Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2302856Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2326947Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2355253Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-19T20:33:03.2385524Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:03.9404243Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:05.6023185Z Reading package lists... 2021-05-19T20:33:05.7607992Z Building dependency tree... 2021-05-19T20:33:05.7624989Z Reading state information... 2021-05-19T20:33:05.9041930Z The following additional packages will be installed: 2021-05-19T20:33:05.9045596Z libdcmtk14 2021-05-19T20:33:05.9515123Z The following NEW packages will be installed: 2021-05-19T20:33:05.9522757Z dcmtk libdcmtk14 2021-05-19T20:33:05.9778537Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:05.9779568Z Need to get 5546 kB of archives. 2021-05-19T20:33:05.9780700Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-19T20:33:05.9782514Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-19T20:33:06.7260474Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-19T20:33:06.7267415Z Fetched 5546 kB in 0s (21.9 MB/s) 2021-05-19T20:33:06.7268483Z Selecting previously unselected package libdcmtk14. 2021-05-19T20:33:06.7269393Z (Reading database ... 2021-05-19T20:33:06.7270128Z (Reading database ... 5% 2021-05-19T20:33:06.7270881Z (Reading database ... 10% 2021-05-19T20:33:06.7271597Z (Reading database ... 15% 2021-05-19T20:33:06.7272012Z (Reading database ... 20% 2021-05-19T20:33:06.7272421Z (Reading database ... 25% 2021-05-19T20:33:06.7272822Z (Reading database ... 30% 2021-05-19T20:33:06.7273221Z (Reading database ... 35% 2021-05-19T20:33:06.7273604Z (Reading database ... 40% 2021-05-19T20:33:06.7274001Z (Reading database ... 45% 2021-05-19T20:33:06.7274397Z (Reading database ... 50% 2021-05-19T20:33:06.7274781Z (Reading database ... 55% 2021-05-19T20:33:06.7275174Z (Reading database ... 60% 2021-05-19T20:33:06.7275557Z (Reading database ... 65% 2021-05-19T20:33:06.7275955Z (Reading database ... 70% 2021-05-19T20:33:06.7276355Z (Reading database ... 75% 2021-05-19T20:33:06.7276795Z (Reading database ... 80% 2021-05-19T20:33:06.7277424Z (Reading database ... 85% 2021-05-19T20:33:06.7277808Z (Reading database ... 90% 2021-05-19T20:33:06.7278203Z (Reading database ... 95% 2021-05-19T20:33:06.7278607Z (Reading database ... 100% 2021-05-19T20:33:06.7279206Z (Reading database ... 239147 files and directories currently installed.) 2021-05-19T20:33:06.7280450Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-19T20:33:06.7327777Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-19T20:33:07.1977793Z Selecting previously unselected package dcmtk. 2021-05-19T20:33:07.2136052Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-19T20:33:07.2189643Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-19T20:33:07.3434441Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-19T20:33:07.3463146Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-19T20:33:07.3572073Z Adding `dcmtk' group to system ... 2021-05-19T20:33:07.4028084Z Adding `dcmtk' user to system ... 2021-05-19T20:33:07.4609529Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-19T20:33:07.7172228Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:09.1479940Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:10.9088682Z Reading package lists... 2021-05-19T20:33:11.0775070Z Building dependency tree... 2021-05-19T20:33:11.0791802Z Reading state information... 2021-05-19T20:33:11.3020840Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-19T20:33:11.3022223Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:11.3617203Z Reading package lists... 2021-05-19T20:33:11.5327789Z Building dependency tree... 2021-05-19T20:33:11.5345802Z Reading state information... 2021-05-19T20:33:11.7784715Z libpng-dev is already the newest version (1.6.37-2). 2021-05-19T20:33:11.7785902Z libpng-dev set to manually installed. 2021-05-19T20:33:11.7786723Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:11.8377313Z Reading package lists... 2021-05-19T20:33:12.0101682Z Building dependency tree... 2021-05-19T20:33:12.0119624Z Reading state information... 2021-05-19T20:33:12.1684075Z The following additional packages will be installed: 2021-05-19T20:33:12.1686639Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-19T20:33:12.1691145Z Suggested packages: 2021-05-19T20:33:12.1692655Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-19T20:33:12.1695115Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-19T20:33:12.1697671Z fonts-arphic-uming fonts-nanum 2021-05-19T20:33:12.2179156Z The following NEW packages will be installed: 2021-05-19T20:33:12.2181128Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-19T20:33:12.2185747Z libpoppler97 poppler-data 2021-05-19T20:33:12.2363424Z 0 upgraded, 6 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:12.2364346Z Need to get 2582 kB of archives. 2021-05-19T20:33:12.2365912Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-19T20:33:12.2367742Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-19T20:33:12.2524176Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-19T20:33:12.2539195Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-19T20:33:12.2659305Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-19T20:33:12.2666788Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-19T20:33:12.2671618Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-19T20:33:12.6356672Z Fetched 2582 kB in 0s (57.6 MB/s) 2021-05-19T20:33:12.6648965Z Selecting previously unselected package poppler-data. 2021-05-19T20:33:12.6719637Z (Reading database ... 2021-05-19T20:33:12.6720481Z (Reading database ... 5% 2021-05-19T20:33:12.6721102Z (Reading database ... 10% 2021-05-19T20:33:12.6721682Z (Reading database ... 15% 2021-05-19T20:33:12.6722260Z (Reading database ... 20% 2021-05-19T20:33:12.6723029Z (Reading database ... 25% 2021-05-19T20:33:12.6723772Z (Reading database ... 30% 2021-05-19T20:33:12.6724447Z (Reading database ... 35% 2021-05-19T20:33:12.6725010Z (Reading database ... 40% 2021-05-19T20:33:12.6725548Z (Reading database ... 45% 2021-05-19T20:33:12.6726094Z (Reading database ... 50% 2021-05-19T20:33:12.6812647Z (Reading database ... 55% 2021-05-19T20:33:12.6864180Z (Reading database ... 60% 2021-05-19T20:33:12.6891635Z (Reading database ... 65% 2021-05-19T20:33:12.6958297Z (Reading database ... 70% 2021-05-19T20:33:12.6980928Z (Reading database ... 75% 2021-05-19T20:33:12.7011500Z (Reading database ... 80% 2021-05-19T20:33:12.7319773Z (Reading database ... 85% 2021-05-19T20:33:12.7433253Z (Reading database ... 90% 2021-05-19T20:33:12.7808341Z (Reading database ... 95% 2021-05-19T20:33:12.7809275Z (Reading database ... 100% 2021-05-19T20:33:12.7810241Z (Reading database ... 239382 files and directories currently installed.) 2021-05-19T20:33:12.7913287Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-19T20:33:12.7924777Z Unpacking poppler-data (0.4.9-2) ... 2021-05-19T20:33:13.0098249Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-19T20:33:13.0288798Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-19T20:33:13.0307241Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-19T20:33:13.0625833Z Selecting previously unselected package libpoppler97:amd64. 2021-05-19T20:33:13.0866948Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:13.0880496Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.1974443Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-19T20:33:13.2159052Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:13.2168847Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.2458867Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-19T20:33:13.2648948Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:13.2658972Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.2898590Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-19T20:33:13.3086997Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:13.3095097Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.3610703Z Setting up poppler-data (0.4.9-2) ... 2021-05-19T20:33:13.3722526Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-19T20:33:13.3746019Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.3768640Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.3792948Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.3816558Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-19T20:33:13.3852162Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:33:13.4254115Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:15.1241639Z Reading package lists... 2021-05-19T20:33:15.2909490Z Building dependency tree... 2021-05-19T20:33:15.2927112Z Reading state information... 2021-05-19T20:33:15.4394482Z The following additional packages will be installed: 2021-05-19T20:33:15.4398518Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-19T20:33:15.4404239Z Suggested packages: 2021-05-19T20:33:15.4404947Z libhdf5-doc 2021-05-19T20:33:15.4875677Z The following NEW packages will be installed: 2021-05-19T20:33:15.4879729Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-19T20:33:15.4882433Z libsz2 2021-05-19T20:33:15.5713499Z 0 upgraded, 7 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:15.5714320Z Need to get 4074 kB of archives. 2021-05-19T20:33:15.5715086Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-19T20:33:15.5717832Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-19T20:33:15.5785869Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-19T20:33:15.5937288Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-19T20:33:15.6009580Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-19T20:33:15.6563543Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-19T20:33:15.9057544Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-19T20:33:15.9142704Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-19T20:33:16.3660378Z Fetched 4074 kB in 1s (7949 kB/s) 2021-05-19T20:33:16.3937961Z Selecting previously unselected package hdf5-helpers. 2021-05-19T20:33:16.3993662Z (Reading database ... 2021-05-19T20:33:16.3994133Z (Reading database ... 5% 2021-05-19T20:33:16.3994548Z (Reading database ... 10% 2021-05-19T20:33:16.3994967Z (Reading database ... 15% 2021-05-19T20:33:16.3995360Z (Reading database ... 20% 2021-05-19T20:33:16.3995764Z (Reading database ... 25% 2021-05-19T20:33:16.3996153Z (Reading database ... 30% 2021-05-19T20:33:16.3998089Z (Reading database ... 35% 2021-05-19T20:33:16.3998510Z (Reading database ... 40% 2021-05-19T20:33:16.3998899Z (Reading database ... 45% 2021-05-19T20:33:16.3999298Z (Reading database ... 50% 2021-05-19T20:33:16.4081973Z (Reading database ... 55% 2021-05-19T20:33:16.4127030Z (Reading database ... 60% 2021-05-19T20:33:16.4159211Z (Reading database ... 65% 2021-05-19T20:33:16.4212734Z (Reading database ... 70% 2021-05-19T20:33:16.4235641Z (Reading database ... 75% 2021-05-19T20:33:16.4265983Z (Reading database ... 80% 2021-05-19T20:33:16.4542224Z (Reading database ... 85% 2021-05-19T20:33:16.4645172Z (Reading database ... 90% 2021-05-19T20:33:16.4999794Z (Reading database ... 95% 2021-05-19T20:33:16.5000715Z (Reading database ... 100% 2021-05-19T20:33:16.5001657Z (Reading database ... 239942 files and directories currently installed.) 2021-05-19T20:33:16.5100930Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:16.5108369Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:16.5417843Z Selecting previously unselected package libaec0:amd64. 2021-05-19T20:33:16.5590096Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-19T20:33:16.5607063Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-19T20:33:16.5896815Z Selecting previously unselected package libsz2:amd64. 2021-05-19T20:33:16.6076464Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-19T20:33:16.6086803Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-19T20:33:16.6377661Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-19T20:33:16.6544637Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:16.6556809Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:16.7891235Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-19T20:33:16.8131553Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:16.8140876Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:16.8497273Z Selecting previously unselected package libaec-dev:amd64. 2021-05-19T20:33:16.8684292Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-19T20:33:16.9929792Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-19T20:33:17.0218740Z Selecting previously unselected package libhdf5-dev. 2021-05-19T20:33:17.0394369Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-19T20:33:17.0406646Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:17.3262746Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:17.3286242Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-19T20:33:17.3311737Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-19T20:33:17.3334908Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-19T20:33:17.3362596Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:17.3383056Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:17.3405868Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-19T20:33:17.3482982Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-19T20:33:17.3510421Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:18.0070109Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:19.6887737Z Reading package lists... 2021-05-19T20:33:19.8491927Z Building dependency tree... 2021-05-19T20:33:19.8508791Z Reading state information... 2021-05-19T20:33:19.9883870Z The following additional packages will be installed: 2021-05-19T20:33:19.9886637Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-19T20:33:20.0378515Z The following NEW packages will be installed: 2021-05-19T20:33:20.0383321Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-19T20:33:20.0385365Z mesa-common-dev 2021-05-19T20:33:20.0569871Z 0 upgraded, 6 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:20.0570579Z Need to get 1761 kB of archives. 2021-05-19T20:33:20.0571278Z After this operation, 5442 kB of additional disk space will be used. 2021-05-19T20:33:20.0573387Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-19T20:33:20.0629385Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-19T20:33:20.0636372Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-19T20:33:20.0652854Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-19T20:33:20.0674606Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-19T20:33:20.0702132Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-19T20:33:20.5116130Z Fetched 1761 kB in 0s (16.1 MB/s) 2021-05-19T20:33:20.5378112Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-19T20:33:20.5440896Z (Reading database ... 2021-05-19T20:33:20.5441599Z (Reading database ... 5% 2021-05-19T20:33:20.5442269Z (Reading database ... 10% 2021-05-19T20:33:20.5442908Z (Reading database ... 15% 2021-05-19T20:33:20.5443522Z (Reading database ... 20% 2021-05-19T20:33:20.5444147Z (Reading database ... 25% 2021-05-19T20:33:20.5444784Z (Reading database ... 30% 2021-05-19T20:33:20.5445393Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-19T20:33:20.6858163Z Selecting previously unselected package libglx-dev:amd64. 2021-05-19T20:33:20.7087239Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:20.7099292Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:20.7486727Z Selecting previously unselected package libgl-dev:amd64. 2021-05-19T20:33:20.7647321Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:20.7658806Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:20.8058324Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-19T20:33:20.8241125Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-19T20:33:20.8261247Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:20.8657268Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-19T20:33:20.8824555Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-19T20:33:20.8834000Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:20.9297587Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-19T20:33:20.9445290Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:33:20.9456892Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:33:21.0926234Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-19T20:33:21.0960426Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:21.0982711Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:21.1002711Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:33:21.1027935Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-19T20:33:21.1063424Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:33:21.1090549Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:22.3957179Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:24.0518328Z Reading package lists... 2021-05-19T20:33:24.2130569Z Building dependency tree... 2021-05-19T20:33:24.2147104Z Reading state information... 2021-05-19T20:33:24.3621077Z The following additional packages will be installed: 2021-05-19T20:33:24.3624372Z libprotobuf-lite17 libprotoc17 2021-05-19T20:33:24.4094858Z The following NEW packages will be installed: 2021-05-19T20:33:24.4097428Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-19T20:33:24.4098550Z protobuf-compiler 2021-05-19T20:33:24.4265360Z 0 upgraded, 5 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:24.4265988Z Need to get 2754 kB of archives. 2021-05-19T20:33:24.4267162Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-19T20:33:24.4268737Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-19T20:33:24.4299841Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-19T20:33:24.4434594Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-19T20:33:24.4667471Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-19T20:33:24.4862399Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-19T20:33:24.8510373Z Fetched 2754 kB in 0s (37.8 MB/s) 2021-05-19T20:33:24.8791846Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-19T20:33:24.8863499Z (Reading database ... 2021-05-19T20:33:24.8864251Z (Reading database ... 5% 2021-05-19T20:33:24.8864836Z (Reading database ... 10% 2021-05-19T20:33:24.8865391Z (Reading database ... 15% 2021-05-19T20:33:24.8865949Z (Reading database ... 20% 2021-05-19T20:33:24.8866513Z (Reading database ... 25% 2021-05-19T20:33:24.8867276Z (Reading database ... 30% 2021-05-19T20:33:24.8867867Z (Reading database ... 35% 2021-05-19T20:33:24.8868433Z (Reading database ... 40% 2021-05-19T20:33:24.8868972Z (Reading database ... 45% 2021-05-19T20:33:24.8869521Z (Reading database ... 50% 2021-05-19T20:33:24.8952302Z (Reading database ... 55% 2021-05-19T20:33:24.8996898Z (Reading database ... 60% 2021-05-19T20:33:24.9032198Z (Reading database ... 65% 2021-05-19T20:33:24.9086136Z (Reading database ... 70% 2021-05-19T20:33:24.9109215Z (Reading database ... 75% 2021-05-19T20:33:24.9140258Z (Reading database ... 80% 2021-05-19T20:33:24.9430927Z (Reading database ... 85% 2021-05-19T20:33:24.9537654Z (Reading database ... 90% 2021-05-19T20:33:24.9903572Z (Reading database ... 95% 2021-05-19T20:33:24.9907077Z (Reading database ... 100% 2021-05-19T20:33:24.9907890Z (Reading database ... 240633 files and directories currently installed.) 2021-05-19T20:33:25.0004839Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:25.0031015Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.0417617Z Selecting previously unselected package libprotoc17:amd64. 2021-05-19T20:33:25.0601347Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:25.0612428Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.1497320Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-19T20:33:25.1654767Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:25.1663466Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.3138392Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-19T20:33:25.3350097Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:25.3359335Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.4377839Z Selecting previously unselected package protobuf-compiler. 2021-05-19T20:33:25.4545375Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-19T20:33:25.4556498Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5145279Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5178534Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5204739Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5233000Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5259350Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-19T20:33:25.5293494Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:26.1361760Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:27.8226971Z Reading package lists... 2021-05-19T20:33:27.9844547Z Building dependency tree... 2021-05-19T20:33:27.9864266Z Reading state information... 2021-05-19T20:33:28.1365350Z The following additional packages will be installed: 2021-05-19T20:33:28.1367777Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-19T20:33:28.1369486Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-19T20:33:28.1370869Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-19T20:33:28.1372441Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-19T20:33:28.1374132Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-19T20:33:28.1378733Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-19T20:33:28.1380142Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-19T20:33:28.1381830Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-19T20:33:28.1383109Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-19T20:33:28.1384373Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-19T20:33:28.1385846Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-19T20:33:28.1387093Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-19T20:33:28.1388277Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-19T20:33:28.1389449Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-19T20:33:28.1390171Z Suggested packages: 2021-05-19T20:33:28.1391248Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-19T20:33:28.1392552Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-19T20:33:28.1393973Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-19T20:33:28.1395270Z nvidia-legacy-304xx-vdpau-driver 2021-05-19T20:33:28.2107518Z The following NEW packages will be installed: 2021-05-19T20:33:28.2109625Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-19T20:33:28.2110909Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-19T20:33:28.2111888Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-19T20:33:28.2113029Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-19T20:33:28.2114194Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-19T20:33:28.2115339Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-19T20:33:28.2116484Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-19T20:33:28.2117632Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-19T20:33:28.2118724Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-19T20:33:28.2119856Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-19T20:33:28.2120996Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-19T20:33:28.2122060Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-19T20:33:28.2123100Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-19T20:33:28.2124120Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-19T20:33:28.2319092Z 0 upgraded, 76 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:28.2319802Z Need to get 47.1 MB of archives. 2021-05-19T20:33:28.2320480Z After this operation, 195 MB of additional disk space will be used. 2021-05-19T20:33:28.2322678Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-19T20:33:28.2499819Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-19T20:33:28.2504912Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-19T20:33:28.2509625Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-19T20:33:28.2513970Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-19T20:33:28.2519438Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-19T20:33:28.2525095Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-19T20:33:28.2547216Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-19T20:33:28.3076504Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-19T20:33:28.3083452Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-19T20:33:28.3096330Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-19T20:33:28.3111808Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-19T20:33:28.3117045Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-19T20:33:28.3121027Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-19T20:33:28.3128617Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-19T20:33:28.3136030Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-19T20:33:28.3143367Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-19T20:33:28.3155844Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-19T20:33:28.3161689Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-19T20:33:28.3168445Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-19T20:33:28.3176329Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-19T20:33:28.3211431Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-19T20:33:28.3280590Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-19T20:33:28.3296102Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-19T20:33:28.3300549Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-19T20:33:28.3318038Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-19T20:33:28.3715949Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-19T20:33:28.3720749Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-19T20:33:28.3725491Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-19T20:33:28.3733276Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-19T20:33:28.3747269Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-19T20:33:28.3752904Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-19T20:33:28.3762805Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-19T20:33:28.3772829Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-19T20:33:28.3813756Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-19T20:33:28.3832175Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-19T20:33:28.3913779Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-19T20:33:28.3917511Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-19T20:33:28.4726645Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-19T20:33:28.4731920Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-19T20:33:28.4737224Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-19T20:33:28.4742986Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-19T20:33:28.4749362Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-19T20:33:28.4753209Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-19T20:33:28.4761018Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-19T20:33:28.4828548Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-19T20:33:28.4836339Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-19T20:33:28.4850950Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-19T20:33:28.4857069Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-19T20:33:28.4945723Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-19T20:33:28.4965006Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-19T20:33:28.4972518Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-19T20:33:28.4976347Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-19T20:33:28.4980845Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-19T20:33:28.4988361Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-19T20:33:28.4993357Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-19T20:33:28.5012134Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-19T20:33:28.5024905Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-19T20:33:28.5028740Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-19T20:33:28.5063020Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-19T20:33:28.5066266Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-19T20:33:28.5075038Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-19T20:33:28.5088340Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-19T20:33:28.5111646Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-19T20:33:28.5141468Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-19T20:33:28.5149554Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-19T20:33:28.5156767Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-19T20:33:28.5275754Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-19T20:33:28.5284044Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-19T20:33:28.5396709Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-19T20:33:28.5401082Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-19T20:33:28.5406351Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-19T20:33:28.5620002Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-19T20:33:28.5843946Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-19T20:33:28.5905717Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-19T20:33:28.5936303Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-19T20:33:29.1120043Z Fetched 47.1 MB in 0s (126 MB/s) 2021-05-19T20:33:29.1417379Z Selecting previously unselected package libaom0:amd64. 2021-05-19T20:33:29.1463638Z (Reading database ... 2021-05-19T20:33:29.1464269Z (Reading database ... 5% 2021-05-19T20:33:29.1464872Z (Reading database ... 10% 2021-05-19T20:33:29.1465429Z (Reading database ... 15% 2021-05-19T20:33:29.1466015Z (Reading database ... 20% 2021-05-19T20:33:29.1466573Z (Reading database ... 25% 2021-05-19T20:33:29.1467119Z (Reading database ... 30% 2021-05-19T20:33:29.1467666Z (Reading database ... 35% 2021-05-19T20:33:29.1468218Z (Reading database ... 40% 2021-05-19T20:33:29.1468761Z (Reading database ... 45% 2021-05-19T20:33:29.1469312Z (Reading database ... 50% 2021-05-19T20:33:29.1556729Z (Reading database ... 55% 2021-05-19T20:33:29.1601118Z (Reading database ... 60% 2021-05-19T20:33:29.1633708Z (Reading database ... 65% 2021-05-19T20:33:29.1688350Z (Reading database ... 70% 2021-05-19T20:33:29.1712198Z (Reading database ... 75% 2021-05-19T20:33:29.1977855Z (Reading database ... 80% 2021-05-19T20:33:29.2042912Z (Reading database ... 85% 2021-05-19T20:33:29.2151931Z (Reading database ... 90% 2021-05-19T20:33:29.2523479Z (Reading database ... 95% 2021-05-19T20:33:29.2524077Z (Reading database ... 100% 2021-05-19T20:33:29.2524865Z (Reading database ... 240804 files and directories currently installed.) 2021-05-19T20:33:29.2620318Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-19T20:33:29.2642965Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-19T20:33:29.3817970Z Selecting previously unselected package libva2:amd64. 2021-05-19T20:33:29.3998622Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-19T20:33:29.4012350Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-19T20:33:29.4338341Z Selecting previously unselected package libva-drm2:amd64. 2021-05-19T20:33:29.4508794Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-19T20:33:29.4518749Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-19T20:33:29.4778300Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-19T20:33:29.4968948Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-19T20:33:29.4982732Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-19T20:33:29.5297369Z Selecting previously unselected package libvdpau1:amd64. 2021-05-19T20:33:29.5443092Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-19T20:33:29.5457475Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-19T20:33:29.5857796Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-19T20:33:29.6056142Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-19T20:33:29.6066598Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 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libmp3lame0:amd64 (3.100-3) ... 2021-05-19T20:33:30.5216873Z Selecting previously unselected package libopus0:amd64. 2021-05-19T20:33:30.5397961Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-19T20:33:30.5412953Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-19T20:33:30.5856775Z Selecting previously unselected package libshine3:amd64. 2021-05-19T20:33:30.6013942Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-19T20:33:30.6027332Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-19T20:33:30.6336790Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-19T20:33:30.6505326Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-19T20:33:30.6515021Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-19T20:33:30.6776788Z Selecting previously unselected package libspeex1:amd64. 2021-05-19T20:33:30.6972485Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 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package libbs2b0:amd64. 2021-05-19T20:33:32.6921257Z Preparing to unpack .../36-libbs2b0_3.1.0+dfsg-2.2build1_amd64.deb ... 2021-05-19T20:33:32.6933740Z Unpacking libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-19T20:33:32.7233239Z Selecting previously unselected package libflite1:amd64. 2021-05-19T20:33:32.7460739Z Preparing to unpack .../37-libflite1_2.1-release-3_amd64.deb ... 2021-05-19T20:33:32.7470351Z Unpacking libflite1:amd64 (2.1-release-3) ... 2021-05-19T20:33:33.7000047Z Selecting previously unselected package libserd-0-0:amd64. 2021-05-19T20:33:33.7224909Z Preparing to unpack .../38-libserd-0-0_0.30.2-1_amd64.deb ... 2021-05-19T20:33:33.7233529Z Unpacking libserd-0-0:amd64 (0.30.2-1) ... 2021-05-19T20:33:33.7487190Z Selecting previously unselected package libsord-0-0:amd64. 2021-05-19T20:33:33.7730177Z Preparing to unpack .../39-libsord-0-0_0.16.4-1_amd64.deb ... 2021-05-19T20:33:33.7739259Z Unpacking libsord-0-0:amd64 (0.16.4-1) ... 2021-05-19T20:33:33.7956266Z Selecting previously unselected package libsratom-0-0:amd64. 2021-05-19T20:33:33.8197112Z Preparing to unpack .../40-libsratom-0-0_0.6.4-1_amd64.deb ... 2021-05-19T20:33:33.8207161Z Unpacking libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-19T20:33:33.8497005Z Selecting previously unselected package liblilv-0-0:amd64. 2021-05-19T20:33:33.8668850Z Preparing to unpack .../41-liblilv-0-0_0.24.6-1ubuntu0.1_amd64.deb ... 2021-05-19T20:33:33.8681659Z Unpacking liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-19T20:33:33.8936340Z Selecting previously unselected package libmysofa1:amd64. 2021-05-19T20:33:33.9180268Z Preparing to unpack .../42-libmysofa1_1.0~dfsg0-1_amd64.deb ... 2021-05-19T20:33:33.9191739Z Unpacking libmysofa1:amd64 (1.0~dfsg0-1) ... 2021-05-19T20:33:33.9420078Z Selecting previously unselected package libpostproc55:amd64. 2021-05-19T20:33:33.9662725Z Preparing to unpack .../43-libpostproc55_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-19T20:33:33.9672200Z Unpacking libpostproc55:amd64 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(2.7.0-2) ... 2021-05-19T20:33:36.9791579Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:36.9816178Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-19T20:33:36.9839557Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-19T20:33:36.9866079Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-19T20:33:36.9891727Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-19T20:33:36.9914548Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-19T20:33:36.9938474Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:36.9961239Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-19T20:33:36.9982266Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-19T20:33:37.0004912Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-19T20:33:37.0092062Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0111568Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0135111Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0157074Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-19T20:33:37.0180238Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-19T20:33:37.0200910Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0221124Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0243865Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0266015Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-19T20:33:37.0347874Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:37.9920952Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:39.7869726Z Reading package lists... 2021-05-19T20:33:39.9536134Z Building dependency tree... 2021-05-19T20:33:39.9554303Z Reading state information... 2021-05-19T20:33:40.1013874Z The following additional packages will be installed: 2021-05-19T20:33:40.1016543Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-19T20:33:40.1539194Z The following NEW packages will be installed: 2021-05-19T20:33:40.1541188Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-19T20:33:40.1544407Z libmagick++-dev 2021-05-19T20:33:40.1776946Z 0 upgraded, 4 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:40.1777950Z Need to get 309 kB of archives. 2021-05-19T20:33:40.1779265Z After this operation, 2202 kB of additional disk space will be used. 2021-05-19T20:33:40.1781319Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-19T20:33:40.1833213Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-19T20:33:40.1935382Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-19T20:33:40.2085001Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-19T20:33:40.6055992Z Fetched 309 kB in 0s (6181 kB/s) 2021-05-19T20:33:40.6369708Z Selecting previously unselected package libmagick++-6-headers. 2021-05-19T20:33:40.6444575Z (Reading database ... 2021-05-19T20:33:40.6445207Z (Reading database ... 5% 2021-05-19T20:33:40.6445780Z (Reading database ... 10% 2021-05-19T20:33:40.6446312Z (Reading database ... 15% 2021-05-19T20:33:40.6446850Z (Reading database ... 20% 2021-05-19T20:33:40.6447386Z (Reading database ... 25% 2021-05-19T20:33:40.6447910Z (Reading database ... 30% 2021-05-19T20:33:40.6448441Z (Reading database ... 35% 2021-05-19T20:33:40.6448958Z (Reading database ... 40% 2021-05-19T20:33:40.6449484Z (Reading database ... 45% 2021-05-19T20:33:40.6450012Z (Reading database ... 50% 2021-05-19T20:33:40.6536482Z (Reading database ... 55% 2021-05-19T20:33:40.6576125Z (Reading database ... 60% 2021-05-19T20:33:40.6617877Z (Reading database ... 65% 2021-05-19T20:33:40.6666209Z (Reading database ... 70% 2021-05-19T20:33:40.6693095Z (Reading database ... 75% 2021-05-19T20:33:40.6977542Z (Reading database ... 80% 2021-05-19T20:33:40.7007101Z (Reading database ... 85% 2021-05-19T20:33:40.7104794Z (Reading database ... 90% 2021-05-19T20:33:40.7474116Z (Reading database ... 95% 2021-05-19T20:33:40.7474789Z (Reading database ... 100% 2021-05-19T20:33:40.7475587Z (Reading database ... 241345 files and directories currently installed.) 2021-05-19T20:33:40.7576424Z Preparing to unpack .../libmagick++-6-headers_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-19T20:33:40.7657442Z Unpacking libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:40.8058174Z Selecting previously unselected package libmagick++-6.q16-8:amd64. 2021-05-19T20:33:40.8242946Z Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-19T20:33:40.8263583Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:40.8617380Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-19T20:33:40.8835328Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-19T20:33:40.8847747Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:40.9338589Z Selecting previously unselected package libmagick++-dev. 2021-05-19T20:33:40.9527842Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-19T20:33:40.9603162Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:41.0116655Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:41.0200355Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:41.0219914Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:41.0237754Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-19T20:33:41.0352592Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:42.8142776Z Reading package lists... 2021-05-19T20:33:42.9768956Z Building dependency tree... 2021-05-19T20:33:42.9790283Z Reading state information... 2021-05-19T20:33:43.1281252Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-19T20:33:43.1283325Z The following additional packages will be installed: 2021-05-19T20:33:43.1285104Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-19T20:33:43.1286419Z libijs-0.35 libjbig2dec0 2021-05-19T20:33:43.1289826Z Suggested packages: 2021-05-19T20:33:43.1292319Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-19T20:33:43.1294601Z ghostscript-x 2021-05-19T20:33:43.1796508Z The following NEW packages will be installed: 2021-05-19T20:33:43.1798773Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-19T20:33:43.1804215Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-19T20:33:43.1988328Z 0 upgraded, 8 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:43.1989184Z Need to get 11.2 MB of archives. 2021-05-19T20:33:43.1989960Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-19T20:33:43.1991902Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-19T20:33:43.2310362Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-19T20:33:43.2326591Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-19T20:33:43.3388059Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-19T20:33:43.3507599Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-19T20:33:43.3512771Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-19T20:33:43.3520658Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-19T20:33:43.3921626Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-19T20:33:43.7852531Z Fetched 11.2 MB in 0s (53.8 MB/s) 2021-05-19T20:33:43.8173263Z Selecting previously unselected package fonts-droid-fallback. 2021-05-19T20:33:43.8250601Z (Reading database ... 2021-05-19T20:33:43.8251525Z (Reading database ... 5% 2021-05-19T20:33:43.8253681Z (Reading database ... 10% 2021-05-19T20:33:43.8254299Z (Reading database ... 15% 2021-05-19T20:33:43.8255074Z (Reading database ... 20% 2021-05-19T20:33:43.8256371Z (Reading database ... 25% 2021-05-19T20:33:43.8256959Z (Reading database ... 30% 2021-05-19T20:33:43.8257521Z (Reading database ... 35% 2021-05-19T20:33:43.8258098Z (Reading database ... 40% 2021-05-19T20:33:43.8258676Z (Reading database ... 45% 2021-05-19T20:33:43.8259241Z (Reading database ... 50% 2021-05-19T20:33:43.8354765Z (Reading database ... 55% 2021-05-19T20:33:43.8396982Z (Reading database ... 60% 2021-05-19T20:33:43.8443181Z (Reading database ... 65% 2021-05-19T20:33:43.8494009Z (Reading database ... 70% 2021-05-19T20:33:43.8522069Z (Reading database ... 75% 2021-05-19T20:33:43.8825577Z (Reading database ... 80% 2021-05-19T20:33:43.8854663Z (Reading database ... 85% 2021-05-19T20:33:43.8957793Z (Reading database ... 90% 2021-05-19T20:33:43.9355057Z (Reading database ... 95% 2021-05-19T20:33:43.9356203Z (Reading database ... 100% 2021-05-19T20:33:43.9357177Z (Reading database ... 241390 files and directories currently installed.) 2021-05-19T20:33:43.9461690Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-19T20:33:43.9679970Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-19T20:33:44.1618226Z Selecting previously unselected package fonts-noto-mono. 2021-05-19T20:33:44.1813712Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-19T20:33:44.1844999Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-19T20:33:44.2143802Z Selecting previously unselected package fonts-urw-base35. 2021-05-19T20:33:44.2387586Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-19T20:33:44.2967226Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-19T20:33:44.6628269Z Selecting previously unselected package libgs9-common. 2021-05-19T20:33:44.6870647Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-19T20:33:44.6878394Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:44.7818241Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-19T20:33:44.8029728Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-19T20:33:44.8050552Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-19T20:33:44.8338016Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-19T20:33:44.8525247Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-19T20:33:44.8539646Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-19T20:33:44.8897407Z Selecting previously unselected package libgs9:amd64. 2021-05-19T20:33:44.9084576Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-19T20:33:44.9092387Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:45.1617259Z Selecting previously unselected package ghostscript. 2021-05-19T20:33:45.1801412Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-19T20:33:45.1816307Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:45.2422134Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-19T20:33:45.2458269Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-19T20:33:45.2486537Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-19T20:33:45.3062316Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-19T20:33:46.2338614Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-19T20:33:46.2341213Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:46.2342297Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:46.2343277Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-19T20:33:46.2344684Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:33:46.2345604Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:46.2346385Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:33:48.1685646Z Reading package lists... 2021-05-19T20:33:48.3459281Z Building dependency tree... 2021-05-19T20:33:48.3479433Z Reading state information... 2021-05-19T20:33:48.5041580Z The following additional packages will be installed: 2021-05-19T20:33:48.5044820Z libudunits2-0 libudunits2-data 2021-05-19T20:33:48.5549137Z The following NEW packages will be installed: 2021-05-19T20:33:48.5555928Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-19T20:33:48.5736867Z 0 upgraded, 3 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:48.5737779Z Need to get 429 kB of archives. 2021-05-19T20:33:48.5738558Z After this operation, 1026 kB of additional disk space will be used. 2021-05-19T20:33:48.5740413Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-19T20:33:48.5752241Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-19T20:33:48.5758395Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-19T20:33:48.9753686Z Fetched 429 kB in 0s (21.6 MB/s) 2021-05-19T20:33:49.0058046Z Selecting previously unselected package libudunits2-data. 2021-05-19T20:33:49.0124680Z (Reading database ... 2021-05-19T20:33:49.0125236Z (Reading database ... 5% 2021-05-19T20:33:49.0125680Z (Reading database ... 10% 2021-05-19T20:33:49.0126339Z (Reading database ... 15% 2021-05-19T20:33:49.0126776Z (Reading database ... 20% 2021-05-19T20:33:49.0127223Z (Reading database ... 25% 2021-05-19T20:33:49.0127669Z (Reading database ... 30% 2021-05-19T20:33:49.0128104Z (Reading database ... 35% 2021-05-19T20:33:49.0128548Z (Reading database ... 40% 2021-05-19T20:33:49.0129079Z (Reading database ... 45% 2021-05-19T20:33:49.0129535Z (Reading database ... 50% 2021-05-19T20:33:49.0233531Z (Reading database ... 55% 2021-05-19T20:33:49.0273850Z (Reading database ... 60% 2021-05-19T20:33:49.0319129Z (Reading database ... 65% 2021-05-19T20:33:49.0366856Z (Reading database ... 70% 2021-05-19T20:33:49.0394391Z (Reading database ... 75% 2021-05-19T20:33:49.0688929Z (Reading database ... 80% 2021-05-19T20:33:49.0717084Z (Reading database ... 85% 2021-05-19T20:33:49.0819045Z (Reading database ... 90% 2021-05-19T20:33:49.1198956Z (Reading database ... 95% 2021-05-19T20:33:49.1200084Z (Reading database ... 100% 2021-05-19T20:33:49.1201104Z (Reading database ... 241954 files and directories currently installed.) 2021-05-19T20:33:49.1304890Z Preparing to unpack .../libudunits2-data_2.2.26-5_all.deb ... 2021-05-19T20:33:49.1316642Z Unpacking libudunits2-data (2.2.26-5) ... 2021-05-19T20:33:49.1577906Z Selecting previously unselected package libudunits2-0:amd64. 2021-05-19T20:33:49.1793121Z Preparing to unpack .../libudunits2-0_2.2.26-5_amd64.deb ... 2021-05-19T20:33:49.1810927Z Unpacking libudunits2-0:amd64 (2.2.26-5) ... 2021-05-19T20:33:49.2137277Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-19T20:33:49.2302182Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-19T20:33:49.2322267Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-19T20:33:49.3036197Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-19T20:33:49.3060090Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-19T20:33:49.3085153Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-19T20:33:49.3112114Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:33:49.4149392Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:51.1734493Z Reading package lists... 2021-05-19T20:33:51.3499925Z Building dependency tree... 2021-05-19T20:33:51.3522407Z Reading state information... 2021-05-19T20:33:51.5526257Z The following NEW packages will be installed: 2021-05-19T20:33:51.5533880Z libjq-dev 2021-05-19T20:33:51.5753940Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:51.5754649Z Need to get 11.2 kB of archives. 2021-05-19T20:33:51.5755317Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-19T20:33:51.5757166Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-19T20:33:51.9684854Z Fetched 11.2 kB in 0s (619 kB/s) 2021-05-19T20:33:51.9968612Z Selecting previously unselected package libjq-dev:amd64. 2021-05-19T20:33:52.0046219Z (Reading database ... 2021-05-19T20:33:52.0046924Z (Reading database ... 5% 2021-05-19T20:33:52.0047575Z (Reading database ... 10% 2021-05-19T20:33:52.0048246Z (Reading database ... 15% 2021-05-19T20:33:52.0048867Z (Reading database ... 20% 2021-05-19T20:33:52.0049498Z (Reading database ... 25% 2021-05-19T20:33:52.0050175Z (Reading database ... 30% 2021-05-19T20:33:52.0050789Z (Reading database ... 35% 2021-05-19T20:33:52.0051420Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-19T20:33:53.9001925Z Reading package lists... 2021-05-19T20:33:54.0751413Z Building dependency tree... 2021-05-19T20:33:54.0771098Z Reading state information... 2021-05-19T20:33:54.2875155Z The following NEW packages will be installed: 2021-05-19T20:33:54.2880401Z libmng2 2021-05-19T20:33:54.3151914Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:54.3152637Z Need to get 168 kB of archives. 2021-05-19T20:33:54.3153502Z After this operation, 571 kB of additional disk space will be used. 2021-05-19T20:33:54.3155424Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-19T20:33:54.7515358Z Fetched 168 kB in 0s (3204 kB/s) 2021-05-19T20:33:54.7811922Z Selecting previously unselected package libmng2:amd64. 2021-05-19T20:33:54.7887907Z (Reading database ... 2021-05-19T20:33:54.7888690Z (Reading database ... 5% 2021-05-19T20:33:54.7889280Z (Reading database ... 10% 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2021-05-19T20:33:54.8949231Z (Reading database ... 241989 files and directories currently installed.) 2021-05-19T20:33:54.9048994Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-19T20:33:54.9070524Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-19T20:33:54.9747611Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-19T20:33:54.9779496Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:33:56.7379646Z Reading package lists... 2021-05-19T20:33:56.9019956Z Building dependency tree... 2021-05-19T20:33:56.9038181Z Reading state information... 2021-05-19T20:33:57.1169910Z E: Unable to locate package libmng1 2021-05-19T20:33:57.1820870Z Reading package lists... 2021-05-19T20:33:57.3514581Z Building dependency tree... 2021-05-19T20:33:57.3533655Z Reading state information... 2021-05-19T20:33:57.4796504Z E: Unable to locate package libapparmor-devel 2021-05-19T20:33:57.5384400Z Reading package lists... 2021-05-19T20:33:57.7033704Z Building dependency tree... 2021-05-19T20:33:57.7051431Z Reading state information... 2021-05-19T20:33:57.8482806Z The following additional packages will be installed: 2021-05-19T20:33:57.8485422Z libij-java 2021-05-19T20:33:57.8950995Z The following NEW packages will be installed: 2021-05-19T20:33:57.8958457Z imagej libij-java 2021-05-19T20:33:57.9207830Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:33:57.9209001Z Need to get 2328 kB of archives. 2021-05-19T20:33:57.9210160Z After this operation, 2498 kB of additional disk space will be used. 2021-05-19T20:33:57.9211828Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-19T20:33:58.0630149Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-19T20:33:58.4587599Z Fetched 2328 kB in 0s (14.0 MB/s) 2021-05-19T20:33:58.4866833Z Selecting previously unselected package libij-java. 2021-05-19T20:33:58.4943622Z (Reading 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90% 2021-05-19T20:33:58.6042821Z (Reading database ... 95% 2021-05-19T20:33:58.6043420Z (Reading database ... 100% 2021-05-19T20:33:58.6044232Z (Reading database ... 241995 files and directories currently installed.) 2021-05-19T20:33:58.6144221Z Preparing to unpack .../libij-java_1.52r-1_all.deb ... 2021-05-19T20:33:58.6154094Z Unpacking libij-java (1.52r-1) ... 2021-05-19T20:33:58.6937903Z Selecting previously unselected package imagej. 2021-05-19T20:33:58.7142363Z Preparing to unpack .../imagej_1.52r-1_all.deb ... 2021-05-19T20:33:58.7151170Z Unpacking imagej (1.52r-1) ... 2021-05-19T20:33:58.7793126Z Setting up libij-java (1.52r-1) ... 2021-05-19T20:33:58.7823441Z Setting up imagej (1.52r-1) ... 2021-05-19T20:33:58.7854616Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-19T20:33:59.4875986Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:00.1256637Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-19T20:34:01.9163827Z Reading package lists... 2021-05-19T20:34:02.0883799Z Building dependency tree... 2021-05-19T20:34:02.0902311Z Reading state information... 2021-05-19T20:34:02.2384947Z Suggested packages: 2021-05-19T20:34:02.2387874Z bowtie2-examples 2021-05-19T20:34:02.2875754Z The following NEW packages will be installed: 2021-05-19T20:34:02.2884874Z bowtie2 2021-05-19T20:34:02.3197482Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:02.3198569Z Need to get 1324 kB of archives. 2021-05-19T20:34:02.3199726Z After this operation, 5630 kB of additional disk space will be used. 2021-05-19T20:34:02.3201512Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-19T20:34:03.2378093Z Fetched 1324 kB in 0s (6456 kB/s) 2021-05-19T20:34:03.2379480Z Selecting previously unselected package bowtie2. 2021-05-19T20:34:03.2380224Z (Reading database ... 2021-05-19T20:34:03.2380790Z (Reading database ... 5% 2021-05-19T20:34:03.2381371Z (Reading database ... 10% 2021-05-19T20:34:03.2381954Z (Reading database ... 15% 2021-05-19T20:34:03.2382505Z (Reading database ... 20% 2021-05-19T20:34:03.2383066Z (Reading database ... 25% 2021-05-19T20:34:03.2383637Z (Reading database ... 30% 2021-05-19T20:34:03.2384201Z (Reading database ... 35% 2021-05-19T20:34:03.2384761Z (Reading database ... 40% 2021-05-19T20:34:03.2385321Z (Reading database ... 45% 2021-05-19T20:34:03.2385864Z (Reading database ... 50% 2021-05-19T20:34:03.2386410Z (Reading database ... 55% 2021-05-19T20:34:03.2386971Z (Reading database ... 60% 2021-05-19T20:34:03.2387534Z (Reading database ... 65% 2021-05-19T20:34:03.2388091Z (Reading database ... 70% 2021-05-19T20:34:03.2388652Z (Reading database ... 75% 2021-05-19T20:34:03.2389192Z (Reading database ... 80% 2021-05-19T20:34:03.2389976Z (Reading database ... 85% 2021-05-19T20:34:03.2390540Z (Reading database ... 90% 2021-05-19T20:34:03.2391103Z (Reading database ... 95% 2021-05-19T20:34:03.2391672Z (Reading database ... 100% 2021-05-19T20:34:03.2392481Z (Reading database ... 242018 files and directories currently installed.) 2021-05-19T20:34:03.2394158Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-19T20:34:03.2395127Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-19T20:34:03.2395946Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-19T20:34:03.2396791Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:05.7382968Z Reading package lists... 2021-05-19T20:34:05.9054084Z Building dependency tree... 2021-05-19T20:34:05.9073677Z Reading state information... 2021-05-19T20:34:06.0627449Z E: Unable to locate package install 2021-05-19T20:34:06.0628615Z E: Unable to locate package gdal 2021-05-19T20:34:06.1244855Z Reading package lists... 2021-05-19T20:34:06.3032256Z Building dependency tree... 2021-05-19T20:34:06.3051393Z Reading state information... 2021-05-19T20:34:06.3304614Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-19T20:34:06.3305741Z This may mean that the package is missing, has been obsoleted, or 2021-05-19T20:34:06.3306496Z is only available from another source 2021-05-19T20:34:06.3306867Z 2021-05-19T20:34:06.4264535Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-19T20:34:06.4868440Z Reading package lists... 2021-05-19T20:34:06.6613310Z Building dependency tree... 2021-05-19T20:34:06.6631930Z Reading state information... 2021-05-19T20:34:06.6869301Z Package libav-tools is not available, but is referred to by another package. 2021-05-19T20:34:06.6870925Z This may mean that the package is missing, has been obsoleted, or 2021-05-19T20:34:06.6871941Z is only available from another source 2021-05-19T20:34:06.6872865Z However the following packages replace it: 2021-05-19T20:34:06.6873615Z ffmpeg 2021-05-19T20:34:06.6874096Z 2021-05-19T20:34:06.7809069Z E: Package 'libav-tools' has no installation candidate 2021-05-19T20:34:06.8410657Z Reading package lists... 2021-05-19T20:34:07.0104523Z Building dependency tree... 2021-05-19T20:34:07.0123176Z Reading state information... 2021-05-19T20:34:07.1618503Z The following additional packages will be installed: 2021-05-19T20:34:07.1620887Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-19T20:34:07.1622773Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-19T20:34:07.1624033Z libssh2-1-dev 2021-05-19T20:34:07.1626311Z Suggested packages: 2021-05-19T20:34:07.1627357Z libgcrypt20-doc libmbedtls-doc 2021-05-19T20:34:07.2129154Z The following NEW packages will be installed: 2021-05-19T20:34:07.2131317Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-19T20:34:07.2132903Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-19T20:34:07.2136230Z libssh2-1-dev 2021-05-19T20:34:07.2311815Z 0 upgraded, 11 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:07.2312537Z Need to get 2667 kB of archives. 2021-05-19T20:34:07.2313225Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-19T20:34:07.2315067Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-19T20:34:07.2349163Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-19T20:34:07.2410535Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-19T20:34:07.2415283Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-19T20:34:07.2428454Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-19T20:34:07.2433743Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-19T20:34:07.2448102Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-19T20:34:07.2509705Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-19T20:34:07.2574031Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-19T20:34:07.2610962Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-19T20:34:07.2617568Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-19T20:34:07.6698232Z Fetched 2667 kB in 0s (52.7 MB/s) 2021-05-19T20:34:07.6994344Z Selecting previously unselected package libgpg-error-dev. 2021-05-19T20:34:07.7068053Z (Reading database ... 2021-05-19T20:34:07.7068840Z (Reading database ... 5% 2021-05-19T20:34:07.7069529Z (Reading database 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2021-05-19T20:34:07.8174393Z (Reading database ... 242044 files and directories currently installed.) 2021-05-19T20:34:07.8273262Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-19T20:34:07.8303871Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-19T20:34:07.8657700Z Selecting previously unselected package libgcrypt20-dev. 2021-05-19T20:34:07.8874995Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-19T20:34:07.8889777Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-19T20:34:07.9618067Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-19T20:34:07.9794981Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-19T20:34:07.9814589Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-19T20:34:08.0137629Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-19T20:34:08.0304874Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:08.0324698Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.0737472Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-19T20:34:08.0934716Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:08.0948526Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.1257271Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-19T20:34:08.1449676Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:08.1459447Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.1818237Z Selecting previously unselected package libgit2-28:amd64. 2021-05-19T20:34:08.1992105Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-19T20:34:08.2002911Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:08.2618950Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-19T20:34:08.2806274Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-19T20:34:08.2815222Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.3498165Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-19T20:34:08.3703969Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-19T20:34:08.3722296Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-19T20:34:08.4258274Z Selecting previously unselected package libhttp-parser-dev. 2021-05-19T20:34:08.4460550Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-19T20:34:08.4473444Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-19T20:34:08.4720065Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-19T20:34:08.4961375Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-19T20:34:08.4971012Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:08.6160036Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-19T20:34:08.6189898Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.6212398Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-19T20:34:08.6234153Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-19T20:34:08.6254620Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.6277044Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.6301988Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-19T20:34:08.6323244Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-19T20:34:08.6344405Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-19T20:34:08.6366568Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:08.6389186Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-19T20:34:08.6417969Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:13.2664631Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:34:13.3767480Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:15.1606387Z Reading package lists... 2021-05-19T20:34:15.3252300Z Building dependency tree... 2021-05-19T20:34:15.3271880Z Reading state information... 2021-05-19T20:34:15.5716230Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-19T20:34:15.5717910Z libtiff-dev set to manually installed. 2021-05-19T20:34:15.5726816Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:15.6316624Z Reading package lists... 2021-05-19T20:34:15.7957248Z Building dependency tree... 2021-05-19T20:34:15.7975981Z Reading state information... 2021-05-19T20:34:16.0236794Z unixodbc-dev is already the newest version (2.3.7). 2021-05-19T20:34:16.0238086Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:16.0839732Z Reading package lists... 2021-05-19T20:34:16.2550206Z Building dependency tree... 2021-05-19T20:34:16.2568736Z Reading state information... 2021-05-19T20:34:16.4603681Z The following NEW packages will be installed: 2021-05-19T20:34:16.4606483Z libsodium-dev 2021-05-19T20:34:16.4797021Z 0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:16.4798047Z Need to get 169 kB of archives. 2021-05-19T20:34:16.4799749Z After this operation, 826 kB of additional disk space will be used. 2021-05-19T20:34:16.4801565Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-19T20:34:16.8765153Z Fetched 169 kB in 0s (9265 kB/s) 2021-05-19T20:34:16.9050866Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-19T20:34:16.9125107Z (Reading database ... 2021-05-19T20:34:16.9125836Z (Reading database ... 5% 2021-05-19T20:34:16.9126499Z (Reading database ... 10% 2021-05-19T20:34:16.9127140Z (Reading database ... 15% 2021-05-19T20:34:16.9127760Z (Reading database ... 20% 2021-05-19T20:34:16.9128392Z (Reading database ... 25% 2021-05-19T20:34:16.9129025Z (Reading database ... 30% 2021-05-19T20:34:16.9129636Z (Reading database ... 35% 2021-05-19T20:34:16.9130266Z (Reading database ... 40% 2021-05-19T20:34:16.9131077Z (Reading database ... 45% 2021-05-19T20:34:16.9131690Z (Reading database ... 50% 2021-05-19T20:34:16.9226813Z (Reading database ... 55% 2021-05-19T20:34:16.9265861Z (Reading database ... 60% 2021-05-19T20:34:16.9330972Z (Reading database ... 65% 2021-05-19T20:34:16.9355318Z (Reading database ... 70% 2021-05-19T20:34:16.9384977Z (Reading database ... 75% 2021-05-19T20:34:16.9688027Z (Reading database ... 80% 2021-05-19T20:34:16.9716173Z (Reading database ... 85% 2021-05-19T20:34:16.9821213Z (Reading database ... 90% 2021-05-19T20:34:17.0204817Z (Reading database ... 95% 2021-05-19T20:34:17.0205395Z (Reading database ... 100% 2021-05-19T20:34:17.0206198Z (Reading database ... 242547 files and directories currently installed.) 2021-05-19T20:34:17.0308018Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-19T20:34:17.0325442Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-19T20:34:17.1069608Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-19T20:34:18.8805696Z Reading package lists... 2021-05-19T20:34:19.0576880Z Building dependency tree... 2021-05-19T20:34:19.0595810Z Reading state information... 2021-05-19T20:34:19.2111268Z The following additional packages will be installed: 2021-05-19T20:34:19.2114527Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-19T20:34:19.2616565Z The following NEW packages will be installed: 2021-05-19T20:34:20.2414637Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-19T20:34:20.2423445Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-19T20:34:20.2424593Z 0 upgraded, 8 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:20.2425407Z Need to get 10.4 MB of archives. 2021-05-19T20:34:20.2426273Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-19T20:34:20.2427959Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-19T20:34:20.2429824Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-19T20:34:20.2431709Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-19T20:34:20.2433653Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-19T20:34:20.2435638Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-19T20:34:20.2437690Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-19T20:34:20.2439678Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-19T20:34:20.2441399Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-19T20:34:20.2442364Z Fetched 10.4 MB in 0s (24.5 MB/s) 2021-05-19T20:34:20.2443321Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-19T20:34:20.2444038Z (Reading database ... 2021-05-19T20:34:20.2444583Z (Reading database ... 5% 2021-05-19T20:34:20.2445122Z (Reading database ... 10% 2021-05-19T20:34:20.2445646Z (Reading database ... 15% 2021-05-19T20:34:20.2446182Z (Reading database ... 20% 2021-05-19T20:34:20.2446740Z (Reading database ... 25% 2021-05-19T20:34:20.2447256Z (Reading database ... 30% 2021-05-19T20:34:20.2447790Z (Reading database ... 35% 2021-05-19T20:34:20.2448325Z (Reading database ... 40% 2021-05-19T20:34:20.2448847Z (Reading database ... 45% 2021-05-19T20:34:20.2449381Z (Reading database ... 50% 2021-05-19T20:34:20.2449918Z (Reading database ... 55% 2021-05-19T20:34:20.2450437Z (Reading database ... 60% 2021-05-19T20:34:20.2450973Z (Reading database ... 65% 2021-05-19T20:34:20.2451511Z (Reading database ... 70% 2021-05-19T20:34:20.2452035Z (Reading database ... 75% 2021-05-19T20:34:20.2452569Z (Reading database ... 80% 2021-05-19T20:34:20.2453393Z (Reading database ... 85% 2021-05-19T20:34:20.2453935Z (Reading database ... 90% 2021-05-19T20:34:20.2454476Z (Reading database ... 95% 2021-05-19T20:34:20.2455000Z (Reading database ... 100% 2021-05-19T20:34:20.2456980Z (Reading database ... 242617 files and directories currently installed.) 2021-05-19T20:34:20.2522327Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ... 2021-05-19T20:34:20.2531039Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-19T20:34:20.3190593Z Selecting previously unselected package liblept5:amd64. 2021-05-19T20:34:20.3431833Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-19T20:34:20.3451286Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-19T20:34:20.4511204Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-19T20:34:20.4747851Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-19T20:34:20.4756987Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-19T20:34:20.6176813Z Selecting previously unselected package libtesseract4:amd64. 2021-05-19T20:34:20.6358869Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:20.6371182Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:20.7658663Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-19T20:34:20.7895550Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:20.7910859Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:20.9533120Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-19T20:34:20.9741660Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-19T20:34:20.9751112Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:21.1377544Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-19T20:34:21.1551761Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-19T20:34:21.1563556Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:21.5058298Z Selecting previously unselected package tesseract-ocr. 2021-05-19T20:34:21.5241965Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-19T20:34:21.5253883Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-19T20:34:21.6058340Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:21.6103647Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-19T20:34:21.6126609Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-19T20:34:21.6148747Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:21.6185489Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-19T20:34:21.6212079Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-19T20:34:21.6237036Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-19T20:34:21.6259826Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-19T20:34:21.6296709Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:24.4381149Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:26.2019659Z Reading package lists... 2021-05-19T20:34:26.3707569Z Building dependency tree... 2021-05-19T20:34:26.3726148Z Reading state information... 2021-05-19T20:34:26.6019257Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-19T20:34:26.6020585Z 0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:26.6623108Z Reading package lists... 2021-05-19T20:34:26.8266234Z Building dependency tree... 2021-05-19T20:34:26.8285180Z Reading state information... 2021-05-19T20:34:26.9785367Z The following additional packages will be installed: 2021-05-19T20:34:26.9790023Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-19T20:34:26.9791209Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-19T20:34:26.9796049Z Suggested packages: 2021-05-19T20:34:26.9796929Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-19T20:34:27.0321860Z The following NEW packages will be installed: 2021-05-19T20:34:27.0325113Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-19T20:34:27.0331317Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-19T20:34:27.0526665Z 0 upgraded, 10 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:27.0527660Z Need to get 1459 kB of archives. 2021-05-19T20:34:27.0528353Z After this operation, 7754 kB of additional disk space will be used. 2021-05-19T20:34:27.0530146Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-19T20:34:27.0558464Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-19T20:34:27.0565255Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-19T20:34:27.0572991Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-19T20:34:27.0580006Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-19T20:34:27.0585448Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-19T20:34:27.0624861Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-19T20:34:27.0790514Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-19T20:34:27.0860133Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-19T20:34:27.0866864Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-19T20:34:27.5062467Z Fetched 1459 kB in 0s (21.5 MB/s) 2021-05-19T20:34:27.5368984Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-19T20:34:27.5446582Z (Reading database ... 2021-05-19T20:34:27.5447251Z (Reading database ... 5% 2021-05-19T20:34:27.5447812Z (Reading database ... 10% 2021-05-19T20:34:27.5448344Z (Reading database ... 15% 2021-05-19T20:34:27.5448885Z (Reading database ... 20% 2021-05-19T20:34:27.5449424Z (Reading database ... 25% 2021-05-19T20:34:27.5449980Z (Reading database ... 30% 2021-05-19T20:34:27.5450511Z (Reading database ... 35% 2021-05-19T20:34:27.5451042Z (Reading database ... 40% 2021-05-19T20:34:27.5451563Z (Reading database ... 45% 2021-05-19T20:34:27.5452095Z (Reading database ... 50% 2021-05-19T20:34:27.5547241Z (Reading database ... 55% 2021-05-19T20:34:27.5596589Z (Reading database ... 60% 2021-05-19T20:34:27.5635982Z (Reading database ... 65% 2021-05-19T20:34:27.5691102Z (Reading database ... 70% 2021-05-19T20:34:27.5720770Z (Reading database ... 75% 2021-05-19T20:34:27.6017614Z (Reading database ... 80% 2021-05-19T20:34:27.6047852Z (Reading database ... 85% 2021-05-19T20:34:27.6152998Z (Reading database ... 90% 2021-05-19T20:34:27.6535568Z (Reading database ... 95% 2021-05-19T20:34:27.6536442Z (Reading database ... 100% 2021-05-19T20:34:27.6537338Z (Reading database ... 242842 files and directories currently installed.) 2021-05-19T20:34:27.6641824Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:27.6668132Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:27.7017504Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-19T20:34:27.7195968Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:27.7206858Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:27.7538168Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-19T20:34:27.7741108Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:27.7757765Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:27.8097106Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-19T20:34:27.8282438Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:27.8290729Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:27.8617366Z Selecting previously unselected package comerr-dev:amd64. 2021-05-19T20:34:27.8818129Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-19T20:34:27.8850173Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-19T20:34:27.9137926Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-19T20:34:27.9357318Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:27.9365738Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:27.9777739Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-19T20:34:27.9962623Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-19T20:34:27.9974958Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-19T20:34:28.0698791Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-19T20:34:28.0895111Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-19T20:34:28.0902785Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-19T20:34:28.1378363Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-19T20:34:28.1565070Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-19T20:34:28.1571789Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.1818235Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-19T20:34:28.2059611Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-19T20:34:28.2074004Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-19T20:34:28.3092037Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-19T20:34:28.3122562Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3148916Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-19T20:34:28.3176332Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-19T20:34:28.3217847Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3247781Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3271869Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3294442Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3316094Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-19T20:34:28.3335859Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-19T20:34:28.3364995Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:28.3556221Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:31.3960238Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-19T20:34:33.2558846Z Reading package lists... 2021-05-19T20:34:33.4239179Z Building dependency tree... 2021-05-19T20:34:33.4257421Z Reading state information... 2021-05-19T20:34:33.5736543Z E: Unable to locate package udunits 2021-05-19T20:34:33.6353954Z Reading package lists... 2021-05-19T20:34:33.8033793Z Building dependency tree... 2021-05-19T20:34:33.8053171Z Reading state information... 2021-05-19T20:34:33.9551874Z The following additional packages will be installed: 2021-05-19T20:34:33.9553301Z libwebpdemux2 2021-05-19T20:34:34.0047797Z The following NEW packages will be installed: 2021-05-19T20:34:34.0053992Z libwebp-dev libwebpdemux2 2021-05-19T20:34:34.0243082Z 0 upgraded, 2 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:34.0243776Z Need to get 277 kB of archives. 2021-05-19T20:34:34.0244517Z After this operation, 965 kB of additional disk space will be used. 2021-05-19T20:34:34.0246218Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-19T20:34:34.0260434Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-19T20:34:34.4303430Z Fetched 277 kB in 0s (12.7 MB/s) 2021-05-19T20:34:34.4627764Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-19T20:34:34.4712147Z (Reading database ... 2021-05-19T20:34:34.4712711Z (Reading database ... 5% 2021-05-19T20:34:34.4713174Z (Reading 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... 100% 2021-05-19T20:34:34.5855378Z (Reading database ... 243142 files and directories currently installed.) 2021-05-19T20:34:34.5960572Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-19T20:34:34.5978898Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-19T20:34:34.6298207Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-19T20:34:34.6464516Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-19T20:34:34.6478837Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-19T20:34:34.7259792Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-19T20:34:34.7287147Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-19T20:34:34.7320532Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:36.5564847Z Reading package lists... 2021-05-19T20:34:36.7235650Z Building dependency tree... 2021-05-19T20:34:36.7256337Z Reading state information... 2021-05-19T20:34:36.8760160Z The following additional packages will be installed: 2021-05-19T20:34:36.8763379Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-19T20:34:36.8765182Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-19T20:34:36.8766674Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-19T20:34:36.8773083Z Suggested packages: 2021-05-19T20:34:36.8774573Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-19T20:34:36.8775211Z Recommended packages: 2021-05-19T20:34:36.8775728Z cargo 2021-05-19T20:34:36.9324594Z The following NEW packages will be installed: 2021-05-19T20:34:36.9332040Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-19T20:34:36.9333555Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-19T20:34:36.9337896Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-19T20:34:36.9568767Z 0 upgraded, 13 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:36.9569768Z Need to get 108 MB of archives. 2021-05-19T20:34:36.9570878Z After this operation, 501 MB of additional disk space will be used. 2021-05-19T20:34:36.9572676Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-19T20:34:36.9611820Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-19T20:34:36.9621807Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-19T20:34:36.9631492Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-19T20:34:36.9710554Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-19T20:34:36.9750227Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-19T20:34:37.0064553Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-19T20:34:37.1226088Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-19T20:34:38.9940703Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-19T20:34:39.9952238Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-19T20:34:40.0141352Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-19T20:34:40.1445754Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-19T20:34:40.3261896Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-19T20:34:40.7401106Z Fetched 108 MB in 3s (31.9 MB/s) 2021-05-19T20:34:40.7699904Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-19T20:34:40.7777289Z (Reading database ... 2021-05-19T20:34:40.7778140Z (Reading database ... 5% 2021-05-19T20:34:40.7778778Z (Reading database ... 10% 2021-05-19T20:34:40.7779414Z (Reading database ... 15% 2021-05-19T20:34:40.7780043Z (Reading database ... 20% 2021-05-19T20:34:40.7780653Z (Reading database ... 25% 2021-05-19T20:34:40.7781272Z (Reading database ... 30% 2021-05-19T20:34:40.7781896Z (Reading database ... 35% 2021-05-19T20:34:40.7782505Z (Reading database ... 40% 2021-05-19T20:34:40.7783123Z (Reading database ... 45% 2021-05-19T20:34:40.7783744Z (Reading database ... 50% 2021-05-19T20:34:40.7865883Z (Reading database ... 55% 2021-05-19T20:34:40.7911840Z (Reading database ... 60% 2021-05-19T20:34:40.7950551Z (Reading database ... 65% 2021-05-19T20:34:40.8003383Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-19T20:34:41.0025418Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-19T20:34:41.0407488Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-19T20:34:41.0652484Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-19T20:34:41.0663050Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-19T20:34:41.1319370Z Selecting previously unselected package libsource-highlight4v5. 2021-05-19T20:34:41.1567391Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-19T20:34:41.1580189Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-19T20:34:41.2056852Z Selecting previously unselected package libxxhash0:amd64. 2021-05-19T20:34:41.2259357Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-19T20:34:41.2267939Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-19T20:34:41.2537005Z Selecting previously unselected package gdb. 2021-05-19T20:34:41.2729749Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-19T20:34:41.2743294Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-19T20:34:41.5690229Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-19T20:34:41.5931869Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:34:41.5938649Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:47.6577612Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-19T20:34:47.6776026Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:34:47.6789599Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:50.6195510Z Selecting previously unselected package rustc. 2021-05-19T20:34:50.6443305Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:34:50.6451000Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:50.8164016Z Selecting previously unselected package cargo. 2021-05-19T20:34:50.8409574Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-19T20:34:50.8418071Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-19T20:34:51.1657509Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-19T20:34:51.1851698Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-19T20:34:51.1860205Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-19T20:34:52.2620005Z Selecting previously unselected package rust-gdb. 2021-05-19T20:34:52.2870350Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-19T20:34:52.2879425Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3440365Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3461289Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-19T20:34:52.3479472Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-19T20:34:52.3497209Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3515757Z Setting up libipt2 (2.0.1-1) ... 2021-05-19T20:34:52.3534217Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-19T20:34:52.3553918Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-19T20:34:52.3573008Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3592258Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-19T20:34:52.3612482Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-19T20:34:52.3631477Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3647419Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-19T20:34:52.3671605Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-19T20:34:52.3697761Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:34:52.3897831Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:34:55.2556861Z Reading package lists... 2021-05-19T20:34:55.4178475Z Building dependency tree... 2021-05-19T20:34:55.4197627Z Reading state information... 2021-05-19T20:34:55.5802462Z The following additional packages will be installed: 2021-05-19T20:34:55.5804793Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-19T20:34:55.5806429Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-19T20:34:55.5808011Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-19T20:34:55.5809535Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-19T20:34:55.5811089Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-19T20:34:55.5812609Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-19T20:34:55.5814008Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-19T20:34:55.5816295Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-19T20:34:55.5817916Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-19T20:34:55.5819612Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-19T20:34:55.5821193Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-19T20:34:55.5822771Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-19T20:34:55.5824419Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-19T20:34:55.5826202Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-19T20:34:55.5827989Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-19T20:34:55.5829640Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-19T20:34:55.5831224Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-19T20:34:55.5836365Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-19T20:34:55.5837870Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-19T20:34:55.5839077Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-19T20:34:55.5840251Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-19T20:34:55.5841497Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-19T20:34:55.5842665Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-19T20:34:55.5843791Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-19T20:34:55.5844920Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-19T20:34:55.5846290Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-19T20:34:55.5847670Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-19T20:34:55.5849073Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-19T20:34:55.5850508Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-19T20:34:55.5851843Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-19T20:34:55.5853095Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-19T20:34:55.5854330Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-19T20:34:55.5855798Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-19T20:34:55.5857178Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-19T20:34:55.5858661Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-19T20:34:55.5860132Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-19T20:34:55.5861514Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-19T20:34:55.5862866Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-19T20:34:55.5864167Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-19T20:34:55.5865579Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-19T20:34:55.5867009Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-19T20:34:55.5868304Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-19T20:34:55.5869629Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-19T20:34:55.5871188Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-19T20:34:55.5872785Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-19T20:34:55.5874187Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-19T20:34:55.5875534Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-19T20:34:55.5877009Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-19T20:34:55.5878481Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-19T20:34:55.5879201Z Suggested packages: 2021-05-19T20:34:55.5880290Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-19T20:34:55.5881578Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-19T20:34:55.5883024Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-19T20:34:55.5884482Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-19T20:34:55.5885716Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-19T20:34:55.5887028Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-19T20:34:55.5888437Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-19T20:34:55.5889838Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-19T20:34:55.5891167Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-19T20:34:55.5892532Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-19T20:34:55.5893996Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-19T20:34:55.5895633Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-19T20:34:55.5897048Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-19T20:34:55.5898099Z wpagui libengine-pkcs11-openssl 2021-05-19T20:34:56.2497724Z The following NEW packages will be installed: 2021-05-19T20:34:56.2500015Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-19T20:34:56.2505409Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-19T20:34:56.2506955Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-19T20:34:56.2508384Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-19T20:34:56.2509862Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-19T20:34:56.2511391Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-19T20:34:56.2512609Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-19T20:34:56.2514080Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-19T20:34:56.2515536Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-19T20:34:56.2516954Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-19T20:34:56.2518414Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-19T20:34:56.2519892Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-19T20:34:56.2521425Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-19T20:34:56.2523086Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-19T20:34:56.2524671Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-19T20:34:56.2526143Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-19T20:34:56.2527698Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-19T20:34:56.2529089Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-19T20:34:56.2530535Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-19T20:34:56.2532208Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-19T20:34:56.2534224Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-19T20:34:56.2535313Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-19T20:34:56.2536456Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-19T20:34:56.2537426Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-19T20:34:56.2538415Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-19T20:34:56.2539915Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-19T20:34:56.2541119Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-19T20:34:56.2542351Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-19T20:34:56.2543691Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-19T20:34:56.2544867Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-19T20:34:56.2545965Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-19T20:34:56.2547025Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-19T20:34:56.2548190Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-19T20:34:56.2549387Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-19T20:34:56.2550646Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-19T20:34:56.2551944Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-19T20:34:56.2553140Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-19T20:34:56.2554294Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-19T20:34:56.2555431Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-19T20:34:56.2556634Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-19T20:34:56.2557868Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-19T20:34:56.2559082Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-19T20:34:56.2560314Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-19T20:34:56.2561785Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-19T20:34:56.2563264Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-19T20:34:56.2564515Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-19T20:34:56.2565746Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-19T20:34:56.2567035Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-19T20:34:56.2568118Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-19T20:34:56.2568948Z 0 upgraded, 214 newly installed, 0 to remove and 17 not upgraded. 2021-05-19T20:34:56.2569542Z Need to get 183 MB of archives. 2021-05-19T20:34:56.2570209Z After this operation, 776 MB of additional disk space will be used. 2021-05-19T20:34:56.2571632Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-19T20:34:56.2573323Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-19T20:34:56.2575013Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-19T20:34:56.2576907Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-19T20:34:56.2578554Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-19T20:34:56.2580070Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-19T20:34:56.2581616Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-19T20:34:56.2583198Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-19T20:34:56.2584818Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-19T20:34:56.2586469Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-19T20:34:56.2588077Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-19T20:34:56.2589844Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-19T20:34:56.2591460Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-19T20:34:56.2592959Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-19T20:34:56.2594482Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-19T20:34:56.2596018Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-19T20:34:56.2597499Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-19T20:34:56.2599054Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-19T20:34:56.2600617Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-19T20:34:56.2602093Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-19T20:34:56.2603544Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-19T20:34:56.2605043Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-19T20:34:56.2606615Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-19T20:34:56.2608250Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-19T20:34:56.2609837Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-19T20:34:56.2611298Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-19T20:34:56.2613089Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4ubuntu0.1 [735 kB] 2021-05-19T20:34:56.2614788Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-19T20:34:56.2617282Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-19T20:34:56.2619013Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-19T20:34:56.2620642Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-19T20:34:56.2622187Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-19T20:34:56.2623790Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-19T20:34:56.2625422Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-19T20:34:56.2626947Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-19T20:34:56.2628501Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-19T20:34:56.2630241Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-19T20:34:56.2632034Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-19T20:34:56.2633659Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-19T20:34:56.2644464Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-19T20:34:56.2775722Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-19T20:34:56.2805892Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-19T20:34:56.2835825Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-19T20:34:56.2853555Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-19T20:34:56.2863241Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-19T20:34:56.2877965Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-19T20:34:56.2887208Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-19T20:34:56.2924601Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-19T20:34:56.2931551Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-19T20:34:56.2967636Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-19T20:34:56.2976210Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-19T20:34:56.2982387Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-19T20:34:56.2989246Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-19T20:34:56.3000729Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-19T20:34:56.3043121Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-19T20:34:56.3051098Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-19T20:34:56.4105041Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-19T20:34:56.4173530Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-19T20:34:56.4181417Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-19T20:34:56.4207998Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-19T20:34:56.4210377Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-19T20:34:56.4215750Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-19T20:34:56.4222352Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-19T20:34:56.4235916Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-19T20:34:56.4243901Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-19T20:34:56.4269643Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-19T20:34:56.4287288Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-19T20:34:56.4300660Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-19T20:34:56.4394780Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-19T20:34:56.4459428Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-19T20:34:56.4904684Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-19T20:34:56.4909095Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-19T20:34:56.4917157Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-19T20:34:56.4918975Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-19T20:34:56.4978587Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-19T20:34:56.5100863Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-19T20:34:56.6611470Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-19T20:34:56.9089722Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-19T20:34:56.9122080Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-19T20:34:56.9132941Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-19T20:34:56.9354516Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-19T20:34:56.9363180Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-19T20:34:56.9439375Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-19T20:34:57.1737733Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-19T20:34:57.9779850Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-19T20:34:58.0410777Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-19T20:34:58.0427061Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-19T20:34:58.0431187Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-19T20:34:58.0444326Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-19T20:34:58.0489498Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-19T20:34:58.0493734Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-19T20:34:58.0509193Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-19T20:34:58.0517954Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-19T20:34:58.0535021Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-19T20:34:58.0548493Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-19T20:34:58.0556280Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-19T20:34:58.0773958Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-19T20:34:58.0814301Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-19T20:34:58.0835176Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-19T20:34:58.0839239Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-19T20:34:58.0855635Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-19T20:34:58.0936502Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-19T20:34:58.1126340Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-19T20:34:58.1234428Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-19T20:34:58.1323786Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-19T20:34:58.1550299Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-19T20:34:58.1806701Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-19T20:34:59.0523314Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-19T20:34:59.0605345Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-19T20:34:59.0695759Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-19T20:34:59.1301529Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-19T20:34:59.3395809Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-19T20:34:59.3403647Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-19T20:34:59.3414814Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4ubuntu0.1 [620 kB] 2021-05-19T20:34:59.3479525Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-19T20:34:59.3487243Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-19T20:34:59.3704581Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-19T20:34:59.3782284Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-19T20:34:59.3798911Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-19T20:34:59.3805406Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-19T20:34:59.3811589Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-19T20:34:59.3832382Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-19T20:34:59.3842907Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-19T20:34:59.3848416Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-19T20:34:59.3853747Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-19T20:34:59.3870615Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-19T20:34:59.3877465Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-19T20:34:59.3881848Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-19T20:34:59.3914588Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-19T20:34:59.3984777Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-19T20:34:59.4076072Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-19T20:34:59.4180185Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-19T20:34:59.4265004Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-19T20:34:59.4528772Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-19T20:34:59.4623328Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-19T20:34:59.4666907Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-19T20:34:59.4782303Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-19T20:34:59.5076855Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-19T20:34:59.5212208Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-19T20:34:59.5354000Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-19T20:34:59.5422623Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-19T20:34:59.5542619Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-19T20:34:59.5611999Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-19T20:34:59.5694296Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-19T20:34:59.5795794Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-19T20:34:59.5909461Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-19T20:34:59.5982070Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-19T20:34:59.6126024Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-19T20:34:59.6590883Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-19T20:34:59.8866936Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-19T20:34:59.8926547Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-19T20:34:59.9118516Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-19T20:34:59.9187584Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-19T20:34:59.9283129Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-19T20:34:59.9465816Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-19T20:34:59.9499563Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-19T20:35:00.0002399Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-19T20:35:00.0507713Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-19T20:35:00.0911280Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-19T20:35:00.1924447Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-19T20:35:00.2077580Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-19T20:35:00.2230070Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-19T20:35:00.2262113Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-19T20:35:00.2303458Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-19T20:35:00.2307292Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-19T20:35:00.2324705Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-19T20:35:00.2329347Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-19T20:35:00.2388221Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-19T20:35:00.2417734Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-19T20:35:00.2695899Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-19T20:35:00.2698948Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-19T20:35:00.2709960Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-19T20:35:00.2713580Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-19T20:35:00.2721865Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-19T20:35:00.2725470Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-19T20:35:00.2837099Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-19T20:35:00.2842232Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-19T20:35:00.2956342Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-19T20:35:00.3034163Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-19T20:35:00.3124413Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-19T20:35:00.3158080Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-19T20:35:00.3165232Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-19T20:35:00.3296713Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-19T20:35:00.3305649Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-19T20:35:00.3965446Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-19T20:35:00.3992905Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-19T20:35:00.4042543Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-19T20:35:00.4200910Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-19T20:35:00.4246033Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-19T20:35:00.4328473Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.4 [363 kB] 2021-05-19T20:35:00.4436872Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-19T20:35:00.4486444Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-19T20:35:00.5210563Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-19T20:35:00.5270874Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-19T20:35:00.5280657Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-19T20:35:00.5462315Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-19T20:35:00.5526677Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-19T20:35:00.5572819Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-19T20:35:00.5649884Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-19T20:35:00.5921737Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-19T20:35:00.6695629Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-19T20:35:00.9592331Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-19T20:35:00.9680930Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-19T20:35:01.0064258Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-19T20:35:02.9140689Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-19T20:35:03.1070114Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-19T20:35:03.1348616Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-19T20:35:03.1460300Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-19T20:35:03.1727509Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-19T20:35:03.1813011Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-19T20:35:03.2222961Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-19T20:35:03.2506299Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-19T20:35:03.2566790Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-19T20:35:03.2576176Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-19T20:35:04.2933302Z Fetched 183 MB in 8s (24.1 MB/s) 2021-05-19T20:35:04.3253117Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-19T20:35:04.3332193Z (Reading database ... 2021-05-19T20:35:04.3332925Z (Reading database ... 5% 2021-05-19T20:35:04.3333613Z (Reading database ... 10% 2021-05-19T20:35:04.3334257Z (Reading database ... 15% 2021-05-19T20:35:04.3334903Z (Reading database ... 20% 2021-05-19T20:35:04.3337915Z (Reading database ... 25% 2021-05-19T20:35:04.3338408Z (Reading database ... 30% 2021-05-19T20:35:04.3338866Z (Reading database ... 35% 2021-05-19T20:35:04.3339307Z (Reading database ... 40% 2021-05-19T20:35:04.3339762Z (Reading database ... 45% 2021-05-19T20:35:04.3340235Z (Reading database ... 50% 2021-05-19T20:35:04.3421436Z (Reading database ... 55% 2021-05-19T20:35:04.3471718Z (Reading database ... 60% 2021-05-19T20:35:04.3517357Z (Reading database ... 65% 2021-05-19T20:35:04.3575355Z (Reading database ... 70% 2021-05-19T20:35:04.3605561Z (Reading database ... 75% 2021-05-19T20:35:04.3920909Z (Reading database ... 80% 2021-05-19T20:35:04.3952446Z (Reading database ... 85% 2021-05-19T20:35:04.4065374Z (Reading database ... 90% 2021-05-19T20:35:04.4464035Z (Reading database ... 95% 2021-05-19T20:35:04.4464663Z (Reading database ... 100% 2021-05-19T20:35:04.4465473Z (Reading database ... 243925 files and directories currently installed.) 2021-05-19T20:35:04.4571675Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-19T20:35:04.4587050Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-19T20:35:04.4937460Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-19T20:35:04.5146566Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:04.5219910Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:04.6979233Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-19T20:35:04.7212292Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:35:04.7214325Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-19T20:35:04.7617686Z Selecting previously unselected package libegl1:amd64. 2021-05-19T20:35:04.7784556Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-19T20:35:04.7795416Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-19T20:35:04.8096867Z Selecting previously unselected package libevdev2:amd64. 2021-05-19T20:35:04.8278409Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-05-19T20:35:04.8287604Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-19T20:35:04.8521880Z Selecting previously unselected package libmtdev1:amd64. 2021-05-19T20:35:04.8769085Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-05-19T20:35:04.8776489Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-05-19T20:35:04.9057153Z Selecting previously unselected package libwacom-common. 2021-05-19T20:35:04.9248839Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-05-19T20:35:04.9259370Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-05-19T20:35:04.9816876Z Selecting previously unselected package libwacom2:amd64. 2021-05-19T20:35:05.0001058Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-05-19T20:35:05.0013916Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-19T20:35:05.0258206Z Selecting previously unselected package libinput-bin. 2021-05-19T20:35:05.0482743Z Preparing to unpack .../008-libinput-bin_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-19T20:35:05.0490799Z Unpacking libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:05.0816734Z Selecting previously unselected package libinput10:amd64. 2021-05-19T20:35:05.1002228Z Preparing to unpack .../009-libinput10_1.15.5-1ubuntu0.2_amd64.deb ... 2021-05-19T20:35:05.1014364Z Unpacking libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:05.1358123Z Selecting previously unselected package libqt5dbus5:amd64. 2021-05-19T20:35:05.1567647Z Preparing to unpack .../010-libqt5dbus5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:05.1578430Z Unpacking libqt5dbus5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:05.2057498Z Selecting previously unselected package libqt5network5:amd64. 2021-05-19T20:35:05.2243728Z Preparing to unpack .../011-libqt5network5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:05.2251125Z Unpacking libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:05.3137733Z Selecting previously unselected package libxcb-icccm4:amd64. 2021-05-19T20:35:05.3325249Z Preparing to unpack .../012-libxcb-icccm4_0.4.1-1.1_amd64.deb ... 2021-05-19T20:35:05.3338357Z Unpacking libxcb-icccm4:amd64 (0.4.1-1.1) ... 2021-05-19T20:35:05.3617680Z Selecting previously unselected package libxcb-util1:amd64. 2021-05-19T20:35:05.3810585Z Preparing to unpack .../013-libxcb-util1_0.4.0-0ubuntu3_amd64.deb ... 2021-05-19T20:35:05.3821848Z Unpacking libxcb-util1:amd64 (0.4.0-0ubuntu3) ... 2021-05-19T20:35:05.4097246Z Selecting previously unselected package libxcb-image0:amd64. 2021-05-19T20:35:05.4302389Z Preparing to unpack .../014-libxcb-image0_0.4.0-1build1_amd64.deb ... 2021-05-19T20:35:05.4311839Z Unpacking libxcb-image0:amd64 (0.4.0-1build1) ... 2021-05-19T20:35:05.4537379Z Selecting previously unselected package libxcb-keysyms1:amd64. 2021-05-19T20:35:05.4787908Z Preparing to unpack .../015-libxcb-keysyms1_0.4.0-1build1_amd64.deb ... 2021-05-19T20:35:05.4793479Z Unpacking libxcb-keysyms1:amd64 (0.4.0-1build1) ... 2021-05-19T20:35:05.5002416Z Selecting previously unselected package libxcb-randr0:amd64. 2021-05-19T20:35:05.5252594Z Preparing to unpack .../016-libxcb-randr0_1.14-2_amd64.deb ... 2021-05-19T20:35:05.5260407Z Unpacking libxcb-randr0:amd64 (1.14-2) ... 2021-05-19T20:35:05.5485862Z Selecting previously unselected package libxcb-render-util0:amd64. 2021-05-19T20:35:05.5731961Z Preparing to unpack .../017-libxcb-render-util0_0.3.9-1build1_amd64.deb ... 2021-05-19T20:35:05.5740054Z Unpacking libxcb-render-util0:amd64 (0.3.9-1build1) ... 2021-05-19T20:35:05.6017284Z Selecting previously unselected package libxcb-xinerama0:amd64. 2021-05-19T20:35:05.6217437Z Preparing to unpack .../018-libxcb-xinerama0_1.14-2_amd64.deb ... 2021-05-19T20:35:05.6227209Z Unpacking libxcb-xinerama0:amd64 (1.14-2) ... 2021-05-19T20:35:05.6497432Z Selecting previously unselected package libxcb-xinput0:amd64. 2021-05-19T20:35:05.6689194Z Preparing to unpack .../019-libxcb-xinput0_1.14-2_amd64.deb ... 2021-05-19T20:35:05.6699992Z Unpacking libxcb-xinput0:amd64 (1.14-2) ... 2021-05-19T20:35:05.6947921Z Selecting previously unselected package libxcb-xkb1:amd64. 2021-05-19T20:35:05.7191238Z Preparing to unpack .../020-libxcb-xkb1_1.14-2_amd64.deb ... 2021-05-19T20:35:05.7201621Z Unpacking libxcb-xkb1:amd64 (1.14-2) ... 2021-05-19T20:35:05.7437630Z Selecting previously unselected package libxkbcommon-x11-0:amd64. 2021-05-19T20:35:05.7682469Z Preparing to unpack .../021-libxkbcommon-x11-0_0.10.0-1_amd64.deb ... 2021-05-19T20:35:05.7691768Z Unpacking libxkbcommon-x11-0:amd64 (0.10.0-1) ... 2021-05-19T20:35:05.8017376Z Selecting previously unselected package libqt5gui5:amd64. 2021-05-19T20:35:05.8223568Z Preparing to unpack .../022-libqt5gui5_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-19T20:35:05.8290358Z 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/usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:38.9694434Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-19T20:35:38.9696098Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:38.9697454Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-19T20:35:39.0106237Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:39.0107544Z if direction is "increasing": 2021-05-19T20:35:39.0109509Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:39.0110450Z elif direction is "decreasing": 2021-05-19T20:35:39.0284933Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:39.0286198Z if direction is "increasing": 2021-05-19T20:35:39.0288105Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:39.0288981Z elif direction is "decreasing": 2021-05-19T20:35:39.9261576Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:39.9263335Z if props["offset_coordinates"] is "data": 2021-05-19T20:35:39.9265198Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-19T20:35:39.9266455Z if props["coordinates"] is not "data": 2021-05-19T20:35:40.6554950Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-19T20:35:41.1980186Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-19T20:35:41.1982770Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-19T20:35:41.1984998Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-19T20:35:42.3460028Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-19T20:35:42.3491306Z First installation detected... 2021-05-19T20:35:42.3492059Z Checking NSS setup... 2021-05-19T20:35:42.3526969Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-19T20:35:42.3557253Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:42.3613827Z Setting up python3-owslib (0.19.1-1) ... 2021-05-19T20:35:42.6218209Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-19T20:35:42.6239939Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-19T20:35:42.6262151Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-19T20:35:42.6281438Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:42.6301403Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-19T20:35:42.6321802Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-19T20:35:42.6339685Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-19T20:35:42.6367213Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-19T20:35:42.6394006Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-19T20:35:42.8232486Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-19T20:35:42.8253980Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-19T20:35:42.8273524Z Setting up grass-core (7.8.2-1build3) ... 2021-05-19T20:35:43.1771516Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:43.1773408Z if value is '': 2021-05-19T20:35:43.2721158Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:43.2723279Z if do_profiling is "True" or do_profiling is "1": 2021-05-19T20:35:43.2724356Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:43.2725285Z if do_profiling is "True" or do_profiling is "1": 2021-05-19T20:35:43.2726417Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-19T20:35:43.2727375Z if driver_string is not None and driver_string is not "": 2021-05-19T20:35:43.3144829Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:43.3145817Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-19T20:35:43.3146861Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-19T20:35:43.3147777Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-19T20:35:43.3764741Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-19T20:35:43.3788786Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.3862270Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-19T20:35:43.3881446Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.3905111Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.4063964Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:43.4088445Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.4113035Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.4136192Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:35:43.4153658Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.4174098Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-19T20:35:43.5028891Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:43.5050361Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.5071645Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:43.5093717Z Setting up modemmanager (1.12.8-1) ... 2021-05-19T20:35:43.6319074Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-19T20:35:43.6321637Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-19T20:35:44.1619591Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1642894Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1666115Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-19T20:35:44.1694740Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1715271Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:44.1744673Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1769027Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-19T20:35:44.1792753Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-19T20:35:44.1813425Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-19T20:35:44.1836299Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1860574Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1884593Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:35:44.1904960Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:44.1922575Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:35:44.1944366Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:35:44.1966045Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.1984897Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-19T20:35:44.2009978Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:35:44.2032519Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:44.2053085Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-19T20:35:44.3621466Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-19T20:35:44.3643516Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:44.3664133Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:35:44.3686650Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:14.8837223Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:14.8857613Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:14.8882792Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:14.8916544Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:14.8945436Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:14.8965646Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:14.8989086Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-19T20:36:14.9009352Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.0426545Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.0450312Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-19T20:36:15.0471138Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.0489875Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-19T20:36:15.0510970Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.2104465Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.2138822Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.2175879Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-19T20:36:15.2307105Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-19T20:36:15.2471012Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-19T20:36:16.2405212Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-19T20:36:16.2574987Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-19T20:36:16.2807159Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-19T20:36:16.2960204Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-19T20:36:16.3702900Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:36:16.3995541Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-19T20:36:16.6455055Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:36:28.1488526Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-19T20:36:28.1662467Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-19T20:36:29.9367182Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-19T20:36:29.9367678Z with: 2021-05-19T20:36:29.9368119Z github_slug: neuroconductor/dcmsort 2021-05-19T20:36:29.9368547Z env: 2021-05-19T20:36:29.9368938Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:36:29.9369376Z TIC_DEPLOY_KEY: 2021-05-19T20:36:29.9370105Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:36:29.9371663Z GITHUB_PAT: *** 2021-05-19T20:36:29.9372400Z COVERALLS_TOKEN: *** 2021-05-19T20:36:29.9372843Z continue-on-error: true 2021-05-19T20:36:29.9373280Z VDIFFR_RUN_TESTS: 2021-05-19T20:36:29.9373727Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:36:29.9374130Z TZ: UTC 2021-05-19T20:36:29.9374489Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:36:29.9374861Z NOT_CRAN: true 2021-05-19T20:36:29.9375212Z ##[endgroup] 2021-05-19T20:36:29.9691026Z repo slug is: neuroconductor/dcmsort 2021-05-19T20:36:29.9794460Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-19T20:36:29.9795017Z env: 2021-05-19T20:36:29.9795427Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:36:29.9795868Z TIC_DEPLOY_KEY: 2021-05-19T20:36:29.9796610Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:36:29.9797824Z GITHUB_PAT: *** 2021-05-19T20:36:29.9798566Z COVERALLS_TOKEN: *** 2021-05-19T20:36:29.9799024Z continue-on-error: true 2021-05-19T20:36:29.9799455Z VDIFFR_RUN_TESTS: 2021-05-19T20:36:29.9799905Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:36:29.9800313Z TZ: UTC 2021-05-19T20:36:29.9800674Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:36:29.9801066Z NOT_CRAN: true 2021-05-19T20:36:29.9801401Z ##[endgroup] 2021-05-19T20:36:30.1746835Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-19T20:36:30.1747371Z with: 2021-05-19T20:36:30.1747723Z repo_name: dcmsort 2021-05-19T20:36:30.1748107Z repo_version: 0.3.0 2021-05-19T20:36:30.1748472Z runner_os: Linux 2021-05-19T20:36:30.1748828Z R_version: 4.1 2021-05-19T20:36:30.1749142Z env: 2021-05-19T20:36:30.1749546Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:36:30.1749966Z TIC_DEPLOY_KEY: 2021-05-19T20:36:30.1750708Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:36:30.1752286Z GITHUB_PAT: *** 2021-05-19T20:36:30.1753033Z COVERALLS_TOKEN: *** 2021-05-19T20:36:30.1753474Z continue-on-error: true 2021-05-19T20:36:30.1754155Z VDIFFR_RUN_TESTS: 2021-05-19T20:36:30.1754601Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:36:30.1755022Z TZ: UTC 2021-05-19T20:36:30.1755443Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:36:30.1772220Z NOT_CRAN: true 2021-05-19T20:36:30.1772734Z ##[endgroup] 2021-05-19T20:36:30.2109599Z Package: dcmsort 2021-05-19T20:36:30.2112179Z Version: 0.3.0 2021-05-19T20:36:30.2112780Z OS: Linux 2021-05-19T20:36:30.2166779Z ##[group]Run install.packages('remotes') 2021-05-19T20:36:30.2167446Z install.packages('remotes') 2021-05-19T20:36:30.2168192Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-19T20:36:30.2169127Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-19T20:36:30.2176360Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:36:30.2176762Z env: 2021-05-19T20:36:30.2177174Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:36:30.2177624Z TIC_DEPLOY_KEY: 2021-05-19T20:36:30.2178384Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:36:30.2179663Z GITHUB_PAT: *** 2021-05-19T20:36:30.2180410Z COVERALLS_TOKEN: *** 2021-05-19T20:36:30.2180875Z continue-on-error: true 2021-05-19T20:36:30.2181312Z VDIFFR_RUN_TESTS: 2021-05-19T20:36:30.2181771Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:36:30.2182210Z TZ: UTC 2021-05-19T20:36:30.2182584Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:36:30.2183086Z NOT_CRAN: true 2021-05-19T20:36:30.2183450Z ##[endgroup] 2021-05-19T20:36:30.3896205Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:36:30.3897318Z (as ‘lib’ is unspecified) 2021-05-19T20:36:45.0184845Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-19T20:36:45.4029884Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-19T20:36:45.4144892Z ================================================== 2021-05-19T20:36:45.4145909Z downloaded 145 KB 2021-05-19T20:36:45.4146438Z 2021-05-19T20:36:45.7003708Z * installing *source* package ‘remotes’ ... 2021-05-19T20:36:45.7043713Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-19T20:36:45.7044938Z ** using staged installation 2021-05-19T20:36:45.7209675Z ** R 2021-05-19T20:36:45.7395273Z ** inst 2021-05-19T20:36:45.7406431Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:36:47.5279175Z ** help 2021-05-19T20:36:47.6158517Z *** installing help indices 2021-05-19T20:36:47.6756219Z ** building package indices 2021-05-19T20:36:47.9098496Z ** installing vignettes 2021-05-19T20:36:47.9163518Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:36:48.0970216Z ** testing if installed package can be loaded from final location 2021-05-19T20:36:48.3104440Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:36:48.3126536Z * DONE (remotes) 2021-05-19T20:36:48.3216938Z 2021-05-19T20:36:48.3218165Z The downloaded source packages are in 2021-05-19T20:36:48.3219869Z ‘/tmp/RtmpyOk7SP/downloaded_packages’ 2021-05-19T20:37:08.3683083Z ##[group]Run actions/cache@v1 2021-05-19T20:37:08.3683484Z with: 2021-05-19T20:37:08.3683890Z path: /home/runner/work/_temp/Library 2021-05-19T20:37:08.3686725Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-d02ce25fa4d1939a17471c21aded103efd9c5a9eab5c29e424d967fdcbcb2313 2021-05-19T20:37:08.3690385Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-19T20:37:08.3691530Z env: 2021-05-19T20:37:08.3691947Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:08.3692385Z TIC_DEPLOY_KEY: 2021-05-19T20:37:08.3693113Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:08.3694776Z GITHUB_PAT: *** 2021-05-19T20:37:08.3695676Z COVERALLS_TOKEN: *** 2021-05-19T20:37:08.3696132Z continue-on-error: true 2021-05-19T20:37:08.3696637Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:08.3697091Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:08.3697550Z TZ: UTC 2021-05-19T20:37:08.3697905Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:08.3698291Z NOT_CRAN: true 2021-05-19T20:37:08.3698627Z ##[endgroup] 2021-05-19T20:37:08.4121999Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-19T20:37:08.4179780Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-19T20:37:08.4180571Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-19T20:37:08.4181530Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-19T20:37:08.4182102Z sudo -s eval "$sysreqs" 2021-05-19T20:37:08.4225724Z shell: /usr/bin/bash -e {0} 2021-05-19T20:37:08.4226087Z env: 2021-05-19T20:37:08.4226504Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:37:08.4226934Z TIC_DEPLOY_KEY: 2021-05-19T20:37:08.4227677Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:37:08.4228958Z GITHUB_PAT: *** 2021-05-19T20:37:08.4229678Z COVERALLS_TOKEN: *** 2021-05-19T20:37:08.4230133Z continue-on-error: true 2021-05-19T20:37:08.4230572Z VDIFFR_RUN_TESTS: 2021-05-19T20:37:08.4231012Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:37:08.4231428Z TZ: UTC 2021-05-19T20:37:08.4231806Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:37:08.4232316Z NOT_CRAN: true 2021-05-19T20:37:08.4232741Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-19T20:37:08.4233187Z ##[endgroup] 2021-05-19T20:37:08.6093962Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:37:09.1433306Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-19T20:37:24.4883624Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-19T20:37:24.4884361Z crayon (NA -> 1.4.1) [CRAN] 2021-05-19T20:37:24.4884994Z R6 (NA -> 2.5.0) [CRAN] 2021-05-19T20:37:24.4885616Z desc (NA -> 1.3.0) [CRAN] 2021-05-19T20:37:24.4886245Z debugme (NA -> 1.1.0) [CRAN] 2021-05-19T20:37:24.4903471Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-19T20:37:24.4915303Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:37:24.4916128Z (as ‘lib’ is unspecified) 2021-05-19T20:37:38.5395511Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-19T20:37:38.9390832Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-19T20:37:38.9442878Z ================================================== 2021-05-19T20:37:38.9443946Z downloaded 60 KB 2021-05-19T20:37:38.9444291Z 2021-05-19T20:37:38.9486270Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-19T20:37:39.3351399Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-19T20:37:39.3353304Z ================================================== 2021-05-19T20:37:39.3353776Z downloaded 34 KB 2021-05-19T20:37:39.3354080Z 2021-05-19T20:37:39.3386967Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-19T20:37:39.6105710Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-19T20:37:39.6161777Z ================================================== 2021-05-19T20:37:39.6162575Z downloaded 62 KB 2021-05-19T20:37:39.6163071Z 2021-05-19T20:37:39.6203088Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-19T20:37:39.8846041Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-19T20:37:39.9016772Z ================================================== 2021-05-19T20:37:39.9017683Z downloaded 285 KB 2021-05-19T20:37:39.9018136Z 2021-05-19T20:37:39.9051531Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-19T20:37:40.3321033Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-19T20:37:40.3586216Z ================================================== 2021-05-19T20:37:40.3587170Z downloaded 973 KB 2021-05-19T20:37:40.3587572Z 2021-05-19T20:37:40.5905806Z * installing *source* package ‘rprojroot’ ... 2021-05-19T20:37:40.5927646Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-19T20:37:40.5928821Z ** using staged installation 2021-05-19T20:37:40.6057658Z ** R 2021-05-19T20:37:40.6100287Z ** inst 2021-05-19T20:37:40.6110525Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:41.0776444Z ** help 2021-05-19T20:37:41.0977654Z *** installing help indices 2021-05-19T20:37:41.1223767Z *** copying figures 2021-05-19T20:37:41.1228656Z ** building package indices 2021-05-19T20:37:41.3176499Z ** installing vignettes 2021-05-19T20:37:41.3225172Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:41.4806887Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:41.6412567Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:41.6422241Z * DONE (rprojroot) 2021-05-19T20:37:41.8753839Z * installing *source* package ‘crayon’ ... 2021-05-19T20:37:41.8771819Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-19T20:37:41.8773007Z ** using staged installation 2021-05-19T20:37:41.8900505Z ** R 2021-05-19T20:37:41.8987688Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:42.6568950Z ** help 2021-05-19T20:37:42.7093752Z *** installing help indices 2021-05-19T20:37:42.7468630Z ** building package indices 2021-05-19T20:37:42.9475981Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:43.1219094Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:43.2917668Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:43.2929102Z * DONE (crayon) 2021-05-19T20:37:43.5179142Z * installing *source* package ‘R6’ ... 2021-05-19T20:37:43.5195112Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-19T20:37:43.5196067Z ** using staged installation 2021-05-19T20:37:43.5320237Z ** R 2021-05-19T20:37:43.5385245Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:43.9728145Z ** help 2021-05-19T20:37:43.9926957Z *** installing help indices 2021-05-19T20:37:44.0118885Z *** copying figures 2021-05-19T20:37:44.0122423Z ** building package indices 2021-05-19T20:37:44.1895763Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:44.3638273Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:44.5407749Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:44.5417209Z * DONE (R6) 2021-05-19T20:37:44.8175339Z * installing *source* package ‘desc’ ... 2021-05-19T20:37:44.8219215Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-19T20:37:44.8220398Z ** using staged installation 2021-05-19T20:37:44.8354014Z ** R 2021-05-19T20:37:44.8464270Z ** inst 2021-05-19T20:37:44.8478403Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:46.3776370Z ** help 2021-05-19T20:37:46.4904445Z *** installing help indices 2021-05-19T20:37:46.5704007Z ** building package indices 2021-05-19T20:37:46.8381641Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:47.0053933Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:47.1958120Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:47.1976441Z * DONE (desc) 2021-05-19T20:37:47.4439368Z * installing *source* package ‘debugme’ ... 2021-05-19T20:37:47.4470833Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-19T20:37:47.4472065Z ** using staged installation 2021-05-19T20:37:47.4574933Z ** R 2021-05-19T20:37:47.4605181Z ** inst 2021-05-19T20:37:47.4624263Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:47.7410703Z ** help 2021-05-19T20:37:47.7540775Z *** installing help indices 2021-05-19T20:37:47.7753518Z ** building package indices 2021-05-19T20:37:47.9470904Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:48.1276842Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:48.2927694Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:48.2934667Z * DONE (debugme) 2021-05-19T20:37:48.2988702Z 2021-05-19T20:37:48.2989618Z The downloaded source packages are in 2021-05-19T20:37:48.2990929Z ‘/tmp/RtmpyeTstA/downloaded_packages’ 2021-05-19T20:37:48.3004145Z Running `R CMD build`... 2021-05-19T20:37:48.5061054Z * checking for file ‘/tmp/RtmpyeTstA/remotes665ca68105a/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-19T20:37:48.5062735Z * preparing ‘sysreqs’: 2021-05-19T20:37:48.5063871Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:37:48.5065345Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:37:48.5066420Z * checking for empty or unneeded directories 2021-05-19T20:37:48.5067507Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:37:48.5068547Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-19T20:37:48.5070508Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:37:48.5071424Z (as ‘lib’ is unspecified) 2021-05-19T20:37:48.6888439Z * installing *source* package ‘sysreqs’ ... 2021-05-19T20:37:48.6890194Z ** using staged installation 2021-05-19T20:37:48.7002089Z ** R 2021-05-19T20:37:48.7032149Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:37:49.0551439Z ** help 2021-05-19T20:37:49.0745327Z *** installing help indices 2021-05-19T20:37:49.0895135Z ** building package indices 2021-05-19T20:37:49.2585979Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:37:49.4438453Z ** testing if installed package can be loaded from final location 2021-05-19T20:37:49.6157735Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:37:49.6163898Z * DONE (sysreqs) 2021-05-19T20:38:06.2844567Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-19T20:38:06.2846888Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-19T20:38:06.2848487Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-19T20:38:06.3048218Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-19T20:38:06.3484421Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-19T20:38:06.4420999Z Hit:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-19T20:38:06.5581245Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-19T20:38:06.6110214Z Hit:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-19T20:38:07.9260848Z Reading package lists... 2021-05-19T20:38:07.9985739Z Reading package lists... 2021-05-19T20:38:08.1705708Z Building dependency tree... 2021-05-19T20:38:08.1727426Z Reading state information... 2021-05-19T20:38:08.3279209Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-19T20:38:08.3280699Z libicu-dev set to manually installed. 2021-05-19T20:38:08.3281767Z pandoc is already the newest version (2.7.3-1). 2021-05-19T20:38:08.3282711Z The following additional packages will be installed: 2021-05-19T20:38:08.3284160Z libbibutils6 libghc-pandoc-citeproc-data libssl1.1 2021-05-19T20:38:08.3286678Z Suggested packages: 2021-05-19T20:38:08.3287884Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev libssl-doc 2021-05-19T20:38:08.3801365Z The following NEW packages will be installed: 2021-05-19T20:38:08.3808109Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-19T20:38:08.3810320Z pandoc-citeproc 2021-05-19T20:38:08.3818261Z The following packages will be upgraded: 2021-05-19T20:38:08.3822008Z libssl-dev libssl1.1 2021-05-19T20:38:08.4240994Z 2 upgraded, 4 newly installed, 0 to remove and 15 not upgraded. 2021-05-19T20:38:08.4241884Z Need to get 16.6 MB of archives. 2021-05-19T20:38:08.4243402Z After this operation, 109 MB of additional disk space will be used. 2021-05-19T20:38:08.5029710Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl-dev amd64 1.1.1f-1ubuntu2.4 [1583 kB] 2021-05-19T20:38:08.5031840Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu2.4 [1319 kB] 2021-05-19T20:38:08.6080776Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-19T20:38:08.6226374Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-19T20:38:08.6418051Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-19T20:38:08.6517725Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-19T20:38:09.4789488Z Preconfiguring packages ... 2021-05-19T20:38:09.5616925Z Fetched 16.6 MB in 1s (23.2 MB/s) 2021-05-19T20:38:09.6025986Z (Reading database ... 2021-05-19T20:38:09.6027796Z (Reading database ... 5% 2021-05-19T20:38:09.6028606Z (Reading database ... 10% 2021-05-19T20:38:09.6029270Z (Reading database ... 15% 2021-05-19T20:38:09.6029905Z (Reading database ... 20% 2021-05-19T20:38:09.6030570Z (Reading database ... 25% 2021-05-19T20:38:09.6031387Z (Reading database ... 30% 2021-05-19T20:38:09.6032018Z (Reading database ... 35% 2021-05-19T20:38:09.6032648Z (Reading database ... 40% 2021-05-19T20:38:09.6033276Z (Reading database ... 45% 2021-05-19T20:38:09.6039317Z (Reading database ... 50% 2021-05-19T20:38:09.6147456Z (Reading database ... 55% 2021-05-19T20:38:09.6191972Z (Reading database ... 60% 2021-05-19T20:38:09.6262442Z (Reading database ... 65% 2021-05-19T20:38:09.6291946Z (Reading database ... 70% 2021-05-19T20:38:09.6597709Z (Reading database ... 75% 2021-05-19T20:38:09.6632439Z (Reading database ... 80% 2021-05-19T20:38:09.6694724Z (Reading database ... 85% 2021-05-19T20:38:09.6806928Z (Reading database ... 90% 2021-05-19T20:38:09.7237725Z (Reading database ... 95% 2021-05-19T20:38:09.7241185Z (Reading database ... 100% 2021-05-19T20:38:09.7242000Z (Reading database ... 259136 files and directories currently installed.) 2021-05-19T20:38:09.7356696Z Preparing to unpack .../0-libssl-dev_1.1.1f-1ubuntu2.4_amd64.deb ... 2021-05-19T20:38:09.7386915Z Unpacking libssl-dev:amd64 (1.1.1f-1ubuntu2.4) over (1.1.1f-1ubuntu2.3) ... 2021-05-19T20:38:09.9368113Z Preparing to unpack .../1-libssl1.1_1.1.1f-1ubuntu2.4_amd64.deb ... 2021-05-19T20:38:09.9394019Z Unpacking libssl1.1:amd64 (1.1.1f-1ubuntu2.4) over (1.1.1f-1ubuntu2.3) ... 2021-05-19T20:38:10.0736881Z Selecting previously unselected package libbibutils6. 2021-05-19T20:38:10.0974076Z Preparing to unpack .../2-libbibutils6_6.2-1_amd64.deb ... 2021-05-19T20:38:10.0987145Z Unpacking libbibutils6 (6.2-1) ... 2021-05-19T20:38:10.1697623Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-19T20:38:10.1912667Z Preparing to unpack .../3-libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-19T20:38:10.1925372Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-19T20:38:10.2537515Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-19T20:38:10.2728128Z Preparing to unpack .../4-libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-19T20:38:10.2741315Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-19T20:38:10.3017825Z Selecting previously unselected package pandoc-citeproc. 2021-05-19T20:38:10.3286051Z Preparing to unpack .../5-pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-19T20:38:10.3294123Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-19T20:38:10.3331341Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-19T20:38:11.6591535Z Setting up libssl1.1:amd64 (1.1.1f-1ubuntu2.4) ... 2021-05-19T20:38:11.7799098Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-19T20:38:11.7824188Z Setting up libbibutils6 (6.2-1) ... 2021-05-19T20:38:11.7852046Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-19T20:38:11.7879489Z Setting up libssl-dev:amd64 (1.1.1f-1ubuntu2.4) ... 2021-05-19T20:38:11.7907274Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-19T20:38:11.7940762Z Processing triggers for man-db (2.9.1-1) ... 2021-05-19T20:38:14.8961023Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-19T20:38:16.5361829Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-19T20:38:16.5362510Z remotes::install_github("ropensci/tic") 2021-05-19T20:38:16.5363114Z remotes::install_github("muschellij2/ghtravis") 2021-05-19T20:38:16.5363757Z remotes::install_github("muschellij2/aghast") 2021-05-19T20:38:16.5364334Z remotes::install_cran("covr") 2021-05-19T20:38:16.5371184Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:38:16.5371581Z env: 2021-05-19T20:38:16.5372017Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:38:16.5372446Z TIC_DEPLOY_KEY: 2021-05-19T20:38:16.5373194Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:38:16.5374660Z GITHUB_PAT: *** 2021-05-19T20:38:16.5375957Z COVERALLS_TOKEN: *** 2021-05-19T20:38:16.5376425Z continue-on-error: true 2021-05-19T20:38:16.5376875Z VDIFFR_RUN_TESTS: 2021-05-19T20:38:16.5377454Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:38:16.5377898Z TZ: UTC 2021-05-19T20:38:16.5378265Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:38:16.5378636Z NOT_CRAN: true 2021-05-19T20:38:16.5378985Z ##[endgroup] 2021-05-19T20:38:16.7252826Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:38:17.1381010Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-19T20:38:33.0219804Z rlang (NA -> 0.4.11) [CRAN] 2021-05-19T20:38:33.0220993Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-19T20:38:33.0221824Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-19T20:38:33.0222683Z sys (NA -> 3.4 ) [CRAN] 2021-05-19T20:38:33.0223457Z askpass (NA -> 1.1 ) [CRAN] 2021-05-19T20:38:33.0224241Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-19T20:38:33.0225022Z mime (NA -> 0.10 ) [CRAN] 2021-05-19T20:38:33.0225774Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-19T20:38:33.0226534Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-19T20:38:33.0227297Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-19T20:38:33.0228719Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-19T20:38:33.0229525Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-19T20:38:33.0230246Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-19T20:38:33.0230937Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-19T20:38:33.0231638Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-19T20:38:33.0232391Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:38:33.0233123Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-19T20:38:33.0233802Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-19T20:38:33.0234493Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-19T20:38:33.0235191Z whisker (NA -> 0.4 ) [CRAN] 2021-05-19T20:38:33.0235897Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-19T20:38:33.0236640Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-19T20:38:33.0237360Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:38:33.0238059Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:38:33.0238740Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:38:33.0239420Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-19T20:38:33.0240102Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-19T20:38:33.0240803Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-19T20:38:33.0241504Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-19T20:38:33.0242203Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-19T20:38:33.0243773Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-19T20:38:33.0245337Z git2r (NA -> 0.28.0) [CRAN] 2021-05-19T20:38:33.0254481Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:38:33.0255479Z (as ‘lib’ is unspecified) 2021-05-19T20:38:47.8164969Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-19T20:38:47.8457699Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-19T20:38:47.8736506Z ================================================== 2021-05-19T20:38:47.8737658Z downloaded 839 KB 2021-05-19T20:38:47.8738581Z 2021-05-19T20:38:47.8772405Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-19T20:38:48.4024686Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-19T20:38:48.4196321Z ================================================== 2021-05-19T20:38:48.4196881Z downloaded 258 KB 2021-05-19T20:38:48.4197149Z 2021-05-19T20:38:48.4238897Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-19T20:38:49.4295250Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-19T20:38:49.4350163Z ================================================== 2021-05-19T20:38:49.4350715Z downloaded 97 KB 2021-05-19T20:38:49.4351016Z 2021-05-19T20:38:49.4391061Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-19T20:38:50.1709783Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-19T20:38:50.1711852Z ================================================== 2021-05-19T20:38:50.1712551Z downloaded 19 KB 2021-05-19T20:38:50.1712999Z 2021-05-19T20:38:50.1754608Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-19T20:38:50.5102324Z Content type 'application/x-tar' length 5688 bytes 2021-05-19T20:38:50.5103606Z ================================================== 2021-05-19T20:38:50.5104246Z downloaded 5688 bytes 2021-05-19T20:38:50.5104709Z 2021-05-19T20:38:50.5141243Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-19T20:38:50.8980103Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-19T20:38:50.9264482Z ================================================== 2021-05-19T20:38:50.9265302Z downloaded 1.3 MB 2021-05-19T20:38:50.9265656Z 2021-05-19T20:38:50.9300916Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-19T20:38:51.3134405Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-19T20:38:51.3135354Z ================================================== 2021-05-19T20:38:51.3136140Z downloaded 12 KB 2021-05-19T20:38:51.3136666Z 2021-05-19T20:38:51.3174470Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-19T20:38:51.7009657Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-19T20:38:51.7264809Z ================================================== 2021-05-19T20:38:51.7265660Z downloaded 779 KB 2021-05-19T20:38:51.7266057Z 2021-05-19T20:38:51.7301430Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-19T20:38:52.1122159Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-19T20:38:52.1322112Z ================================================== 2021-05-19T20:38:52.1322992Z downloaded 412 KB 2021-05-19T20:38:52.1323407Z 2021-05-19T20:38:52.1357513Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-19T20:38:52.6960362Z Content type 'application/x-tar' length 3475 bytes 2021-05-19T20:38:52.6961098Z ================================================== 2021-05-19T20:38:52.6961595Z downloaded 3475 bytes 2021-05-19T20:38:52.6961908Z 2021-05-19T20:38:52.6997812Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-19T20:38:52.9806100Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-19T20:38:52.9928665Z ================================================== 2021-05-19T20:38:52.9929593Z downloaded 156 KB 2021-05-19T20:38:52.9930051Z 2021-05-19T20:38:52.9962725Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-19T20:38:53.3950053Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-19T20:38:53.4004582Z ================================================== 2021-05-19T20:38:53.4005396Z downloaded 60 KB 2021-05-19T20:38:53.4006008Z 2021-05-19T20:38:53.4045954Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-19T20:38:53.7887547Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-19T20:38:53.8009129Z ================================================== 2021-05-19T20:38:53.8009972Z downloaded 154 KB 2021-05-19T20:38:53.8010500Z 2021-05-19T20:38:53.8049505Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-19T20:38:54.1232892Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-19T20:38:54.1338897Z ================================================== 2021-05-19T20:38:54.1339436Z downloaded 110 KB 2021-05-19T20:38:54.1341093Z 2021-05-19T20:38:54.1379829Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-19T20:38:54.5355210Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-19T20:38:54.5433666Z ================================================== 2021-05-19T20:38:54.5434480Z downloaded 107 KB 2021-05-19T20:38:54.5435081Z 2021-05-19T20:38:54.5474178Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-19T20:38:55.7788318Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-19T20:38:55.7956993Z ================================================== 2021-05-19T20:38:55.7957975Z downloaded 225 KB 2021-05-19T20:38:55.7958649Z 2021-05-19T20:38:55.7996312Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-19T20:38:56.0420407Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-19T20:38:56.0475749Z ================================================== 2021-05-19T20:38:56.0476606Z downloaded 43 KB 2021-05-19T20:38:56.0477189Z 2021-05-19T20:38:56.0513768Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-19T20:38:56.3104912Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-19T20:38:56.3174673Z ================================================== 2021-05-19T20:38:56.3175874Z downloaded 90 KB 2021-05-19T20:38:56.3176217Z 2021-05-19T20:38:56.3216873Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-19T20:38:56.7040623Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-19T20:38:56.7110094Z ================================================== 2021-05-19T20:38:56.7110972Z downloaded 92 KB 2021-05-19T20:38:56.7111512Z 2021-05-19T20:38:56.7145756Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-19T20:38:57.0974948Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-19T20:38:57.0977261Z ================================================== 2021-05-19T20:38:57.0977913Z downloaded 28 KB 2021-05-19T20:38:57.0978363Z 2021-05-19T20:38:57.1018855Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-19T20:38:57.3650252Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-19T20:38:57.3651506Z ================================================== 2021-05-19T20:38:57.3652114Z downloaded 12 KB 2021-05-19T20:38:57.3652557Z 2021-05-19T20:38:57.3689082Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-19T20:38:57.8985463Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-19T20:38:57.9173074Z ================================================== 2021-05-19T20:38:57.9173733Z downloaded 364 KB 2021-05-19T20:38:57.9174043Z 2021-05-19T20:38:57.9208881Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-19T20:38:58.3089990Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-19T20:38:58.3150930Z ================================================== 2021-05-19T20:38:58.3151454Z downloaded 81 KB 2021-05-19T20:38:58.3151724Z 2021-05-19T20:38:58.3192920Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-19T20:38:58.8250210Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-19T20:38:58.8251403Z ================================================== 2021-05-19T20:38:58.8252047Z downloaded 44 KB 2021-05-19T20:38:58.8252489Z 2021-05-19T20:38:58.8288897Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-19T20:38:59.0537776Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-19T20:38:59.0592263Z ================================================== 2021-05-19T20:38:59.0593376Z downloaded 64 KB 2021-05-19T20:38:59.0593849Z 2021-05-19T20:38:59.0635925Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-19T20:38:59.4493168Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-19T20:38:59.4746404Z ================================================== 2021-05-19T20:38:59.4746955Z downloaded 781 KB 2021-05-19T20:38:59.4747225Z 2021-05-19T20:38:59.4785863Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-19T20:38:59.7036947Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-19T20:38:59.7039267Z ================================================== 2021-05-19T20:38:59.7039701Z downloaded 20 KB 2021-05-19T20:38:59.7039962Z 2021-05-19T20:38:59.7079311Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-19T20:39:00.1472065Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-19T20:39:00.1474798Z ================================================== 2021-05-19T20:39:00.1475311Z downloaded 24 KB 2021-05-19T20:39:00.1475609Z 2021-05-19T20:39:00.1517308Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-19T20:39:00.6578188Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-19T20:39:00.6753096Z ================================================== 2021-05-19T20:39:00.6754174Z downloaded 297 KB 2021-05-19T20:39:00.6754704Z 2021-05-19T20:39:00.6792057Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-19T20:39:00.9084233Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-19T20:39:00.9085706Z ================================================== 2021-05-19T20:39:00.9086586Z downloaded 17 KB 2021-05-19T20:39:00.9086892Z 2021-05-19T20:39:00.9122182Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-19T20:39:01.3011747Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-19T20:39:01.3335173Z ================================================== 2021-05-19T20:39:01.3335926Z downloaded 1.2 MB 2021-05-19T20:39:01.3336200Z 2021-05-19T20:39:01.8296928Z * installing *source* package ‘rlang’ ... 2021-05-19T20:39:01.8424415Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:01.8427033Z ** using staged installation 2021-05-19T20:39:01.8582519Z ** libs 2021-05-19T20:39:01.8643609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-19T20:39:01.9604616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-19T20:39:02.8208762Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-19T20:39:04.4369523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-19T20:39:05.4299910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-19T20:39:05.4684023Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:05.5138172Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-19T20:39:05.5164672Z ** R 2021-05-19T20:39:05.5604781Z ** inst 2021-05-19T20:39:05.5613570Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:08.9659934Z ** help 2021-05-19T20:39:09.6102993Z *** installing help indices 2021-05-19T20:39:09.8760929Z *** copying figures 2021-05-19T20:39:09.8765603Z ** building package indices 2021-05-19T20:39:10.3485442Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:10.5294078Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:10.5502657Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:10.7879532Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:10.7916990Z * DONE (rlang) 2021-05-19T20:39:11.0548683Z * installing *source* package ‘magrittr’ ... 2021-05-19T20:39:11.0575058Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:11.0576493Z ** using staged installation 2021-05-19T20:39:11.0704077Z ** libs 2021-05-19T20:39:11.0753600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-19T20:39:11.1960918Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:39:11.2498844Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:11.2737619Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-19T20:39:11.2739323Z ** R 2021-05-19T20:39:11.2778330Z ** inst 2021-05-19T20:39:11.2792469Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:11.5632569Z ** help 2021-05-19T20:39:11.6037715Z *** installing help indices 2021-05-19T20:39:11.6335068Z *** copying figures 2021-05-19T20:39:11.6338117Z ** building package indices 2021-05-19T20:39:11.8319584Z ** installing vignettes 2021-05-19T20:39:11.8382934Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:12.0119238Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:12.0296702Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:12.2014804Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:12.2022345Z * DONE (magrittr) 2021-05-19T20:39:12.4455377Z * installing *source* package ‘glue’ ... 2021-05-19T20:39:12.4461890Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:12.4462943Z ** using staged installation 2021-05-19T20:39:12.4621167Z ** libs 2021-05-19T20:39:12.4665250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-19T20:39:12.5815095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:12.6264460Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-19T20:39:12.7108374Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:12.7338182Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-19T20:39:12.7339413Z ** R 2021-05-19T20:39:12.7378326Z ** inst 2021-05-19T20:39:12.7388680Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:13.1624926Z ** help 2021-05-19T20:39:13.1908771Z *** installing help indices 2021-05-19T20:39:13.2198628Z *** copying figures 2021-05-19T20:39:13.2200916Z ** building package indices 2021-05-19T20:39:13.3959456Z ** installing vignettes 2021-05-19T20:39:13.4010073Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:13.5986291Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:13.6154910Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:13.8341831Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:13.8349412Z * DONE (glue) 2021-05-19T20:39:14.0274813Z * installing *source* package ‘sys’ ... 2021-05-19T20:39:14.0285458Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:14.0286499Z ** using staged installation 2021-05-19T20:39:14.0461704Z ** libs 2021-05-19T20:39:14.0505766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-19T20:39:14.2206165Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:14.2617162Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:14.2857459Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-19T20:39:14.2858767Z ** R 2021-05-19T20:39:14.2878102Z ** inst 2021-05-19T20:39:14.2885990Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:14.5639496Z ** help 2021-05-19T20:39:14.5822704Z *** installing help indices 2021-05-19T20:39:14.5995100Z ** building package indices 2021-05-19T20:39:14.7723579Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:14.9453169Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:14.9616987Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:15.1171576Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:15.1177460Z * DONE (sys) 2021-05-19T20:39:15.3145575Z * installing *source* package ‘mime’ ... 2021-05-19T20:39:15.3154256Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:15.3155292Z ** using staged installation 2021-05-19T20:39:15.3282522Z ** libs 2021-05-19T20:39:15.3331175Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:15.3733001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-19T20:39:15.4271655Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:15.4421547Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-19T20:39:15.4436437Z ** R 2021-05-19T20:39:15.4490713Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:15.7661186Z ** help 2021-05-19T20:39:15.7848497Z *** installing help indices 2021-05-19T20:39:15.7985446Z ** building package indices 2021-05-19T20:39:15.9644150Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:16.1370564Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:16.1537109Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:16.3087461Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:16.3093609Z * DONE (mime) 2021-05-19T20:39:16.6514170Z * installing *source* package ‘curl’ ... 2021-05-19T20:39:16.6591143Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:16.6592250Z ** using staged installation 2021-05-19T20:39:16.6674334Z Found pkg-config cflags and libs! 2021-05-19T20:39:16.7445210Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-19T20:39:16.7446249Z Using PKG_LIBS=-lcurl 2021-05-19T20:39:16.7919864Z ** libs 2021-05-19T20:39:16.7973218Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-19T20:39:16.8001665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-19T20:39:16.8719904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-19T20:39:16.9807635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-19T20:39:17.0574131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-19T20:39:17.1124152Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-19T20:39:17.2122394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-19T20:39:17.2744842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-19T20:39:17.3227741Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-19T20:39:17.6091525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-19T20:39:17.6470944Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:17.6973412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-19T20:39:17.7548899Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-19T20:39:17.9217394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-19T20:39:17.9699946Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-19T20:39:18.0245106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-19T20:39:18.0666600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-19T20:39:18.1082698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-19T20:39:18.1563875Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:39:18.2626375Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-19T20:39:18.3284787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-19T20:39:18.3473097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-19T20:39:18.3918477Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:18.4297470Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-19T20:39:18.4298308Z ** R 2021-05-19T20:39:18.4363038Z ** inst 2021-05-19T20:39:18.4397211Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:18.9445563Z ** help 2021-05-19T20:39:18.9863145Z *** installing help indices 2021-05-19T20:39:19.0162118Z ** building package indices 2021-05-19T20:39:19.2180535Z ** installing vignettes 2021-05-19T20:39:19.2245034Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:19.3920152Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:19.4118843Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:19.5821621Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:19.5830113Z * DONE (curl) 2021-05-19T20:39:19.8715104Z * installing *source* package ‘jsonlite’ ... 2021-05-19T20:39:19.8764247Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:19.8765449Z ** using staged installation 2021-05-19T20:39:19.8888455Z ** libs 2021-05-19T20:39:19.8941741Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:39:19.9592606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-19T20:39:20.0096478Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-19T20:39:20.0716623Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-19T20:39:20.1675651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-19T20:39:20.2283009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-19T20:39:20.2753032Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-19T20:39:20.3175106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-19T20:39:20.3667673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-19T20:39:20.4155130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-19T20:39:20.5279534Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-19T20:39:20.5879878Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-19T20:39:20.6602366Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-19T20:39:20.7228267Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-19T20:39:20.7834661Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-19T20:39:20.8380567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-19T20:39:20.8854358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-19T20:39:20.9248681Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-19T20:39:20.9831048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-19T20:39:21.0279398Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-19T20:39:21.0721409Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-19T20:39:21.1254698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-19T20:39:21.1559268Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-19T20:39:21.1985367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-19T20:39:21.2825940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-19T20:39:21.4886271Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-19T20:39:21.7407198Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-19T20:39:21.9034950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-19T20:39:22.0236701Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-19T20:39:22.0322563Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:22.0658347Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-19T20:39:22.0659776Z ** R 2021-05-19T20:39:22.0811605Z ** inst 2021-05-19T20:39:22.0828620Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:23.8281992Z ** help 2021-05-19T20:39:23.8283597Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-19T20:39:23.8292666Z *** installing help indices 2021-05-19T20:39:23.8293430Z ** building package indices 2021-05-19T20:39:23.8294172Z ** installing vignettes 2021-05-19T20:39:23.8295571Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:23.8296673Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:23.8297722Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:23.8298850Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:23.8299695Z * DONE (jsonlite) 2021-05-19T20:39:23.9378298Z * installing *source* package ‘ini’ ... 2021-05-19T20:39:23.9387088Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:23.9388181Z ** using staged installation 2021-05-19T20:39:23.9493694Z ** R 2021-05-19T20:39:23.9518830Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:24.1649914Z ** help 2021-05-19T20:39:24.1769911Z *** installing help indices 2021-05-19T20:39:24.1994439Z ** building package indices 2021-05-19T20:39:24.3847048Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:24.5628764Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:24.7327810Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:24.7333087Z * DONE (ini) 2021-05-19T20:39:24.9630454Z * installing *source* package ‘gitcreds’ ... 2021-05-19T20:39:24.9648428Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:24.9649684Z ** using staged installation 2021-05-19T20:39:24.9756546Z ** R 2021-05-19T20:39:24.9813786Z ** inst 2021-05-19T20:39:24.9824136Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:25.4561290Z ** help 2021-05-19T20:39:25.4812557Z *** installing help indices 2021-05-19T20:39:25.5037237Z ** building package indices 2021-05-19T20:39:25.6932600Z ** installing vignettes 2021-05-19T20:39:25.6985554Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:25.8694772Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:26.0434926Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:26.0443136Z * DONE (gitcreds) 2021-05-19T20:39:26.2851887Z * installing *source* package ‘zip’ ... 2021-05-19T20:39:26.2876541Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:26.2877743Z ** using staged installation 2021-05-19T20:39:26.2977824Z ** libs 2021-05-19T20:39:26.3029834Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-19T20:39:28.9416105Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-19T20:39:31.5485612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:31.5929148Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-19T20:39:33.9721747Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-19T20:39:34.0630884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-19T20:39:34.1895025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-19T20:39:34.2516255Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:34.2777685Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-19T20:39:34.2829369Z ** R 2021-05-19T20:39:34.2867265Z ** inst 2021-05-19T20:39:34.2877582Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:34.6083374Z ** help 2021-05-19T20:39:34.6286778Z *** installing help indices 2021-05-19T20:39:34.6523774Z ** building package indices 2021-05-19T20:39:34.8440691Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:35.0215140Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:35.0399432Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:35.2149633Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:35.2156675Z * DONE (zip) 2021-05-19T20:39:35.5028152Z * installing *source* package ‘rstudioapi’ ... 2021-05-19T20:39:35.5067744Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:35.5068961Z ** using staged installation 2021-05-19T20:39:35.5193646Z ** R 2021-05-19T20:39:35.5292664Z ** inst 2021-05-19T20:39:35.5311024Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:36.0422997Z ** help 2021-05-19T20:39:36.2051834Z *** installing help indices 2021-05-19T20:39:36.3207601Z *** copying figures 2021-05-19T20:39:36.3211460Z ** building package indices 2021-05-19T20:39:36.6088118Z ** installing vignettes 2021-05-19T20:39:36.6162895Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:36.7883582Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:36.9659387Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:36.9669097Z * DONE (rstudioapi) 2021-05-19T20:39:37.1850443Z * installing *source* package ‘fastmap’ ... 2021-05-19T20:39:37.1866230Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:37.1921461Z ** using staged installation 2021-05-19T20:39:37.2036887Z ** libs 2021-05-19T20:39:37.2087074Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-19T20:39:39.0690138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:39.1150428Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:39.1783985Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-19T20:39:39.1805012Z ** R 2021-05-19T20:39:39.1852285Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:39.6025158Z ** help 2021-05-19T20:39:39.6197185Z *** installing help indices 2021-05-19T20:39:39.6379304Z ** building package indices 2021-05-19T20:39:39.8257756Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:40.0015573Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:40.0196549Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:40.1931903Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:40.1940410Z * DONE (fastmap) 2021-05-19T20:39:40.4359137Z * installing *source* package ‘yaml’ ... 2021-05-19T20:39:40.4383912Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:40.4384823Z ** using staged installation 2021-05-19T20:39:40.4477404Z ** libs 2021-05-19T20:39:40.4528178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-19T20:39:40.7734418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-19T20:39:40.8824697Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-19T20:39:41.7778764Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-19T20:39:41.9393574Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-19T20:39:42.0632864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-19T20:39:42.4070929Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-19T20:39:42.6833247Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-19T20:39:42.7833046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-19T20:39:43.1782449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-19T20:39:43.2822198Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-19T20:39:44.5433602Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-19T20:39:44.6027272Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:44.6323960Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-19T20:39:44.6343900Z ** R 2021-05-19T20:39:44.6371682Z ** inst 2021-05-19T20:39:44.6384880Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:44.8773920Z ** help 2021-05-19T20:39:44.8979032Z *** installing help indices 2021-05-19T20:39:44.9218972Z ** building package indices 2021-05-19T20:39:45.1115996Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:45.2881190Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:45.3061276Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:45.4778361Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:45.4784183Z * DONE (yaml) 2021-05-19T20:39:45.7359177Z * installing *source* package ‘withr’ ... 2021-05-19T20:39:45.7385489Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:45.7386952Z ** using staged installation 2021-05-19T20:39:45.7540331Z ** R 2021-05-19T20:39:45.7624594Z ** inst 2021-05-19T20:39:45.7635141Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:46.3855839Z ** help 2021-05-19T20:39:46.4625898Z *** installing help indices 2021-05-19T20:39:46.5188504Z *** copying figures 2021-05-19T20:39:46.5191323Z ** building package indices 2021-05-19T20:39:46.7457832Z ** installing vignettes 2021-05-19T20:39:46.7522239Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:46.9264132Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:47.0893147Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:47.0902824Z * DONE (withr) 2021-05-19T20:39:47.2971264Z * installing *source* package ‘whisker’ ... 2021-05-19T20:39:47.2985652Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:47.2986743Z ** using staged installation 2021-05-19T20:39:47.3069687Z ** R 2021-05-19T20:39:47.3105380Z ** inst 2021-05-19T20:39:47.3122175Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:47.7002961Z ** help 2021-05-19T20:39:47.7194829Z *** installing help indices 2021-05-19T20:39:47.7398421Z ** building package indices 2021-05-19T20:39:47.9290172Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:48.1059386Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:48.2668563Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:48.2677660Z * DONE (whisker) 2021-05-19T20:39:48.4829315Z * installing *source* package ‘rappdirs’ ... 2021-05-19T20:39:48.4840048Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:48.4841116Z ** using staged installation 2021-05-19T20:39:48.5063490Z ** libs 2021-05-19T20:39:48.5113634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:39:48.5519388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-19T20:39:48.5970645Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:39:48.6124467Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-19T20:39:48.6139004Z ** R 2021-05-19T20:39:48.6179818Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:39:48.9121909Z ** help 2021-05-19T20:39:48.9334091Z *** installing help indices 2021-05-19T20:39:48.9523188Z ** building package indices 2021-05-19T20:39:49.1502179Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:39:49.3283775Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:39:49.3463755Z ** testing if installed package can be loaded from final location 2021-05-19T20:39:49.5179068Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:39:49.5185742Z * DONE (rappdirs) 2021-05-19T20:39:49.9799084Z * installing *source* package ‘fs’ ... 2021-05-19T20:39:49.9928889Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-19T20:39:49.9930274Z ** using staged installation 2021-05-19T20:39:50.0087985Z ** libs 2021-05-19T20:39:50.0151080Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-19T20:39:50.5340080Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-19T20:39:50.9394066Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-19T20:39:51.2285535Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-19T20:39:51.4905625Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-19T20:39:51.8316570Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-19T20:39:51.9046704Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-19T20:39:51.9911804Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-19T20:39:52.4082275Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-19T20:39:52.6930135Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-19T20:39:52.7904180Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-19T20:39:53.5720053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-19T20:39:53.8992746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-19T20:39:53.9457931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-19T20:39:53.9747155Z (cd libuv-1.38.1 \ 2021-05-19T20:39:53.9749351Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-19T20:39:58.0252007Z make --directory=libuv-1.38.1 \ 2021-05-19T20:39:58.0253003Z HAVE_DTRACE=0 2021-05-19T20:39:58.0337860Z make[1]: Entering directory '/tmp/RtmpFkuiys/R.INSTALL75d94899351a/fs/src/libuv-1.38.1' 2021-05-19T20:39:58.0429608Z CC src/libuv_la-fs-poll.lo 2021-05-19T20:39:58.6276666Z CC src/libuv_la-idna.lo 2021-05-19T20:39:59.2195739Z CC src/libuv_la-inet.lo 2021-05-19T20:39:59.8479313Z CC src/libuv_la-random.lo 2021-05-19T20:40:00.3560004Z CC src/libuv_la-strscpy.lo 2021-05-19T20:40:00.8229866Z CC src/libuv_la-threadpool.lo 2021-05-19T20:40:01.4597326Z CC src/libuv_la-timer.lo 2021-05-19T20:40:02.0522606Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-19T20:40:02.5475368Z CC src/libuv_la-uv-common.lo 2021-05-19T20:40:03.5896495Z CC src/libuv_la-version.lo 2021-05-19T20:40:04.0551980Z CC src/unix/libuv_la-async.lo 2021-05-19T20:40:04.6404361Z CC src/unix/libuv_la-core.lo 2021-05-19T20:40:05.7384003Z CC src/unix/libuv_la-dl.lo 2021-05-19T20:40:06.2129311Z CC src/unix/libuv_la-fs.lo 2021-05-19T20:40:07.6496618Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-19T20:40:08.2343518Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-19T20:40:08.7519287Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-19T20:40:09.3443194Z CC src/unix/libuv_la-loop.lo 2021-05-19T20:40:09.9195749Z CC src/unix/libuv_la-pipe.lo 2021-05-19T20:40:10.5471036Z CC src/unix/libuv_la-poll.lo 2021-05-19T20:40:11.0755818Z CC src/unix/libuv_la-process.lo 2021-05-19T20:40:11.8059954Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-19T20:40:12.3170455Z CC src/unix/libuv_la-signal.lo 2021-05-19T20:40:13.1953926Z CC src/unix/libuv_la-stream.lo 2021-05-19T20:40:14.2281724Z CC src/unix/libuv_la-tcp.lo 2021-05-19T20:40:14.8710995Z CC src/unix/libuv_la-thread.lo 2021-05-19T20:40:15.5408071Z CC src/unix/libuv_la-tty.lo 2021-05-19T20:40:16.1022821Z CC src/unix/libuv_la-udp.lo 2021-05-19T20:40:17.0590101Z CC src/unix/libuv_la-linux-core.lo 2021-05-19T20:40:17.9937045Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-19T20:40:18.7562359Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-19T20:40:19.1945969Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-19T20:40:19.6814636Z CC src/unix/libuv_la-proctitle.lo 2021-05-19T20:40:20.1847834Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-19T20:40:20.6612913Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-19T20:40:21.1771512Z CCLD libuv.la 2021-05-19T20:40:21.3737729Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-19T20:40:21.4048789Z make[1]: Leaving directory '/tmp/RtmpFkuiys/R.INSTALL75d94899351a/fs/src/libuv-1.38.1' 2021-05-19T20:40:21.4067375Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o utils.o link.o path.o fs.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:21.4939776Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-19T20:40:21.4969967Z ** R 2021-05-19T20:40:21.5066552Z ** inst 2021-05-19T20:40:21.5077644Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:22.5046852Z ** help 2021-05-19T20:40:22.5670481Z *** installing help indices 2021-05-19T20:40:22.6126295Z ** building package indices 2021-05-19T20:40:22.8376163Z ** installing vignettes 2021-05-19T20:40:22.8455052Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:23.0521007Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:23.0696960Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:23.3010274Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:23.3020520Z * DONE (fs) 2021-05-19T20:40:23.5262010Z * installing *source* package ‘clipr’ ... 2021-05-19T20:40:23.5274576Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:23.5275627Z ** using staged installation 2021-05-19T20:40:23.5478936Z ** R 2021-05-19T20:40:23.5517703Z ** inst 2021-05-19T20:40:23.5526919Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:23.8385757Z ** help 2021-05-19T20:40:23.8592347Z *** installing help indices 2021-05-19T20:40:23.8797066Z ** building package indices 2021-05-19T20:40:24.0523839Z ** installing vignettes 2021-05-19T20:40:24.0573258Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:24.2300060Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:24.4031394Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:24.4037978Z * DONE (clipr) 2021-05-19T20:40:25.1270885Z * installing *source* package ‘git2r’ ... 2021-05-19T20:40:25.1505274Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:25.1506970Z ** using staged installation 2021-05-19T20:40:25.3257381Z checking build system type... x86_64-unknown-linux-gnu 2021-05-19T20:40:25.3258800Z checking host system type... x86_64-unknown-linux-gnu 2021-05-19T20:40:25.3259554Z checking for gcc... gcc 2021-05-19T20:40:25.3837961Z checking whether the C compiler works... yes 2021-05-19T20:40:25.3839262Z checking for C compiler default output file name... a.out 2021-05-19T20:40:25.4202919Z checking for suffix of executables... 2021-05-19T20:40:25.4610303Z checking whether we are cross compiling... no 2021-05-19T20:40:25.4838433Z checking for suffix of object files... o 2021-05-19T20:40:25.5046403Z checking whether we are using the GNU C compiler... yes 2021-05-19T20:40:25.5255683Z checking whether gcc accepts -g... yes 2021-05-19T20:40:25.5611164Z checking for gcc option to accept ISO C89... none needed 2021-05-19T20:40:25.5619428Z checking for pkg-config... /usr/bin/pkg-config 2021-05-19T20:40:25.5633501Z checking pkg-config is at least version 0.9.0... yes 2021-05-19T20:40:25.5881214Z Found pkg-config cflags and libs! 2021-05-19T20:40:25.6781557Z checking whether the libgit2 version will work in git2r... yes 2021-05-19T20:40:25.7971106Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-19T20:40:25.9160199Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-19T20:40:26.0346874Z checking whether the libgit2 function git_error_last is available... yes 2021-05-19T20:40:26.1355726Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-19T20:40:26.1357911Z ----- Results of the git2r package configure ----- 2021-05-19T20:40:26.1358601Z 2021-05-19T20:40:26.1360195Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-19T20:40:26.1360967Z PKG_LIBS: -lgit2 2021-05-19T20:40:26.1361272Z 2021-05-19T20:40:26.1362121Z -------------------------------------------------- 2021-05-19T20:40:26.1556424Z configure: creating ./config.status 2021-05-19T20:40:26.2277590Z config.status: creating src/Makevars 2021-05-19T20:40:26.2828155Z ** libs 2021-05-19T20:40:26.2889706Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-19T20:40:26.3535097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-19T20:40:26.4024261Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-19T20:40:26.5514846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-19T20:40:26.6381434Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-19T20:40:26.7544117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-19T20:40:26.9709311Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-19T20:40:27.0589160Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-19T20:40:27.1461707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-19T20:40:27.2922258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-19T20:40:27.4429559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-19T20:40:27.5318041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-19T20:40:27.7691856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-19T20:40:27.8319338Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-19T20:40:27.9131630Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-19T20:40:27.9945137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-19T20:40:28.0712916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-19T20:40:28.2389488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-19T20:40:28.3619179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-19T20:40:28.4411093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-19T20:40:28.5940848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-19T20:40:28.6565151Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-19T20:40:28.7350353Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-19T20:40:28.8260910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-19T20:40:28.9084217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-19T20:40:29.0762594Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-19T20:40:29.2235315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-19T20:40:29.3016062Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-19T20:40:29.3777997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-19T20:40:29.5315943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-19T20:40:29.6073182Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-19T20:40:29.7073484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-19T20:40:29.8438429Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-19T20:40:29.9534938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-19T20:40:30.0166071Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-19T20:40:30.1271929Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:30.1670486Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-19T20:40:30.1690737Z ** R 2021-05-19T20:40:30.1880612Z ** inst 2021-05-19T20:40:30.1889933Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:31.1251635Z ** help 2021-05-19T20:40:31.3384662Z *** installing help indices 2021-05-19T20:40:31.5137270Z ** building package indices 2021-05-19T20:40:31.8226146Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:31.9945324Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:32.0111828Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:32.1902204Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:32.1916017Z * DONE (git2r) 2021-05-19T20:40:32.3856555Z * installing *source* package ‘askpass’ ... 2021-05-19T20:40:32.3865056Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:32.3866894Z ** using staged installation 2021-05-19T20:40:32.3987181Z ** libs 2021-05-19T20:40:32.4035649Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-19T20:40:32.4491688Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:32.4698093Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-19T20:40:32.4710531Z ** R 2021-05-19T20:40:32.4737504Z ** inst 2021-05-19T20:40:32.4744756Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:32.7008427Z ** help 2021-05-19T20:40:32.7170142Z *** installing help indices 2021-05-19T20:40:32.7299090Z ** building package indices 2021-05-19T20:40:32.8996816Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:33.0578099Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:33.0732797Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:33.2298618Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:33.2304141Z * DONE (askpass) 2021-05-19T20:40:33.5372088Z * installing *source* package ‘cli’ ... 2021-05-19T20:40:33.5423128Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:33.5424329Z ** using staged installation 2021-05-19T20:40:33.5599512Z ** R 2021-05-19T20:40:33.5840175Z ** inst 2021-05-19T20:40:33.5852113Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:35.9458734Z ** help 2021-05-19T20:40:36.1173959Z *** installing help indices 2021-05-19T20:40:36.2368334Z *** copying figures 2021-05-19T20:40:36.2369748Z ** building package indices 2021-05-19T20:40:36.5090479Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:36.7084464Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:36.9483206Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:36.9512193Z * DONE (cli) 2021-05-19T20:40:37.2403173Z * installing *source* package ‘purrr’ ... 2021-05-19T20:40:37.2448520Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:37.2449709Z ** using staged installation 2021-05-19T20:40:37.2582760Z ** libs 2021-05-19T20:40:37.2630442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-19T20:40:37.2971491Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-19T20:40:37.3779746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-19T20:40:37.4545904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-19T20:40:37.5515442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:40:37.5910620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-19T20:40:37.6970234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-19T20:40:37.8182121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-19T20:40:37.8933860Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:40:37.9413317Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:37.9657169Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-19T20:40:37.9658233Z ** R 2021-05-19T20:40:37.9798800Z ** inst 2021-05-19T20:40:37.9807932Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:39.0568200Z ** help 2021-05-19T20:40:39.2089791Z *** installing help indices 2021-05-19T20:40:39.3027933Z *** copying figures 2021-05-19T20:40:39.3032903Z ** building package indices 2021-05-19T20:40:39.5490114Z ** installing vignettes 2021-05-19T20:40:39.5569501Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:39.7399486Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:39.7565964Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:39.9524923Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:39.9540167Z * DONE (purrr) 2021-05-19T20:40:40.1912875Z * installing *source* package ‘lifecycle’ ... 2021-05-19T20:40:40.1936785Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:40.1938061Z ** using staged installation 2021-05-19T20:40:40.2066482Z ** R 2021-05-19T20:40:40.2109552Z ** inst 2021-05-19T20:40:40.2120319Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:40.5919927Z ** help 2021-05-19T20:40:40.6207677Z *** installing help indices 2021-05-19T20:40:40.6428400Z *** copying figures 2021-05-19T20:40:40.6432686Z ** building package indices 2021-05-19T20:40:40.8216443Z ** installing vignettes 2021-05-19T20:40:40.8253706Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:41.0013186Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:41.1753269Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:41.1762788Z * DONE (lifecycle) 2021-05-19T20:40:41.3684524Z * installing *source* package ‘cachem’ ... 2021-05-19T20:40:41.3694649Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:41.3696025Z ** using staged installation 2021-05-19T20:40:41.3811627Z ** libs 2021-05-19T20:40:41.3854806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-19T20:40:41.4295838Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:40:41.4713124Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:41.4911037Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-19T20:40:41.4923515Z ** R 2021-05-19T20:40:41.5042901Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:41.9815567Z ** help 2021-05-19T20:40:42.0021503Z *** installing help indices 2021-05-19T20:40:42.0196912Z ** building package indices 2021-05-19T20:40:42.1948417Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:42.3769789Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:42.3928093Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:42.5750585Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:42.5758584Z * DONE (cachem) 2021-05-19T20:40:42.9787281Z * installing *source* package ‘openssl’ ... 2021-05-19T20:40:42.9899746Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:42.9901061Z ** using staged installation 2021-05-19T20:40:42.9979486Z Found pkg-config cflags and libs! 2021-05-19T20:40:43.0716136Z Using PKG_CFLAGS= 2021-05-19T20:40:43.1916497Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-19T20:40:43.2062074Z ** libs 2021-05-19T20:40:43.2115694Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-19T20:40:43.2138850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-19T20:40:43.2886966Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:40:43.3597119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-19T20:40:43.4489642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-19T20:40:43.5818827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-19T20:40:43.6407167Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-19T20:40:43.7249894Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-19T20:40:43.8301114Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-19T20:40:43.8788264Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-19T20:40:43.9658202Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-19T20:40:44.0242364Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-19T20:40:44.1156685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-19T20:40:44.2334051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-19T20:40:44.3146171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-19T20:40:44.4788005Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-19T20:40:44.5284086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-19T20:40:44.5689387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-19T20:40:44.6846351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-19T20:40:44.8093273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-19T20:40:44.9216884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-19T20:40:44.9638315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-19T20:40:45.0520839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-19T20:40:45.1604506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-19T20:40:45.2878093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-19T20:40:45.3910882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-19T20:40:45.5076082Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-19T20:40:45.6183183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-19T20:40:45.6824070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-19T20:40:45.8383902Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-19T20:40:45.8434365Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:40:45.8964834Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-19T20:40:45.8980081Z ** R 2021-05-19T20:40:45.9074820Z ** inst 2021-05-19T20:40:45.9121268Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:46.7673123Z ** help 2021-05-19T20:40:46.8145945Z *** installing help indices 2021-05-19T20:40:46.8491846Z ** building package indices 2021-05-19T20:40:47.0468287Z ** installing vignettes 2021-05-19T20:40:47.0601784Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:47.2290965Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:40:47.2449497Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:47.4215046Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:47.4228300Z * DONE (openssl) 2021-05-19T20:40:47.6185631Z * installing *source* package ‘memoise’ ... 2021-05-19T20:40:47.6195713Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:47.6196850Z ** using staged installation 2021-05-19T20:40:47.6333385Z ** R 2021-05-19T20:40:47.6432024Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:48.0037208Z ** help 2021-05-19T20:40:48.0266784Z *** installing help indices 2021-05-19T20:40:48.0489676Z ** building package indices 2021-05-19T20:40:48.2324367Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:48.4140343Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:48.5955412Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:48.5961718Z * DONE (memoise) 2021-05-19T20:40:48.9113430Z * installing *source* package ‘httr’ ... 2021-05-19T20:40:48.9161929Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:48.9163135Z ** using staged installation 2021-05-19T20:40:48.9317210Z ** R 2021-05-19T20:40:48.9488040Z ** demo 2021-05-19T20:40:48.9500524Z ** inst 2021-05-19T20:40:48.9515452Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:55.4512871Z ** help 2021-05-19T20:40:55.6062445Z *** installing help indices 2021-05-19T20:40:55.7131456Z ** building package indices 2021-05-19T20:40:56.4340397Z ** installing vignettes 2021-05-19T20:40:56.4409306Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:56.8137240Z ** testing if installed package can be loaded from final location 2021-05-19T20:40:57.4014774Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:40:57.4087821Z * DONE (httr) 2021-05-19T20:40:57.6613450Z * installing *source* package ‘credentials’ ... 2021-05-19T20:40:57.6630587Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-19T20:40:57.6633382Z ** using staged installation 2021-05-19T20:40:57.6765469Z ** R 2021-05-19T20:40:57.6809989Z ** inst 2021-05-19T20:40:57.6824928Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:40:58.6180421Z ** help 2021-05-19T20:40:58.6366027Z *** installing help indices 2021-05-19T20:40:58.6567908Z ** building package indices 2021-05-19T20:40:58.8576552Z ** installing vignettes 2021-05-19T20:40:58.8702482Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:40:59.4844463Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:00.0527448Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:00.0534414Z * DONE (credentials) 2021-05-19T20:41:00.3094479Z * installing *source* package ‘gh’ ... 2021-05-19T20:41:00.3110645Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-19T20:41:00.3113247Z ** using staged installation 2021-05-19T20:41:00.3257890Z ** R 2021-05-19T20:41:00.3339948Z ** inst 2021-05-19T20:41:00.3350852Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:41:02.9457257Z ** help 2021-05-19T20:41:02.9735981Z *** installing help indices 2021-05-19T20:41:03.0041295Z ** building package indices 2021-05-19T20:41:03.5101806Z ** installing vignettes 2021-05-19T20:41:03.5162034Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:41:04.1474024Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:04.8047276Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:04.8058692Z * DONE (gh) 2021-05-19T20:41:05.2924073Z * installing *source* package ‘gert’ ... 2021-05-19T20:41:05.2997862Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-19T20:41:05.3003617Z ** using staged installation 2021-05-19T20:41:05.3110753Z Found pkg-config cflags and libs! 2021-05-19T20:41:05.4642560Z Using PKG_CFLAGS= 2021-05-19T20:41:05.4644240Z Using PKG_LIBS=-lgit2 2021-05-19T20:41:05.5068764Z Configuration OK! 2021-05-19T20:41:05.5226050Z ** libs 2021-05-19T20:41:05.5292374Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-19T20:41:05.5332215Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-19T20:41:05.7628239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-19T20:41:06.0138914Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-19T20:41:06.2592691Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-19T20:41:06.3594535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-19T20:41:06.4477978Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-19T20:41:06.8279902Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:41:06.9822974Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-19T20:41:07.1026865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-19T20:41:07.2161652Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-19T20:41:07.3166829Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-19T20:41:07.6065586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-19T20:41:07.7031879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:41:07.8431197Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-19T20:41:07.9359679Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:41:07.9699587Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-19T20:41:07.9711835Z ** R 2021-05-19T20:41:07.9797819Z ** inst 2021-05-19T20:41:07.9807581Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:41:09.5388045Z ** help 2021-05-19T20:41:09.5999678Z *** installing help indices 2021-05-19T20:41:09.6439146Z ** building package indices 2021-05-19T20:41:10.2057673Z ** installing vignettes 2021-05-19T20:41:10.2142593Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:41:10.7431027Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:41:10.7764544Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:11.0720571Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:11.0729759Z * DONE (gert) 2021-05-19T20:41:11.4837899Z * installing *source* package ‘usethis’ ... 2021-05-19T20:41:11.4915550Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-19T20:41:11.4918537Z ** using staged installation 2021-05-19T20:41:11.5153077Z ** R 2021-05-19T20:41:11.5484948Z ** inst 2021-05-19T20:41:11.5519740Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:41:18.5254057Z ** help 2021-05-19T20:41:18.7232366Z *** installing help indices 2021-05-19T20:41:18.8579628Z *** copying figures 2021-05-19T20:41:18.8581278Z ** building package indices 2021-05-19T20:41:19.3567174Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:41:20.0877919Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:20.9384682Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:20.9413635Z * DONE (usethis) 2021-05-19T20:41:20.9525164Z 2021-05-19T20:41:20.9526249Z The downloaded source packages are in 2021-05-19T20:41:20.9527591Z ‘/tmp/RtmplHpZht/downloaded_packages’ 2021-05-19T20:41:20.9564420Z Running `R CMD build`... 2021-05-19T20:41:25.0885211Z * checking for file ‘/tmp/RtmplHpZht/remotes6f2f751083a8/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-19T20:41:25.0886788Z * preparing ‘tic’: 2021-05-19T20:41:25.0887758Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:41:25.0888664Z * installing the package to process help pages 2021-05-19T20:41:25.0889806Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:41:25.0890756Z * checking for empty or unneeded directories 2021-05-19T20:41:25.0891721Z Removed empty directory ‘tic/.circleci’ 2021-05-19T20:41:25.0892668Z Removed empty directory ‘tic/pkgdown’ 2021-05-19T20:41:25.0893553Z * building ‘tic_0.10.0.tar.gz’ 2021-05-19T20:41:25.0905389Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:41:25.0906492Z (as ‘lib’ is unspecified) 2021-05-19T20:41:25.4444318Z * installing *source* package ‘tic’ ... 2021-05-19T20:41:25.4446097Z ** using staged installation 2021-05-19T20:41:25.4675965Z ** R 2021-05-19T20:41:25.4862912Z ** inst 2021-05-19T20:41:25.4895076Z ** preparing package for lazy loading 2021-05-19T20:41:26.4211665Z ** help 2021-05-19T20:41:26.5756808Z *** installing help indices 2021-05-19T20:41:26.6743406Z *** copying figures 2021-05-19T20:41:26.6747150Z ** building package indices 2021-05-19T20:41:27.3616472Z ** installing vignettes 2021-05-19T20:41:27.3655952Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:41:27.6263237Z ** testing if installed package can be loaded from final location 2021-05-19T20:41:27.9374029Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:41:27.9403207Z * DONE (tic) 2021-05-19T20:41:27.9534011Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:41:28.1398488Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-19T20:41:28.9865843Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-19T20:41:28.9867264Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-19T20:41:28.9868332Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-19T20:41:28.9869286Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-19T20:41:28.9870234Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-19T20:41:28.9871745Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-19T20:41:28.9872530Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-19T20:41:28.9873248Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-19T20:41:28.9874014Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-19T20:41:28.9885547Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-19T20:41:28.9887683Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-19T20:41:28.9888831Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:41:28.9889802Z (as ‘lib’ is unspecified) 2021-05-19T20:41:28.9890872Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-19T20:41:28.9891737Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-19T20:41:28.9892615Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:41:28.9893479Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-19T20:41:28.9894332Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-19T20:41:28.9895226Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-19T20:41:28.9896269Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-19T20:41:28.9897090Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-19T20:41:28.9897934Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-19T20:41:28.9898825Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-19T20:41:28.9899643Z xfun (NA -> 0.23 ) [CRAN] 2021-05-19T20:41:28.9900502Z markdown (NA -> 1.1 ) [CRAN] 2021-05-19T20:41:28.9901351Z highr (NA -> 0.9 ) [CRAN] 2021-05-19T20:41:28.9902214Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-19T20:41:28.9903080Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-19T20:41:28.9903933Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-19T20:41:28.9904750Z knitr (NA -> 1.33 ) [CRAN] 2021-05-19T20:41:28.9905608Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-19T20:41:28.9906460Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-19T20:41:28.9907306Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-19T20:41:28.9908194Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-19T20:41:28.9909106Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-19T20:41:28.9909975Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-19T20:41:28.9911163Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-19T20:41:28.9912068Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-19T20:41:28.9912959Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-19T20:41:28.9913832Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-19T20:41:28.9914721Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-19T20:41:43.3053968Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-19T20:41:43.6867755Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-19T20:41:43.7047694Z ================================================== 2021-05-19T20:41:43.7048585Z downloaded 232 KB 2021-05-19T20:41:43.7049140Z 2021-05-19T20:41:43.7089875Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-19T20:41:44.0961312Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-19T20:41:44.1214653Z ================================================== 2021-05-19T20:41:44.1215195Z downloaded 766 KB 2021-05-19T20:41:44.1215569Z 2021-05-19T20:41:44.1247031Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-19T20:41:44.5440208Z Content type 'application/x-tar' length 6108 bytes 2021-05-19T20:41:44.5442946Z ================================================== 2021-05-19T20:41:44.5443474Z downloaded 6108 bytes 2021-05-19T20:41:44.5443772Z 2021-05-19T20:41:44.5484350Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-19T20:41:44.7978951Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-19T20:41:44.8257989Z ================================================== 2021-05-19T20:41:44.8259178Z downloaded 1.1 MB 2021-05-19T20:41:44.8259732Z 2021-05-19T20:41:44.8293996Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-19T20:41:45.2255585Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-19T20:41:45.3361687Z ================================================== 2021-05-19T20:41:45.3362313Z downloaded 673 KB 2021-05-19T20:41:45.3362618Z 2021-05-19T20:41:45.3402921Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-19T20:41:45.7320299Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-19T20:41:45.7320988Z ================================================== 2021-05-19T20:41:45.7321381Z downloaded 13 KB 2021-05-19T20:41:45.7321642Z 2021-05-19T20:41:45.7357519Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-19T20:41:46.4290871Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-19T20:41:46.4459399Z ================================================== 2021-05-19T20:41:46.4459938Z downloaded 264 KB 2021-05-19T20:41:46.4460239Z 2021-05-19T20:41:46.4573085Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-19T20:41:46.8426691Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-19T20:41:46.8642711Z ================================================== 2021-05-19T20:41:46.8643258Z downloaded 464 KB 2021-05-19T20:41:46.8643529Z 2021-05-19T20:41:46.8680395Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-19T20:41:47.2507544Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-19T20:41:47.2516067Z ================================================== 2021-05-19T20:41:47.2516539Z downloaded 25 KB 2021-05-19T20:41:47.2516800Z 2021-05-19T20:41:47.2553678Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-19T20:41:47.6391222Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-19T20:41:47.6503184Z ================================================== 2021-05-19T20:41:47.6503953Z downloaded 117 KB 2021-05-19T20:41:47.6504231Z 2021-05-19T20:41:47.6542921Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-19T20:41:48.0398247Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-19T20:41:48.0510246Z ================================================== 2021-05-19T20:41:48.0511102Z downloaded 138 KB 2021-05-19T20:41:48.0511633Z 2021-05-19T20:41:48.0549119Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-19T20:41:48.4393859Z Content type 'application/x-tar' length 6100 bytes 2021-05-19T20:41:48.4395983Z ================================================== 2021-05-19T20:41:48.4396436Z downloaded 6100 bytes 2021-05-19T20:41:48.4396712Z 2021-05-19T20:41:48.4434557Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-19T20:41:48.8261030Z Content type 'binary/octet-stream' length 60723 bytes (59 KB) 2021-05-19T20:41:48.8315366Z ================================================== 2021-05-19T20:41:48.8315851Z downloaded 59 KB 2021-05-19T20:41:48.8316117Z 2021-05-19T20:41:48.8352834Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-19T20:41:49.2238759Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-19T20:41:49.2241750Z ================================================== 2021-05-19T20:41:49.2242591Z downloaded 23 KB 2021-05-19T20:41:49.2243124Z 2021-05-19T20:41:49.2282592Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-19T20:41:49.7394464Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-19T20:41:49.7395238Z ================================================== 2021-05-19T20:41:49.7395710Z downloaded 8130 bytes 2021-05-19T20:41:49.7396046Z 2021-05-19T20:41:49.7436924Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-19T20:41:50.7298735Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-19T20:41:50.7423447Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-19T20:41:51.7785494Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-19T20:41:51.7952722Z ================================================== 2021-05-19T20:41:51.7953274Z downloaded 266 KB 2021-05-19T20:41:51.7953543Z 2021-05-19T20:41:51.7990962Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-19T20:41:52.1908713Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-19T20:41:52.2013418Z ================================================== 2021-05-19T20:41:52.2013928Z downloaded 109 KB 2021-05-19T20:41:52.2014181Z 2021-05-19T20:41:52.2050907Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-19T20:41:52.6531786Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-19T20:41:52.6533418Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.2.tar.gz' 2021-05-19T20:41:53.8966430Z Content type 'binary/octet-stream' length 7578882 bytes (7.2 MB) 2021-05-19T20:41:54.0049578Z ================================================== 2021-05-19T20:41:54.0050448Z downloaded 7.2 MB 2021-05-19T20:41:54.0051017Z 2021-05-19T20:41:54.0088605Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-19T20:41:54.2338421Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-19T20:41:54.2769065Z ================================================== 2021-05-19T20:41:54.2770115Z downloaded 2.8 MB 2021-05-19T20:41:54.2770590Z 2021-05-19T20:41:54.2804717Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-19T20:41:54.7861417Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-19T20:41:54.8137906Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-19T20:41:55.9927547Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-19T20:41:55.9928962Z ================================================== 2021-05-19T20:41:55.9929684Z downloaded 11 KB 2021-05-19T20:41:55.9930200Z 2021-05-19T20:41:55.9959778Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-19T20:41:56.4252421Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-19T20:41:56.4304538Z ================================================== 2021-05-19T20:41:56.4305334Z downloaded 43 KB 2021-05-19T20:41:56.4305806Z 2021-05-19T20:41:56.4345626Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-19T20:41:56.8156749Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-19T20:41:56.8157884Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-19T20:41:58.1143505Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-19T20:41:58.1170279Z ================================================== 2021-05-19T20:41:58.1171298Z downloaded 39 KB 2021-05-19T20:41:58.1171841Z 2021-05-19T20:41:58.1205712Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-19T20:41:58.3450791Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-19T20:41:58.3642067Z ================================================== 2021-05-19T20:41:58.3643063Z downloaded 249 KB 2021-05-19T20:41:58.3643615Z 2021-05-19T20:41:58.3677896Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-19T20:41:58.7113613Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-19T20:41:58.7114990Z ================================================== 2021-05-19T20:41:58.7115708Z downloaded 43 KB 2021-05-19T20:41:58.7116203Z 2021-05-19T20:41:58.7151968Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-19T20:41:59.2219695Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-19T20:41:59.2406274Z ================================================== 2021-05-19T20:41:59.2407394Z downloaded 361 KB 2021-05-19T20:41:59.2407939Z 2021-05-19T20:41:59.5542773Z * installing *source* package ‘utf8’ ... 2021-05-19T20:41:59.5604149Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-19T20:41:59.5606671Z ** using staged installation 2021-05-19T20:41:59.5736643Z ** libs 2021-05-19T20:41:59.5789580Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-19T20:41:59.6437287Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-19T20:41:59.7817606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-19T20:41:59.8411286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:41:59.8829040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-19T20:41:59.9439316Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-19T20:42:00.1017082Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-19T20:42:00.1628721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-19T20:42:00.2886336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-19T20:42:00.3666235Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-19T20:42:00.4537203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-19T20:42:00.5205969Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-19T20:42:00.5783928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-19T20:42:00.6396131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-19T20:42:00.6940418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-19T20:42:00.7489289Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-19T20:42:00.8167556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-19T20:42:00.8753206Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-19T20:42:00.9146750Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-19T20:42:00.9781582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-19T20:42:01.0233719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-19T20:42:01.2202468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-19T20:42:01.5131242Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-19T20:42:01.6908374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-19T20:42:01.7597674Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-19T20:42:01.8201565Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-19T20:42:01.8906598Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-19T20:42:01.9604457Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-19T20:42:01.9681879Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:02.0018742Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-19T20:42:02.0020120Z ** R 2021-05-19T20:42:02.0091591Z ** inst 2021-05-19T20:42:02.0100153Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:02.4532515Z ** help 2021-05-19T20:42:02.4816247Z *** installing help indices 2021-05-19T20:42:02.5055754Z ** building package indices 2021-05-19T20:42:02.7037677Z ** installing vignettes 2021-05-19T20:42:02.7038522Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:02.8790085Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:02.8965091Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:03.0759006Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:03.0766627Z * DONE (utf8) 2021-05-19T20:42:03.2840097Z * installing *source* package ‘pkgconfig’ ... 2021-05-19T20:42:03.2848990Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:03.2850043Z ** using staged installation 2021-05-19T20:42:03.2960580Z ** R 2021-05-19T20:42:03.2985532Z ** inst 2021-05-19T20:42:03.2993284Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:03.5250080Z ** help 2021-05-19T20:42:03.5465288Z *** installing help indices 2021-05-19T20:42:03.5630954Z ** building package indices 2021-05-19T20:42:03.7524307Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:03.9268254Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:04.0991508Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:04.0997289Z * DONE (pkgconfig) 2021-05-19T20:42:04.3713687Z * installing *source* package ‘fansi’ ... 2021-05-19T20:42:04.3747695Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:04.3748656Z ** using staged installation 2021-05-19T20:42:04.3876507Z ** libs 2021-05-19T20:42:04.3955137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-19T20:42:04.4303653Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-19T20:42:04.4909012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:04.5361135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-19T20:42:04.5997232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-19T20:42:04.9898679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-19T20:42:05.0280012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-19T20:42:05.3502088Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-19T20:42:05.4835391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-19T20:42:05.5280183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-19T20:42:05.6367251Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-19T20:42:05.8494189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-19T20:42:05.9489606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-19T20:42:05.9989122Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-19T20:42:06.0501312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:42:06.1938828Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-19T20:42:06.4635458Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:06.4937770Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-19T20:42:06.4938980Z ** R 2021-05-19T20:42:06.5018612Z ** inst 2021-05-19T20:42:06.5028195Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:07.1007600Z ** help 2021-05-19T20:42:07.1591844Z *** installing help indices 2021-05-19T20:42:07.1934330Z ** building package indices 2021-05-19T20:42:07.4093025Z ** installing vignettes 2021-05-19T20:42:07.4147455Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:07.5777562Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:07.5952067Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:07.7761453Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:07.7771482Z * DONE (fansi) 2021-05-19T20:42:08.2079062Z * installing *source* package ‘diffobj’ ... 2021-05-19T20:42:08.2178532Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:08.2179799Z ** using staged installation 2021-05-19T20:42:08.2328541Z ** libs 2021-05-19T20:42:08.2374626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-19T20:42:08.4147910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-19T20:42:08.4678928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:08.5138103Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:08.5338565Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-19T20:42:08.5350514Z ** R 2021-05-19T20:42:08.5703411Z ** inst 2021-05-19T20:42:08.5719187Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:14.2556186Z ** help 2021-05-19T20:42:14.4526075Z *** installing help indices 2021-05-19T20:42:14.6021855Z ** building package indices 2021-05-19T20:42:14.8533102Z ** installing vignettes 2021-05-19T20:42:14.8598656Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:15.1569850Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:15.1739450Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:15.5423296Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:15.5500711Z * DONE (diffobj) 2021-05-19T20:42:15.8121059Z * installing *source* package ‘ps’ ... 2021-05-19T20:42:15.8155562Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:15.8156729Z ** using staged installation 2021-05-19T20:42:16.0069400Z ** libs 2021-05-19T20:42:16.0117312Z gcc -g -O2 -Wall px.c -o px 2021-05-19T20:42:16.1263055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:16.1858015Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-19T20:42:16.2459835Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-19T20:42:16.3047244Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-19T20:42:16.4579927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-19T20:42:16.5043610Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-19T20:42:16.7453745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-19T20:42:16.9029159Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-19T20:42:16.9928812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-19T20:42:17.0921101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-19T20:42:17.5182915Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:17.5459631Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-19T20:42:17.5496015Z ** R 2021-05-19T20:42:17.5601265Z ** inst 2021-05-19T20:42:17.5611926Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:18.4757015Z ** help 2021-05-19T20:42:18.6120395Z *** installing help indices 2021-05-19T20:42:18.7040349Z ** building package indices 2021-05-19T20:42:18.9505213Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:19.1292160Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:19.1461237Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:19.3185284Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:19.3198577Z * DONE (ps) 2021-05-19T20:42:19.5259990Z * installing *source* package ‘praise’ ... 2021-05-19T20:42:19.5269292Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:19.5270337Z ** using staged installation 2021-05-19T20:42:19.5372171Z ** R 2021-05-19T20:42:19.5409754Z ** inst 2021-05-19T20:42:19.5417463Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:19.7416285Z ** help 2021-05-19T20:42:19.7521219Z *** installing help indices 2021-05-19T20:42:19.7730873Z ** building package indices 2021-05-19T20:42:19.9589392Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:20.1156318Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:20.2703174Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:20.2708952Z * DONE (praise) 2021-05-19T20:42:20.5928216Z * installing *source* package ‘pkgload’ ... 2021-05-19T20:42:20.5974990Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:20.5976554Z ** using staged installation 2021-05-19T20:42:20.6115762Z ** R 2021-05-19T20:42:20.6215345Z ** inst 2021-05-19T20:42:20.6222082Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:21.3828815Z ** help 2021-05-19T20:42:21.4440525Z *** installing help indices 2021-05-19T20:42:21.4888580Z ** building package indices 2021-05-19T20:42:21.6890477Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:22.1429550Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:22.5621273Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:22.5635370Z * DONE (pkgload) 2021-05-19T20:42:22.7799182Z * installing *source* package ‘evaluate’ ... 2021-05-19T20:42:22.7814857Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:22.7816647Z ** using staged installation 2021-05-19T20:42:22.7938250Z ** R 2021-05-19T20:42:22.7983025Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:23.2829667Z ** help 2021-05-19T20:42:23.3081296Z *** installing help indices 2021-05-19T20:42:23.3368562Z ** building package indices 2021-05-19T20:42:23.5380059Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:23.6955776Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:23.8569143Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:23.8576512Z * DONE (evaluate) 2021-05-19T20:42:24.0492567Z * installing *source* package ‘ellipsis’ ... 2021-05-19T20:42:24.0501396Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:24.0502467Z ** using staged installation 2021-05-19T20:42:24.0625988Z ** libs 2021-05-19T20:42:24.0674297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-19T20:42:24.1393338Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:24.1799075Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:24.2019708Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-19T20:42:24.2033736Z ** R 2021-05-19T20:42:24.2066543Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:24.4668861Z ** help 2021-05-19T20:42:24.4893920Z *** installing help indices 2021-05-19T20:42:24.5068179Z ** building package indices 2021-05-19T20:42:24.6978852Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:24.8722100Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:24.8885630Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:25.0775286Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:25.0781590Z * DONE (ellipsis) 2021-05-19T20:42:25.3406095Z * installing *source* package ‘digest’ ... 2021-05-19T20:42:25.3440465Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:25.3443631Z ** using staged installation 2021-05-19T20:42:25.3553205Z ** libs 2021-05-19T20:42:25.3612973Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-19T20:42:25.5159902Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-19T20:42:25.7854539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-19T20:42:26.3045022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-19T20:42:26.5060180Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-19T20:42:26.9696602Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-19T20:42:27.0424171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-19T20:42:27.2288502Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-19T20:42:27.2789505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:27.3022884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-19T20:42:27.4260221Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-19T20:42:27.4733796Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-19T20:42:27.5368376Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-19T20:42:27.7905755Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-19T20:42:27.8909650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-19T20:42:28.4363511Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-19T20:42:28.5489214Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-19T20:42:28.7642469Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:28.8023243Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-19T20:42:28.8041768Z ** R 2021-05-19T20:42:28.8093013Z ** demo 2021-05-19T20:42:28.8097900Z ** inst 2021-05-19T20:42:28.8113867Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:29.2826599Z ** help 2021-05-19T20:42:29.3197342Z *** installing help indices 2021-05-19T20:42:29.3459598Z ** building package indices 2021-05-19T20:42:29.5258985Z ** installing vignettes 2021-05-19T20:42:29.5316056Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:29.7136727Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:29.7309662Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:29.8938765Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:29.8950271Z * DONE (digest) 2021-05-19T20:42:30.0922830Z * installing *source* package ‘brio’ ... 2021-05-19T20:42:30.0934236Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:30.0935291Z ** using staged installation 2021-05-19T20:42:30.1103358Z ** libs 2021-05-19T20:42:30.1149169Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-19T20:42:30.1518383Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-19T20:42:30.1951698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:30.2346312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-19T20:42:30.2867669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-19T20:42:30.3393422Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-19T20:42:30.4127379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-19T20:42:30.4590793Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-19T20:42:30.5148421Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:30.5380622Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-19T20:42:30.5394092Z ** R 2021-05-19T20:42:30.5427247Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:30.7693748Z ** help 2021-05-19T20:42:30.7877366Z *** installing help indices 2021-05-19T20:42:30.8054228Z ** building package indices 2021-05-19T20:42:30.9790111Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:31.1557717Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:31.1724021Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:31.3292942Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:31.3293858Z * DONE (brio) 2021-05-19T20:42:31.6158614Z * installing *source* package ‘xml2’ ... 2021-05-19T20:42:31.6197277Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:31.6198461Z ** using staged installation 2021-05-19T20:42:31.6269775Z Found pkg-config cflags and libs! 2021-05-19T20:42:31.7052864Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-19T20:42:31.7053915Z Using PKG_LIBS=-lxml2 2021-05-19T20:42:31.7547328Z ** libs 2021-05-19T20:42:31.7598263Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-19T20:42:32.2118731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:32.2572198Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-19T20:42:32.7852342Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-19T20:42:33.1971769Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-19T20:42:33.8727906Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-19T20:42:35.6630521Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-19T20:42:36.1730907Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-19T20:42:36.7262096Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-19T20:42:37.1689532Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-19T20:42:37.5802277Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:37.6697498Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-19T20:42:37.6716523Z ** R 2021-05-19T20:42:37.6823562Z ** inst 2021-05-19T20:42:37.6836686Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:38.6031818Z ** help 2021-05-19T20:42:38.6958550Z *** installing help indices 2021-05-19T20:42:38.7463856Z ** building package indices 2021-05-19T20:42:38.9731268Z ** installing vignettes 2021-05-19T20:42:38.9828918Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:39.1554346Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:39.1738507Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:39.3726527Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:39.3742327Z * DONE (xml2) 2021-05-19T20:42:39.6497814Z * installing *source* package ‘xfun’ ... 2021-05-19T20:42:39.6533903Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:39.6537784Z ** using staged installation 2021-05-19T20:42:39.6690776Z ** libs 2021-05-19T20:42:39.6769697Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:42:39.7634955Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:42:39.8087645Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:42:39.8417729Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-19T20:42:39.8419110Z ** R 2021-05-19T20:42:39.8540167Z ** inst 2021-05-19T20:42:39.8550810Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:42:41.0604474Z ** help 2021-05-19T20:42:41.2039312Z *** installing help indices 2021-05-19T20:42:41.3071694Z ** building package indices 2021-05-19T20:42:41.5578575Z ** installing vignettes 2021-05-19T20:42:41.5642726Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:42:41.7443888Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:42:41.7609091Z ** testing if installed package can be loaded from final location 2021-05-19T20:42:41.9389339Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:42:41.9404612Z * DONE (xfun) 2021-05-19T20:42:44.4392303Z * installing *source* package ‘stringi’ ... 2021-05-19T20:42:44.5500989Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-19T20:42:44.5501770Z ** using staged installation 2021-05-19T20:42:44.6684779Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-19T20:42:44.6685926Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-19T20:42:44.8251210Z checking for endianness... little 2021-05-19T20:42:44.9827709Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-19T20:42:45.1386721Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-19T20:42:45.1390796Z checking for cat... /usr/bin/cat 2021-05-19T20:42:45.3548040Z checking for local ICUDT_DIR... icu69/data 2021-05-19T20:42:45.3549135Z checking for gcc... gcc 2021-05-19T20:42:45.4126493Z checking whether the C compiler works... yes 2021-05-19T20:42:45.4127886Z checking for C compiler default output file name... a.out 2021-05-19T20:42:45.4493436Z checking for suffix of executables... 2021-05-19T20:42:45.4953365Z checking whether we are cross compiling... no 2021-05-19T20:42:45.5195791Z checking for suffix of object files... o 2021-05-19T20:42:45.5416083Z checking whether we are using the GNU C compiler... yes 2021-05-19T20:42:45.5620541Z checking whether gcc accepts -g... yes 2021-05-19T20:42:45.5972238Z checking for gcc option to accept ISO C89... none needed 2021-05-19T20:42:45.6172542Z checking how to run the C preprocessor... gcc -E 2021-05-19T20:42:45.6380788Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-19T20:42:45.6396031Z checking for egrep... /usr/bin/grep -E 2021-05-19T20:42:45.7395703Z checking for ANSI C header files... yes 2021-05-19T20:42:45.7673484Z checking for sys/types.h... yes 2021-05-19T20:42:45.7993802Z checking for sys/stat.h... yes 2021-05-19T20:42:45.8309596Z checking for stdlib.h... yes 2021-05-19T20:42:45.8626297Z checking for string.h... yes 2021-05-19T20:42:45.8946784Z checking for memory.h... yes 2021-05-19T20:42:45.9292470Z checking for strings.h... yes 2021-05-19T20:42:45.9616598Z checking for inttypes.h... yes 2021-05-19T20:42:45.9957398Z checking for stdint.h... yes 2021-05-19T20:42:46.0354334Z checking for unistd.h... yes 2021-05-19T20:42:46.0760856Z checking elf.h usability... yes 2021-05-19T20:42:46.0869683Z checking elf.h presence... yes 2021-05-19T20:42:46.0870651Z checking for elf.h... yes 2021-05-19T20:42:46.1290271Z checking whether we are using the GNU C++ compiler... yes 2021-05-19T20:42:46.1488689Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-19T20:42:46.4321190Z checking whether the C++ compiler supports the long long type... yes 2021-05-19T20:42:46.4558579Z checking whether the compiler implements namespaces... yes 2021-05-19T20:42:46.5817770Z checking whether the compiler supports Standard Template Library... yes 2021-05-19T20:42:47.0835508Z checking whether std::map is available... yes 2021-05-19T20:42:47.0855679Z checking for pkg-config... /usr/bin/pkg-config 2021-05-19T20:42:47.1166251Z checking with pkg-config for the system ICU4C... 66.1 2021-05-19T20:42:47.1192235Z checking for ICU4C >= 55... yes 2021-05-19T20:42:47.1258394Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-19T20:42:47.6199946Z checking whether an ICU4C-based project can be built... yes 2021-05-19T20:42:47.6775731Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-19T20:42:47.9232818Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-19T20:42:48.7908343Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-19T20:42:49.3668477Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-19T20:42:49.4003137Z configure: creating ./config.status 2021-05-19T20:42:49.4756394Z config.status: creating src/Makevars 2021-05-19T20:42:49.4925240Z config.status: creating src/uconfig_local.h 2021-05-19T20:42:49.5084653Z config.status: creating src/install.libs.R 2021-05-19T20:42:49.5236110Z 2021-05-19T20:42:49.5237032Z *** stringi configure summary: 2021-05-19T20:42:49.5237610Z ICU_FOUND=1 2021-05-19T20:42:49.5238176Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-19T20:42:49.5239243Z STRINGI_CFLAGS= -fpic 2021-05-19T20:42:49.5240126Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-19T20:42:49.5241131Z STRINGI_CXXFLAGS= -fpic 2021-05-19T20:42:49.5241953Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-19T20:42:49.5242812Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-19T20:42:49.5243348Z 2021-05-19T20:42:49.5244145Z *** Compiler settings used: 2021-05-19T20:42:49.5244576Z CC=gcc 2021-05-19T20:42:49.5246737Z LD=g++ -std=gnu++14 2021-05-19T20:42:49.5248783Z CFLAGS=-g -O2 -fpic 2021-05-19T20:42:49.5249462Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-19T20:42:49.5250038Z CXX=g++ -std=gnu++11 2021-05-19T20:42:49.5250517Z CXXFLAGS=-g -O2 -fpic 2021-05-19T20:42:49.5250881Z LDFLAGS= 2021-05-19T20:42:49.5251195Z LIBS= 2021-05-19T20:42:49.5251380Z 2021-05-19T20:42:49.5580600Z ** libs 2021-05-19T20:42:49.5708721Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-19T20:42:50.2407355Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-19T20:42:50.8522957Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-19T20:42:51.4321074Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-19T20:42:52.1420799Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-19T20:42:52.5950156Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-19T20:42:53.3425675Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-19T20:42:53.8879446Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-19T20:42:54.4102118Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-19T20:42:54.8960378Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-19T20:42:55.4574410Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-19T20:42:56.0243972Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-19T20:42:56.6620890Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-19T20:42:57.2488941Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-19T20:42:57.7823261Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-19T20:42:58.6203985Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-19T20:42:59.9977830Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-19T20:43:00.5953346Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-19T20:43:01.1792791Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-19T20:43:01.6447518Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-19T20:43:02.1043670Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-19T20:43:02.9162609Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-19T20:43:03.5078768Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-19T20:43:04.0579998Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-19T20:43:04.7372841Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-19T20:43:05.4180307Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-19T20:43:05.9215031Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-19T20:43:06.4808337Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-19T20:43:07.1099373Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-19T20:43:07.8608990Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-19T20:43:08.6042916Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-19T20:43:09.4774371Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-19T20:43:10.2798524Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-19T20:43:10.9860912Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-19T20:43:11.7263875Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-19T20:43:12.3621360Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-19T20:43:12.9994757Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-19T20:43:13.6283861Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-19T20:43:14.2770390Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-19T20:43:15.0684822Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-19T20:43:15.8593069Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-19T20:43:16.7149659Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-19T20:43:17.5328672Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-19T20:43:18.2522573Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-19T20:43:18.9923478Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-19T20:43:19.5350402Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-19T20:43:20.2262120Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-19T20:43:20.9090808Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-19T20:43:21.5986713Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-19T20:43:22.1670033Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-19T20:43:22.7324551Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-19T20:43:23.4723380Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-19T20:43:24.2037285Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-19T20:43:25.0120770Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-19T20:43:25.6931672Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-19T20:43:26.3482248Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-19T20:43:26.9372983Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-19T20:43:26.9515091Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-19T20:43:27.6934824Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-19T20:43:28.1997233Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-19T20:43:28.7082057Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-19T20:43:29.4117429Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-19T20:43:30.1505498Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-19T20:43:31.0513853Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-19T20:43:31.6505857Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-19T20:43:32.3489988Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-19T20:43:33.0033625Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-19T20:43:34.4500763Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-19T20:43:35.0109427Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-19T20:43:35.5207208Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-19T20:43:36.3214014Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-19T20:43:36.8441904Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-19T20:43:37.3581329Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-19T20:43:38.0835946Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-19T20:43:38.8114337Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-19T20:43:39.6869679Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-19T20:43:40.3511736Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-19T20:43:41.0445454Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-19T20:43:41.5984739Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-19T20:43:42.1233231Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-19T20:43:42.7277652Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-19T20:43:43.2538974Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-19T20:43:43.7592316Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-19T20:43:44.9651195Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:43:45.1818429Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-19T20:43:45.2554078Z ** R 2021-05-19T20:43:45.2845851Z ** inst 2021-05-19T20:43:45.2853797Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:43:46.2626262Z ** help 2021-05-19T20:43:46.7075011Z *** installing help indices 2021-05-19T20:43:46.9163114Z ** building package indices 2021-05-19T20:43:47.2806839Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:43:47.4635863Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:43:47.4843651Z ** testing if installed package can be loaded from final location 2021-05-19T20:43:47.6629830Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:43:47.6643706Z * DONE (stringi) 2021-05-19T20:43:48.6178143Z * installing *source* package ‘Rcpp’ ... 2021-05-19T20:43:48.6529186Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-19T20:43:48.6529946Z ** using staged installation 2021-05-19T20:43:48.6642058Z ** libs 2021-05-19T20:43:48.6692548Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-19T20:43:51.3471283Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-19T20:44:05.2493085Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-19T20:44:05.4441723Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-19T20:44:08.6554738Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-19T20:44:14.8857614Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-19T20:44:17.7197016Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:44:17.8897321Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-19T20:44:17.9014837Z ** R 2021-05-19T20:44:17.9147847Z ** inst 2021-05-19T20:44:17.9541393Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:19.6690615Z ** help 2021-05-19T20:44:19.7636597Z *** installing help indices 2021-05-19T20:44:19.8270137Z ** building package indices 2021-05-19T20:44:20.0696559Z ** installing vignettes 2021-05-19T20:44:20.0733150Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:20.3426038Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:20.3653753Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:20.6569654Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:20.6648958Z * DONE (Rcpp) 2021-05-19T20:44:20.9558617Z * installing *source* package ‘commonmark’ ... 2021-05-19T20:44:20.9599333Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:20.9602523Z ** using staged installation 2021-05-19T20:44:20.9719457Z ** libs 2021-05-19T20:44:20.9774592Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-19T20:44:20.9803520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-19T20:44:21.0256245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:44:21.0657824Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-19T20:44:21.1274882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-19T20:44:21.1745992Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-19T20:44:21.4449655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-19T20:44:21.5312727Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-19T20:44:21.9570150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-19T20:44:22.6620304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-19T20:44:24.3146559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-19T20:44:27.3862450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-19T20:44:27.5074091Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-19T20:44:27.5537723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-19T20:44:27.6506673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-19T20:44:27.7343697Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-19T20:44:27.8146153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-19T20:44:27.9964313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-19T20:44:28.1840036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-19T20:44:28.3054911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-19T20:44:28.3489256Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-19T20:44:28.3917926Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-19T20:44:28.4924629Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-19T20:44:28.5215359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-19T20:44:28.5797639Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-19T20:44:28.6211388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-19T20:44:28.6589309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-19T20:44:28.7067845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-19T20:44:28.7713722Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-19T20:44:28.8645717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-19T20:44:28.9088943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-19T20:44:28.9814410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-19T20:44:29.1441100Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-19T20:44:29.1746249Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-19T20:44:29.3062826Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-19T20:44:29.3835671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-19T20:44:29.6410685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-19T20:44:29.6924713Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-19T20:44:29.7050940Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:44:29.7519049Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-19T20:44:29.7555848Z ** R 2021-05-19T20:44:29.7585078Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:29.9868719Z ** help 2021-05-19T20:44:29.9990989Z *** installing help indices 2021-05-19T20:44:30.0149416Z ** building package indices 2021-05-19T20:44:30.2018116Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:30.3792090Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:30.3980494Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:30.5682945Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:30.5688798Z * DONE (commonmark) 2021-05-19T20:44:30.8090847Z * installing *source* package ‘brew’ ... 2021-05-19T20:44:30.8093716Z ** using staged installation 2021-05-19T20:44:30.8177674Z ** R 2021-05-19T20:44:30.8206034Z ** inst 2021-05-19T20:44:30.8233405Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:31.1656106Z ** help 2021-05-19T20:44:31.1797490Z *** installing help indices 2021-05-19T20:44:31.1963461Z ** building package indices 2021-05-19T20:44:31.3829260Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:31.5402873Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:31.7128740Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:31.7136933Z * DONE (brew) 2021-05-19T20:44:31.9307000Z * installing *source* package ‘sessioninfo’ ... 2021-05-19T20:44:31.9322395Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:31.9323248Z ** using staged installation 2021-05-19T20:44:31.9496828Z ** R 2021-05-19T20:44:31.9536730Z ** inst 2021-05-19T20:44:31.9544297Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:32.3771519Z ** help 2021-05-19T20:44:32.3915390Z *** installing help indices 2021-05-19T20:44:32.4074904Z ** building package indices 2021-05-19T20:44:32.5769482Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:32.7949666Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:32.9964513Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:32.9971251Z * DONE (sessioninfo) 2021-05-19T20:44:33.2026474Z * installing *source* package ‘prettyunits’ ... 2021-05-19T20:44:33.2036725Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:33.2037706Z ** using staged installation 2021-05-19T20:44:33.2143720Z ** R 2021-05-19T20:44:33.2181047Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:33.4937365Z ** help 2021-05-19T20:44:33.5201618Z *** installing help indices 2021-05-19T20:44:33.5399341Z ** building package indices 2021-05-19T20:44:33.7145054Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:33.8840538Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:34.0428437Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:34.0433809Z * DONE (prettyunits) 2021-05-19T20:44:34.5638822Z * installing *source* package ‘vctrs’ ... 2021-05-19T20:44:34.5781500Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:34.5782807Z ** using staged installation 2021-05-19T20:44:34.5957618Z ** libs 2021-05-19T20:44:34.6028748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-19T20:44:34.7029341Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-19T20:44:34.7783795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-19T20:44:34.8536551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-19T20:44:35.0618911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-19T20:44:35.1639699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-19T20:44:35.2846531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-19T20:44:35.3407282Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-19T20:44:35.4342797Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-19T20:44:35.4992343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-19T20:44:35.6182537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-19T20:44:35.8095121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-19T20:44:35.9225931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-19T20:44:36.0037111Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-19T20:44:36.2383959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-19T20:44:36.2924176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-19T20:44:36.6253514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-19T20:44:36.7123440Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-19T20:44:36.8288707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-19T20:44:36.9420749Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-19T20:44:36.9913917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-19T20:44:37.1903238Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:44:37.2493985Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-19T20:44:37.5439331Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-19T20:44:37.6164894Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-19T20:44:38.2252538Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-19T20:44:38.3702664Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-19T20:44:38.4382068Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-19T20:44:38.5082922Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-19T20:44:38.6580533Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-19T20:44:38.7505896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-19T20:44:38.8596453Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-19T20:44:38.9541757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-19T20:44:39.0780455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-19T20:44:39.3086759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-19T20:44:39.3946473Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-19T20:44:39.4662014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-19T20:44:39.5624742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-19T20:44:39.9523303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-19T20:44:40.2542632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-19T20:44:40.4596304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-19T20:44:40.6029062Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-19T20:44:40.8388403Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-19T20:44:40.8869276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-19T20:44:41.0536833Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-19T20:44:41.1787984Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-19T20:44:41.2697523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-19T20:44:41.5694437Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-19T20:44:41.7023687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-19T20:44:41.8172753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-19T20:44:41.9069548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-19T20:44:41.9708060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-19T20:44:42.0745749Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-19T20:44:42.1854055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-19T20:44:42.2920339Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-19T20:44:42.3797839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-19T20:44:42.4456720Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-19T20:44:42.5091593Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-19T20:44:42.5564403Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:44:43.1024781Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-19T20:44:43.1389203Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:44:43.1938252Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-19T20:44:43.1956076Z ** R 2021-05-19T20:44:43.2257831Z ** inst 2021-05-19T20:44:43.2277685Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:45.7098792Z ** help 2021-05-19T20:44:45.9392252Z *** installing help indices 2021-05-19T20:44:46.1143037Z *** copying figures 2021-05-19T20:44:46.1150839Z ** building package indices 2021-05-19T20:44:46.4056390Z ** installing vignettes 2021-05-19T20:44:46.4215134Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:46.6300177Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:46.6479675Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:46.9049161Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:46.9084384Z * DONE (vctrs) 2021-05-19T20:44:47.1675634Z * installing *source* package ‘processx’ ... 2021-05-19T20:44:47.1708093Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:47.1709290Z ** using staged installation 2021-05-19T20:44:47.1866801Z ** libs 2021-05-19T20:44:47.1917194Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-19T20:44:47.3120062Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-19T20:44:47.3121384Z supervisor/utils.c -o supervisor/supervisor 2021-05-19T20:44:47.4628652Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:44:47.5374237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-19T20:44:47.6179417Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-19T20:44:47.6706860Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-19T20:44:47.6708365Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-19T20:44:47.6911269Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:44:47.7550760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-19T20:44:47.8433362Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-19T20:44:48.1398883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-19T20:44:48.2206913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-19T20:44:48.3197532Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-19T20:44:48.4051295Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-19T20:44:48.4729619Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-19T20:44:48.7477488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-19T20:44:48.8332102Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-19T20:44:48.9252137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-19T20:44:48.9743288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-19T20:44:49.0406871Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:44:49.0658196Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-19T20:44:49.0692896Z ** R 2021-05-19T20:44:49.0810212Z ** inst 2021-05-19T20:44:49.0817604Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:50.5268103Z ** help 2021-05-19T20:44:50.5992345Z *** installing help indices 2021-05-19T20:44:50.6422650Z ** building package indices 2021-05-19T20:44:50.8436647Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:51.0383056Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:51.0630477Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:51.2538293Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:51.2556092Z * DONE (processx) 2021-05-19T20:44:51.5072714Z * installing *source* package ‘markdown’ ... 2021-05-19T20:44:51.5097232Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:51.5098425Z ** using staged installation 2021-05-19T20:44:51.5248236Z ** libs 2021-05-19T20:44:51.5298023Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-19T20:44:51.5864574Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-19T20:44:51.6352506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-19T20:44:51.7832364Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-19T20:44:51.8851898Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-19T20:44:51.9569072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-19T20:44:51.9928861Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-19T20:44:52.0285667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-19T20:44:52.2131234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-19T20:44:52.3322173Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-19T20:44:53.2485245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-19T20:44:53.2949710Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:44:53.3217573Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-19T20:44:53.3218901Z ** R 2021-05-19T20:44:53.3262081Z ** inst 2021-05-19T20:44:53.3278702Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:53.7069216Z ** help 2021-05-19T20:44:53.7430103Z *** installing help indices 2021-05-19T20:44:53.7692298Z ** building package indices 2021-05-19T20:44:53.9464574Z ** installing vignettes 2021-05-19T20:44:53.9518921Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:54.1294590Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:44:54.1463127Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:54.3051065Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:54.3061592Z * DONE (markdown) 2021-05-19T20:44:54.5051958Z * installing *source* package ‘highr’ ... 2021-05-19T20:44:54.5062343Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:54.5063310Z ** using staged installation 2021-05-19T20:44:54.5208854Z ** R 2021-05-19T20:44:54.5243861Z ** inst 2021-05-19T20:44:54.5253704Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:54.8256292Z ** help 2021-05-19T20:44:54.8346882Z *** installing help indices 2021-05-19T20:44:54.8499949Z ** building package indices 2021-05-19T20:44:55.0345646Z ** installing vignettes 2021-05-19T20:44:55.0391027Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:55.2131741Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:55.3884561Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:55.3890434Z * DONE (highr) 2021-05-19T20:44:55.6359822Z * installing *source* package ‘stringr’ ... 2021-05-19T20:44:55.6388690Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:55.6389711Z ** using staged installation 2021-05-19T20:44:55.6542640Z ** R 2021-05-19T20:44:55.6609606Z ** data 2021-05-19T20:44:55.6612927Z *** moving datasets to lazyload DB 2021-05-19T20:44:55.6764676Z ** inst 2021-05-19T20:44:55.6776718Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:56.1680012Z ** help 2021-05-19T20:44:56.2360513Z *** installing help indices 2021-05-19T20:44:56.2858801Z *** copying figures 2021-05-19T20:44:56.2861082Z ** building package indices 2021-05-19T20:44:56.5168755Z ** installing vignettes 2021-05-19T20:44:56.5222030Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:56.6887660Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:56.8781118Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:56.8789705Z * DONE (stringr) 2021-05-19T20:44:57.0722356Z * installing *source* package ‘rversions’ ... 2021-05-19T20:44:57.0731974Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:57.0732891Z ** using staged installation 2021-05-19T20:44:57.0857862Z ** R 2021-05-19T20:44:57.0889001Z ** inst 2021-05-19T20:44:57.0953111Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:57.4016375Z ** help 2021-05-19T20:44:57.4173829Z *** installing help indices 2021-05-19T20:44:57.4355223Z *** copying figures 2021-05-19T20:44:57.4358100Z ** building package indices 2021-05-19T20:44:57.6081575Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:44:57.8050456Z ** testing if installed package can be loaded from final location 2021-05-19T20:44:57.9834508Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:44:57.9840395Z * DONE (rversions) 2021-05-19T20:44:58.3831518Z * installing *source* package ‘pillar’ ... 2021-05-19T20:44:58.3930919Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-19T20:44:58.3932853Z ** using staged installation 2021-05-19T20:44:58.4110074Z ** R 2021-05-19T20:44:58.4280827Z ** inst 2021-05-19T20:44:58.4314165Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:44:59.9935967Z ** help 2021-05-19T20:45:00.0751163Z *** installing help indices 2021-05-19T20:45:00.1358621Z *** copying figures 2021-05-19T20:45:00.1362849Z ** building package indices 2021-05-19T20:45:00.3467757Z ** installing vignettes 2021-05-19T20:45:00.3549067Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:00.6345718Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:00.9138587Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:00.9161857Z * DONE (pillar) 2021-05-19T20:45:01.1504284Z * installing *source* package ‘callr’ ... 2021-05-19T20:45:01.1529144Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:01.1530341Z ** using staged installation 2021-05-19T20:45:01.1650030Z ** R 2021-05-19T20:45:01.1767303Z ** inst 2021-05-19T20:45:01.1773537Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:04.3853179Z ** help 2021-05-19T20:45:04.4907873Z *** installing help indices 2021-05-19T20:45:04.5538435Z ** building package indices 2021-05-19T20:45:04.7991765Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:04.9777733Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:05.2312018Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:05.2340080Z * DONE (callr) 2021-05-19T20:45:05.6861867Z * installing *source* package ‘knitr’ ... 2021-05-19T20:45:05.6971997Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:05.6972772Z ** using staged installation 2021-05-19T20:45:05.7307240Z ** R 2021-05-19T20:45:05.7672326Z ** demo 2021-05-19T20:45:05.7677980Z ** inst 2021-05-19T20:45:05.7777512Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:09.6060351Z ** help 2021-05-19T20:45:09.7754296Z *** installing help indices 2021-05-19T20:45:09.8889527Z ** building package indices 2021-05-19T20:45:10.1479091Z ** installing vignettes 2021-05-19T20:45:10.1557125Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:10.3299255Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:10.5886143Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:10.5939809Z * DONE (knitr) 2021-05-19T20:45:10.7812592Z * installing *source* package ‘xopen’ ... 2021-05-19T20:45:10.7819926Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:10.7821132Z ** using staged installation 2021-05-19T20:45:10.7947340Z ** R 2021-05-19T20:45:10.7968916Z ** inst 2021-05-19T20:45:10.7975148Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:11.0082822Z ** help 2021-05-19T20:45:11.0185875Z *** installing help indices 2021-05-19T20:45:11.0386583Z ** building package indices 2021-05-19T20:45:11.2061030Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:11.3619840Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:11.5141481Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:11.5145822Z * DONE (xopen) 2021-05-19T20:45:11.8786232Z * installing *source* package ‘tibble’ ... 2021-05-19T20:45:11.8871339Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:11.8872440Z ** using staged installation 2021-05-19T20:45:11.9050983Z ** libs 2021-05-19T20:45:11.9095940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-19T20:45:11.9497758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-19T20:45:12.0080410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:45:12.0421200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-19T20:45:12.1280285Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:45:12.1497991Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-19T20:45:12.1499301Z ** R 2021-05-19T20:45:12.1633040Z ** inst 2021-05-19T20:45:12.1659762Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:13.8143243Z ** help 2021-05-19T20:45:13.8858675Z *** installing help indices 2021-05-19T20:45:13.9356089Z *** copying figures 2021-05-19T20:45:13.9361226Z ** building package indices 2021-05-19T20:45:14.1399715Z ** installing vignettes 2021-05-19T20:45:14.1477848Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:14.4844529Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:45:14.5011722Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:14.8639419Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:14.8663532Z * DONE (tibble) 2021-05-19T20:45:15.0868353Z * installing *source* package ‘pkgbuild’ ... 2021-05-19T20:45:15.0886059Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:15.0887269Z ** using staged installation 2021-05-19T20:45:15.1015917Z ** R 2021-05-19T20:45:15.1084999Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:16.2833234Z ** help 2021-05-19T20:45:16.3149493Z *** installing help indices 2021-05-19T20:45:16.3461428Z ** building package indices 2021-05-19T20:45:16.5503543Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:16.7760522Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:17.0160496Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:17.0173322Z * DONE (pkgbuild) 2021-05-19T20:45:17.3915163Z * installing *source* package ‘roxygen2’ ... 2021-05-19T20:45:17.3987427Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:17.3988530Z ** using staged installation 2021-05-19T20:45:17.4174766Z ** libs 2021-05-19T20:45:17.4226304Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-19T20:45:21.3722658Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-19T20:45:24.2420088Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-19T20:45:27.1398835Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-19T20:45:30.0420222Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-19T20:45:34.6280480Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-19T20:45:37.6678039Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:45:37.7629362Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-19T20:45:37.7684339Z ** R 2021-05-19T20:45:37.8092875Z ** inst 2021-05-19T20:45:37.8119119Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:41.5981353Z ** help 2021-05-19T20:45:41.6688442Z *** installing help indices 2021-05-19T20:45:41.7202943Z *** copying figures 2021-05-19T20:45:41.7205373Z ** building package indices 2021-05-19T20:45:41.9488048Z ** installing vignettes 2021-05-19T20:45:41.9588127Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:42.3042290Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:45:42.3235651Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:42.7453501Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:42.7497542Z * DONE (roxygen2) 2021-05-19T20:45:42.9681585Z * installing *source* package ‘rematch2’ ... 2021-05-19T20:45:42.9693778Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:42.9696153Z ** using staged installation 2021-05-19T20:45:42.9830033Z ** R 2021-05-19T20:45:42.9871529Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:43.4662664Z ** help 2021-05-19T20:45:43.4951592Z *** installing help indices 2021-05-19T20:45:43.5160206Z ** building package indices 2021-05-19T20:45:43.7108355Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:44.0483486Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:44.3865801Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:44.3872260Z * DONE (rematch2) 2021-05-19T20:45:44.6389168Z * installing *source* package ‘rcmdcheck’ ... 2021-05-19T20:45:44.6412546Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:44.6413730Z ** using staged installation 2021-05-19T20:45:44.6544518Z ** R 2021-05-19T20:45:44.6618829Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:45.8458184Z ** help 2021-05-19T20:45:45.8804539Z *** installing help indices 2021-05-19T20:45:45.9088914Z ** building package indices 2021-05-19T20:45:46.1125295Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:46.3889947Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:46.6760060Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:46.6774781Z * DONE (rcmdcheck) 2021-05-19T20:45:46.9189549Z * installing *source* package ‘waldo’ ... 2021-05-19T20:45:46.9208024Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:46.9209183Z ** using staged installation 2021-05-19T20:45:46.9346228Z ** R 2021-05-19T20:45:46.9402464Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:45:47.5593001Z ** help 2021-05-19T20:45:47.5737822Z *** installing help indices 2021-05-19T20:45:47.5915075Z *** copying figures 2021-05-19T20:45:47.5917427Z ** building package indices 2021-05-19T20:45:47.7833013Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:45:48.0058780Z ** testing if installed package can be loaded from final location 2021-05-19T20:45:48.2531020Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:45:48.2540833Z * DONE (waldo) 2021-05-19T20:45:48.7505584Z * installing *source* package ‘testthat’ ... 2021-05-19T20:45:48.7626699Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-19T20:45:48.7629149Z ** using staged installation 2021-05-19T20:45:48.7842047Z ** libs 2021-05-19T20:45:48.7891014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:45:48.8303850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-19T20:45:48.8801529Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-19T20:45:49.6284464Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-19T20:45:50.2111872Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-19T20:46:04.9939396Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:46:05.1414858Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-19T20:46:05.1512082Z ** R 2021-05-19T20:46:05.1813426Z ** inst 2021-05-19T20:46:05.1843357Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:14.9910231Z ** help 2021-05-19T20:46:15.1819462Z *** installing help indices 2021-05-19T20:46:15.3448204Z *** copying figures 2021-05-19T20:46:15.3452418Z ** building package indices 2021-05-19T20:46:15.6620954Z ** installing vignettes 2021-05-19T20:46:15.6732391Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:15.8810872Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:46:15.9027605Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:16.3416686Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:16.3498821Z * DONE (testthat) 2021-05-19T20:46:16.7077661Z * installing *source* package ‘devtools’ ... 2021-05-19T20:46:16.7133264Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:16.7134541Z ** using staged installation 2021-05-19T20:46:16.7421267Z ** R 2021-05-19T20:46:16.7552244Z ** inst 2021-05-19T20:46:16.7562081Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:18.3338330Z ** help 2021-05-19T20:46:18.4427843Z *** installing help indices 2021-05-19T20:46:18.5176928Z *** copying figures 2021-05-19T20:46:18.5178608Z ** building package indices 2021-05-19T20:46:18.7456368Z ** installing vignettes 2021-05-19T20:46:18.7556432Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:19.4253680Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:20.1266850Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:20.1285477Z * DONE (devtools) 2021-05-19T20:46:20.1388371Z 2021-05-19T20:46:20.1389477Z The downloaded source packages are in 2021-05-19T20:46:20.2345827Z ‘/tmp/RtmplHpZht/downloaded_packages’ 2021-05-19T20:46:20.2347094Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-19T20:46:21.1134742Z 2021-05-19T20:46:21.3770481Z 2021-05-19T20:46:21.3773958Z checking for file ‘/tmp/RtmplHpZht/remotes6f2f40dfba3b/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-19T20:46:21.3827632Z 2021-05-19T20:46:21.3830534Z ✔ checking for file ‘/tmp/RtmplHpZht/remotes6f2f40dfba3b/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-19T20:46:21.3858732Z 2021-05-19T20:46:21.3880581Z 2021-05-19T20:46:21.3882407Z ─ preparing ‘desc’: 2021-05-19T20:46:21.3889996Z 2021-05-19T20:46:21.3891837Z 2021-05-19T20:46:21.3971773Z checking DESCRIPTION meta-information ... 2021-05-19T20:46:21.3994404Z 2021-05-19T20:46:21.3996394Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:46:21.4563186Z 2021-05-19T20:46:21.4693620Z 2021-05-19T20:46:21.4696395Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:46:21.4705250Z 2021-05-19T20:46:21.4724615Z 2021-05-19T20:46:21.4726624Z ─ checking for empty or unneeded directories 2021-05-19T20:46:21.4729423Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:46:21.4750191Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-19T20:46:21.5586629Z 2021-05-19T20:46:21.5589865Z 2021-05-19T20:46:21.5591383Z 2021-05-19T20:46:21.5688106Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:46:21.5688912Z (as ‘lib’ is unspecified) 2021-05-19T20:46:21.8349121Z * installing *source* package ‘desc’ ... 2021-05-19T20:46:21.8379633Z ** using staged installation 2021-05-19T20:46:21.8547135Z ** R 2021-05-19T20:46:21.8674261Z ** inst 2021-05-19T20:46:21.8689960Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:23.2449667Z ** help 2021-05-19T20:46:23.3712706Z *** installing help indices 2021-05-19T20:46:23.4601427Z ** building package indices 2021-05-19T20:46:23.7048042Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:23.8861049Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:24.0933791Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:24.0948274Z * DONE (desc) 2021-05-19T20:46:24.2856595Z 2021-05-19T20:46:24.2865016Z 2021-05-19T20:46:24.2875843Z checking for file ‘/tmp/RtmplHpZht/remotes6f2f5da1e7f1/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-19T20:46:24.2892338Z 2021-05-19T20:46:24.2893962Z ✔ checking for file ‘/tmp/RtmplHpZht/remotes6f2f5da1e7f1/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-19T20:46:24.2987134Z 2021-05-19T20:46:24.2987800Z 2021-05-19T20:46:24.2988635Z ─ preparing ‘ghtravis’: 2021-05-19T20:46:24.2989013Z 2021-05-19T20:46:24.2989367Z 2021-05-19T20:46:24.3071160Z checking DESCRIPTION meta-information ... 2021-05-19T20:46:24.3089644Z 2021-05-19T20:46:24.3091399Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:46:24.3457810Z 2021-05-19T20:46:24.3482307Z 2021-05-19T20:46:24.3484988Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:46:24.3493810Z 2021-05-19T20:46:24.3515253Z 2021-05-19T20:46:24.3517430Z ─ checking for empty or unneeded directories 2021-05-19T20:46:24.3520415Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:46:24.3602549Z 2021-05-19T20:46:24.3620951Z 2021-05-19T20:46:24.3622651Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-19T20:46:24.3827067Z 2021-05-19T20:46:24.3829455Z 2021-05-19T20:46:24.3830876Z 2021-05-19T20:46:24.4113798Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:46:24.4114982Z (as ‘lib’ is unspecified) 2021-05-19T20:46:24.6458444Z * installing *source* package ‘ghtravis’ ... 2021-05-19T20:46:24.6460676Z ** using staged installation 2021-05-19T20:46:24.6606120Z ** R 2021-05-19T20:46:24.6690699Z ** inst 2021-05-19T20:46:24.6699705Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:25.7976371Z ** help 2021-05-19T20:46:25.8466097Z *** installing help indices 2021-05-19T20:46:25.8893867Z ** building package indices 2021-05-19T20:46:26.0992929Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:26.7764382Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:27.3853531Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:27.3862471Z * DONE (ghtravis) 2021-05-19T20:46:27.3945881Z Using github PAT from envvar GITHUB_PAT 2021-05-19T20:46:27.5758878Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-19T20:46:28.5077518Z 2021-05-19T20:46:28.5079518Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-19T20:46:28.5081427Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-19T20:46:28.5082380Z generics (NA -> 0.1.0) [CRAN] 2021-05-19T20:46:28.5083525Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-19T20:46:28.5084344Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-19T20:46:28.5085145Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-19T20:46:28.5086960Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:46:28.5087948Z (as ‘lib’ is unspecified) 2021-05-19T20:46:41.0329675Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-19T20:46:41.5383184Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-19T20:46:41.5433978Z ================================================== 2021-05-19T20:46:41.5434523Z downloaded 89 KB 2021-05-19T20:46:41.5434814Z 2021-05-19T20:46:41.5474964Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-19T20:46:42.0531998Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-19T20:46:42.0581958Z ================================================== 2021-05-19T20:46:42.0582509Z downloaded 116 KB 2021-05-19T20:46:42.0582801Z 2021-05-19T20:46:42.0622032Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-19T20:46:42.6261381Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-19T20:46:42.6397648Z ================================================== 2021-05-19T20:46:42.6398101Z downloaded 195 KB 2021-05-19T20:46:42.6398383Z 2021-05-19T20:46:42.6436661Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-19T20:46:43.2987101Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-19T20:46:43.3731579Z ================================================== 2021-05-19T20:46:43.3732665Z downloaded 932 KB 2021-05-19T20:46:43.3733207Z 2021-05-19T20:46:43.3767269Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-19T20:46:43.8823199Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-19T20:46:43.9075883Z ================================================== 2021-05-19T20:46:43.9076420Z downloaded 690 KB 2021-05-19T20:46:43.9078017Z 2021-05-19T20:46:44.1455194Z * installing *source* package ‘tidyselect’ ... 2021-05-19T20:46:44.1482633Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:44.1483802Z ** using staged installation 2021-05-19T20:46:44.1624742Z ** R 2021-05-19T20:46:44.1701825Z ** inst 2021-05-19T20:46:44.1713568Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:45.1200918Z ** help 2021-05-19T20:46:45.1757669Z *** installing help indices 2021-05-19T20:46:45.2172083Z ** building package indices 2021-05-19T20:46:45.4296258Z ** installing vignettes 2021-05-19T20:46:45.4353476Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:45.7021677Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:45.9634425Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:45.9645758Z * DONE (tidyselect) 2021-05-19T20:46:46.2374115Z * installing *source* package ‘generics’ ... 2021-05-19T20:46:46.2407410Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:46.2408866Z ** using staged installation 2021-05-19T20:46:46.2544257Z ** R 2021-05-19T20:46:46.2598970Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:46.5656403Z ** help 2021-05-19T20:46:46.6776786Z *** installing help indices 2021-05-19T20:46:46.7222465Z ** building package indices 2021-05-19T20:46:46.9520981Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:47.1305750Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:47.3083508Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:47.3089318Z * DONE (generics) 2021-05-19T20:46:47.5748614Z * installing *source* package ‘cpp11’ ... 2021-05-19T20:46:47.5783441Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:47.5784836Z ** using staged installation 2021-05-19T20:46:47.5941327Z ** R 2021-05-19T20:46:47.5983995Z ** inst 2021-05-19T20:46:47.6014204Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:47.9938473Z ** help 2021-05-19T20:46:48.0147926Z *** installing help indices 2021-05-19T20:46:48.0329969Z ** building package indices 2021-05-19T20:46:48.2324589Z ** installing vignettes 2021-05-19T20:46:48.2325421Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:48.4124400Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:48.5938213Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:48.5948341Z * DONE (cpp11) 2021-05-19T20:46:49.0866771Z * installing *source* package ‘dplyr’ ... 2021-05-19T20:46:49.0993009Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:49.0994285Z ** using staged installation 2021-05-19T20:46:49.1208261Z ** libs 2021-05-19T20:46:49.1256817Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-19T20:46:49.2600521Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-19T20:46:49.4214900Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-19T20:46:49.5455266Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-19T20:46:50.0689333Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-19T20:46:50.1711001Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-19T20:46:50.2685374Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-19T20:46:50.3773508Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-19T20:46:50.5020122Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-19T20:46:50.6213468Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-19T20:46:50.7125913Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-19T20:46:50.8711001Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:46:50.9377465Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-19T20:46:50.9425025Z ** R 2021-05-19T20:46:51.9559807Z ** data 2021-05-19T20:46:51.9561041Z *** moving datasets to lazyload DB 2021-05-19T20:46:51.9561618Z ** inst 2021-05-19T20:46:51.9563162Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:46:55.5048536Z ** help 2021-05-19T20:46:55.9967329Z *** installing help indices 2021-05-19T20:46:56.2358761Z *** copying figures 2021-05-19T20:46:56.2364034Z ** building package indices 2021-05-19T20:46:56.5936444Z ** installing vignettes 2021-05-19T20:46:56.6051749Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:46:57.0664618Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:46:57.0845781Z ** testing if installed package can be loaded from final location 2021-05-19T20:46:57.6316804Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:46:57.6364493Z * DONE (dplyr) 2021-05-19T20:46:57.9992793Z * installing *source* package ‘tidyr’ ... 2021-05-19T20:46:58.0068371Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-19T20:46:58.0069432Z ** using staged installation 2021-05-19T20:46:58.0251408Z ** libs 2021-05-19T20:46:58.0315488Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-19T20:46:58.9739732Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-19T20:46:59.2967215Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-19T20:47:00.9148916Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-19T20:47:02.1387304Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:47:02.2057634Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-19T20:47:02.2079158Z ** R 2021-05-19T20:47:02.2217177Z ** data 2021-05-19T20:47:02.2227625Z *** moving datasets to lazyload DB 2021-05-19T20:47:02.3847974Z ** inst 2021-05-19T20:47:02.3868624Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:04.1017179Z ** help 2021-05-19T20:47:04.2181110Z *** installing help indices 2021-05-19T20:47:04.2938843Z *** copying figures 2021-05-19T20:47:04.2944589Z ** building package indices 2021-05-19T20:47:04.5447418Z ** installing vignettes 2021-05-19T20:47:04.5561697Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:05.0311399Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:47:05.0495128Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:05.5325336Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:05.5344781Z * DONE (tidyr) 2021-05-19T20:47:05.5498446Z 2021-05-19T20:47:05.5501206Z The downloaded source packages are in 2021-05-19T20:47:05.5502419Z ‘/tmp/RtmplHpZht/downloaded_packages’ 2021-05-19T20:47:05.7269769Z 2021-05-19T20:47:05.7278792Z checking for file ‘/tmp/RtmplHpZht/remotes6f2fcbc006f/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-19T20:47:05.7279976Z 2021-05-19T20:47:05.7287091Z checking for file ‘/tmp/RtmplHpZht/remotes6f2fcbc006f/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-19T20:47:05.7287985Z 2021-05-19T20:47:05.7290418Z checking for file ‘/tmp/RtmplHpZht/remotes6f2fcbc006f/muschellij2-aghast-0c3b853/DESCRIPTION’ ... OK 2021-05-19T20:47:05.7312346Z 2021-05-19T20:47:05.7313737Z ✔ checking for file ‘/tmp/RtmplHpZht/remotes6f2fcbc006f/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-19T20:47:05.7401719Z 2021-05-19T20:47:05.7402272Z 2021-05-19T20:47:05.7403138Z ─ preparing ‘aghast’: 2021-05-19T20:47:05.7403430Z 2021-05-19T20:47:05.7403718Z 2021-05-19T20:47:05.7485085Z checking DESCRIPTION meta-information ... 2021-05-19T20:47:05.7503999Z 2021-05-19T20:47:05.7505141Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:47:05.7754288Z 2021-05-19T20:47:05.7777035Z 2021-05-19T20:47:05.7778842Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:47:05.7785444Z 2021-05-19T20:47:05.7806268Z 2021-05-19T20:47:05.7807851Z ─ checking for empty or unneeded directories 2021-05-19T20:47:05.7809369Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:47:05.7845724Z 2021-05-19T20:47:05.7864243Z 2021-05-19T20:47:05.7865576Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-19T20:47:05.7960791Z 2021-05-19T20:47:05.7962605Z 2021-05-19T20:47:05.7963440Z 2021-05-19T20:47:05.8039134Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:47:05.8040306Z (as ‘lib’ is unspecified) 2021-05-19T20:47:06.0059060Z * installing *source* package ‘aghast’ ... 2021-05-19T20:47:06.0061908Z ** using staged installation 2021-05-19T20:47:06.0219367Z ** R 2021-05-19T20:47:06.0273876Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:06.4554287Z ** help 2021-05-19T20:47:06.4849650Z *** installing help indices 2021-05-19T20:47:06.5070652Z ** building package indices 2021-05-19T20:47:06.7022746Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:06.8755795Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:07.0514599Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:07.0521686Z * DONE (aghast) 2021-05-19T20:47:07.0604375Z Installing 1 packages: covr 2021-05-19T20:47:07.0612270Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:47:07.0613242Z (as ‘lib’ is unspecified) 2021-05-19T20:47:20.5601943Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-19T20:47:20.5602452Z 2021-05-19T20:47:20.5610254Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-19T20:47:20.9440710Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-19T20:47:20.9499644Z ================================================== 2021-05-19T20:47:20.9500519Z downloaded 81 KB 2021-05-19T20:47:20.9501044Z 2021-05-19T20:47:20.9532709Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-19T20:47:21.4123331Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-19T20:47:21.4194890Z ================================================== 2021-05-19T20:47:21.4195827Z downloaded 89 KB 2021-05-19T20:47:21.4196360Z 2021-05-19T20:47:21.4228590Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-19T20:47:21.8674240Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-19T20:47:21.8787794Z ================================================== 2021-05-19T20:47:21.8788313Z downloaded 144 KB 2021-05-19T20:47:21.8788690Z 2021-05-19T20:47:22.1093172Z * installing *source* package ‘lazyeval’ ... 2021-05-19T20:47:22.1116894Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-19T20:47:22.1118077Z ** using staged installation 2021-05-19T20:47:22.1229125Z ** libs 2021-05-19T20:47:22.1272638Z 2021-05-19T20:47:22.1274048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-19T20:47:22.1864846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:47:22.2206197Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-19T20:47:22.2727327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-19T20:47:22.3453340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-19T20:47:22.4052648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:47:22.4738548Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:47:22.4969336Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-19T20:47:22.4983133Z ** R 2021-05-19T20:47:22.5045383Z ** inst 2021-05-19T20:47:22.5057389Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:23.4647188Z ** help 2021-05-19T20:47:23.4653404Z *** installing help indices 2021-05-19T20:47:23.4654429Z ** building package indices 2021-05-19T20:47:23.4654869Z ** installing vignettes 2021-05-19T20:47:23.4655741Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:23.4656446Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:47:23.4740318Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:23.6388758Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:23.6389598Z * DONE (lazyeval) 2021-05-19T20:47:23.8625617Z * installing *source* package ‘rex’ ... 2021-05-19T20:47:23.8647058Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-19T20:47:23.8648236Z ** using staged installation 2021-05-19T20:47:23.8769448Z ** R 2021-05-19T20:47:23.8817751Z ** inst 2021-05-19T20:47:23.8827393Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:24.3683519Z ** help 2021-05-19T20:47:24.4140487Z *** installing help indices 2021-05-19T20:47:24.4476701Z ** building package indices 2021-05-19T20:47:24.6616491Z ** installing vignettes 2021-05-19T20:47:24.6684633Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:24.8336708Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:24.9961650Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:24.9970344Z * DONE (rex) 2021-05-19T20:47:25.3152816Z * installing *source* package ‘covr’ ... 2021-05-19T20:47:25.3205183Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-19T20:47:25.3206554Z ** using staged installation 2021-05-19T20:47:25.3393607Z ** libs 2021-05-19T20:47:25.3439048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-19T20:47:25.3977134Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:47:25.4110528Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-19T20:47:25.4122612Z ** R 2021-05-19T20:47:25.4243222Z ** inst 2021-05-19T20:47:25.4263538Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:47:26.6056343Z ** help 2021-05-19T20:47:26.6610242Z *** installing help indices 2021-05-19T20:47:26.7084928Z *** copying figures 2021-05-19T20:47:26.7086374Z ** building package indices 2021-05-19T20:47:26.9136329Z ** installing vignettes 2021-05-19T20:47:26.9193128Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:47:27.1144855Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:47:27.1311797Z ** testing if installed package can be loaded from final location 2021-05-19T20:47:27.3323128Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:47:27.3340414Z * DONE (covr) 2021-05-19T20:47:27.3430002Z 2021-05-19T20:47:27.3430974Z The downloaded source packages are in 2021-05-19T20:47:27.3432210Z ‘/tmp/RtmplHpZht/downloaded_packages’ 2021-05-19T20:47:27.3558631Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-19T20:47:27.3559265Z remotes::install_deps(dependencies = TRUE) 2021-05-19T20:47:27.3559780Z remotes::install_cran("rcmdcheck") 2021-05-19T20:47:27.3560283Z remotes::install_cran("markdown") 2021-05-19T20:47:27.3566585Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:47:27.3566932Z env: 2021-05-19T20:47:27.3567304Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:47:27.3567680Z TIC_DEPLOY_KEY: 2021-05-19T20:47:27.3568342Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:47:27.3569662Z GITHUB_PAT: *** 2021-05-19T20:47:27.3570367Z COVERALLS_TOKEN: *** 2021-05-19T20:47:27.3570773Z continue-on-error: true 2021-05-19T20:47:27.3571158Z VDIFFR_RUN_TESTS: 2021-05-19T20:47:27.3571541Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:47:27.3571912Z TZ: UTC 2021-05-19T20:47:27.3572225Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:47:27.3572593Z NOT_CRAN: true 2021-05-19T20:47:27.3572911Z ##[endgroup] 2021-05-19T20:47:45.3800960Z tractor.base (NA -> 6f92c97af...) [GitHub] 2021-05-19T20:47:45.3801780Z dcm2niir (NA -> cd9c14f52...) [GitHub] 2021-05-19T20:47:45.3802460Z dcmtk (NA -> 491cbcea6...) [GitHub] 2021-05-19T20:47:45.3803112Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-19T20:47:45.3804113Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-19T20:47:45.3804752Z fslr (NA -> 2836c3181...) [GitHub] 2021-05-19T20:47:45.3805350Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-19T20:47:45.3805941Z ore (NA -> 1.6.3 ) [CRAN] 2021-05-19T20:47:45.3806541Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-19T20:47:45.3807129Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-19T20:47:45.3807721Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-19T20:47:45.3808298Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-19T20:47:45.3808884Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-19T20:47:45.3809462Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-19T20:47:45.3810004Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-19T20:47:45.3810534Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-19T20:47:45.3811060Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-19T20:47:45.3811593Z shades (NA -> 1.4.0 ) [CRAN] 2021-05-19T20:47:45.3812124Z reportr (NA -> 1.3.0 ) [CRAN] 2021-05-19T20:47:45.3812650Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-19T20:47:45.6988462Z Downloading GitHub repo jonclayden/tractor@HEAD 2021-05-19T20:47:49.5016459Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/reportr.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/reportr 2021-05-19T20:47:49.5038187Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/reportr'... 2021-05-19T20:47:49.7578649Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/mmand.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/mmand 2021-05-19T20:47:49.7599387Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/mmand'... 2021-05-19T20:47:50.2008167Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNiftyReg.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg 2021-05-19T20:47:50.2029254Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg'... 2021-05-19T20:47:50.6559153Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/corpcor.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/corpcor 2021-05-19T20:47:50.6576453Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/corpcor'... 2021-05-19T20:47:50.9447022Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/Rcpp.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp 2021-05-19T20:47:50.9463501Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp'... 2021-05-19T20:47:51.4742640Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/ore.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/ore 2021-05-19T20:47:51.4762889Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/ore'... 2021-05-19T20:47:51.9201184Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/RcppEigen.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen 2021-05-19T20:47:51.9222488Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen'... 2021-05-19T20:47:52.6993826Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNifti.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RNifti 2021-05-19T20:47:52.7011527Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/RNifti'... 2021-05-19T20:47:53.0674540Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/divest.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/divest 2021-05-19T20:47:53.0696701Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/divest'... 2021-05-19T20:47:53.3838906Z Submodule 'dcm_qa' (https://github.com/neurolabusc/dcm_qa.git) registered for path 'tests/dcm_qa' 2021-05-19T20:47:53.3842264Z Submodule 'dcm_qa_nih' (https://github.com/neurolabusc/dcm_qa_nih.git) registered for path 'tests/dcm_qa_nih' 2021-05-19T20:47:53.3844095Z Submodule 'tests/dcm_qa_stc' (https://github.com/neurolabusc/dcm_qa_stc.git) registered for path 'tests/dcm_qa_stc' 2021-05-19T20:47:53.3845841Z Submodule 'tests/testthat/dcm_qa_uih' (https://github.com/neurolabusc/dcm_qa_uih.git) registered for path 'tests/dcm_qa_uih' 2021-05-19T20:47:53.3890537Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa'... 2021-05-19T20:47:55.8949225Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_nih'... 2021-05-19T20:47:56.3398625Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_stc'... 2021-05-19T20:47:59.8809961Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_uih'... 2021-05-19T20:48:08.9201370Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/yaml.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/yaml 2021-05-19T20:48:08.9223298Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/yaml'... 2021-05-19T20:48:09.5890675Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/loder.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/loder 2021-05-19T20:48:09.5907584Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/loder'... 2021-05-19T20:48:09.8678929Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/shades.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/shades 2021-05-19T20:48:09.8700929Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/shades'... 2021-05-19T20:48:10.1370093Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/jsonlite.git /tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite 2021-05-19T20:48:10.1391878Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite'... 2021-05-19T20:48:24.6343107Z ore (NA -> 1.6.3) [CRAN] 2021-05-19T20:48:24.6344539Z RNifti (NA -> 1.3.1) [CRAN] 2021-05-19T20:48:24.6345484Z shades (NA -> 1.4.0) [CRAN] 2021-05-19T20:48:24.6346401Z reportr (NA -> 1.3.0) [CRAN] 2021-05-19T20:48:24.6366077Z Installing 4 packages: ore, RNifti, shades, reportr 2021-05-19T20:48:24.6379390Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:48:24.6380538Z (as ‘lib’ is unspecified) 2021-05-19T20:48:38.3647991Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ore_1.6.3.tar.gz' 2021-05-19T20:48:38.8708716Z Content type 'application/x-tar' length 428565 bytes (418 KB) 2021-05-19T20:48:38.8913390Z ================================================== 2021-05-19T20:48:38.8914511Z downloaded 418 KB 2021-05-19T20:48:38.8915067Z 2021-05-19T20:48:38.8949283Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:48:39.1506253Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:48:39.1510490Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:48:39.1513485Z In addition: Warning message: 2021-05-19T20:48:39.1521454Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:48:39.1523527Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-19T20:48:39.1525177Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-19T20:48:39.1526226Z download of package ‘RNifti’ failed 2021-05-19T20:48:39.1527664Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/shades_1.4.0.tar.gz' 2021-05-19T20:48:39.4931373Z Content type 'application/x-tar' length 46488 bytes (45 KB) 2021-05-19T20:48:39.4932156Z ================================================== 2021-05-19T20:48:39.4932606Z downloaded 45 KB 2021-05-19T20:48:39.4932906Z 2021-05-19T20:48:39.4973288Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/reportr_1.3.0.tar.gz' 2021-05-19T20:48:40.1520812Z Content type 'application/x-tar' length 11298 bytes (11 KB) 2021-05-19T20:48:40.1522285Z ================================================== 2021-05-19T20:48:40.1522980Z downloaded 11 KB 2021-05-19T20:48:40.1523499Z 2021-05-19T20:48:40.5015181Z * installing *source* package ‘ore’ ... 2021-05-19T20:48:40.5091106Z ** package ‘ore’ successfully unpacked and MD5 sums checked 2021-05-19T20:48:40.5092346Z ** using staged installation 2021-05-19T20:48:40.6263799Z checking for gcc... gcc 2021-05-19T20:48:40.6838443Z checking whether the C compiler works... yes 2021-05-19T20:48:40.6839887Z checking for C compiler default output file name... a.out 2021-05-19T20:48:40.7199317Z checking for suffix of executables... 2021-05-19T20:48:40.7603254Z checking whether we are cross compiling... no 2021-05-19T20:48:40.8214673Z checking for suffix of object files... o 2021-05-19T20:48:40.8786487Z checking whether we are using the GNU C compiler... yes 2021-05-19T20:48:40.9774947Z checking whether gcc accepts -g... yes 2021-05-19T20:48:41.1205325Z checking for gcc option to accept ISO C89... none needed 2021-05-19T20:48:41.4807174Z checking how to run the C preprocessor... gcc -E 2021-05-19T20:48:41.6297459Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-19T20:48:41.6316865Z checking for egrep... /usr/bin/grep -E 2021-05-19T20:48:41.8400043Z checking for ANSI C header files... yes 2021-05-19T20:48:41.8681196Z checking for sys/types.h... yes 2021-05-19T20:48:41.9004301Z checking for sys/stat.h... yes 2021-05-19T20:48:41.9326769Z checking for stdlib.h... yes 2021-05-19T20:48:41.9662046Z checking for string.h... yes 2021-05-19T20:48:41.9996328Z checking for memory.h... yes 2021-05-19T20:48:42.0342572Z checking for strings.h... yes 2021-05-19T20:48:42.0692484Z checking for inttypes.h... yes 2021-05-19T20:48:42.1040248Z checking for stdint.h... yes 2021-05-19T20:48:42.1422510Z checking for unistd.h... yes 2021-05-19T20:48:42.1810398Z checking sys/time.h usability... yes 2021-05-19T20:48:42.1894139Z checking sys/time.h presence... yes 2021-05-19T20:48:42.1895101Z checking for sys/time.h... yes 2021-05-19T20:48:42.1963013Z checking for unistd.h... (cached) yes 2021-05-19T20:48:42.2343103Z checking sys/times.h usability... yes 2021-05-19T20:48:42.2430525Z checking sys/times.h presence... yes 2021-05-19T20:48:42.2431154Z checking for sys/times.h... yes 2021-05-19T20:48:42.2495055Z checking for stdint.h... (cached) yes 2021-05-19T20:48:42.3142671Z checking size of int... 4 2021-05-19T20:48:42.3772432Z checking size of short... 2 2021-05-19T20:48:42.4398812Z checking size of long... 8 2021-05-19T20:48:42.5024676Z checking size of void*... 8 2021-05-19T20:48:42.5645744Z checking size of long long... 8 2021-05-19T20:48:42.5889803Z checking for an ANSI C-conforming const... yes 2021-05-19T20:48:42.6153548Z checking whether time.h and sys/time.h may both be included... yes 2021-05-19T20:48:42.6854647Z checking for size_t... yes 2021-05-19T20:48:42.7252631Z checking for working alloca.h... yes 2021-05-19T20:48:42.7637452Z checking for alloca... yes 2021-05-19T20:48:42.8255545Z checking for working memcmp... yes 2021-05-19T20:48:42.8429737Z configure: creating ./config.status 2021-05-19T20:48:42.8932616Z config.status: creating src/onig/config.h 2021-05-19T20:48:42.9345112Z ** libs 2021-05-19T20:48:42.9396349Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c compile.c -o compile.o 2021-05-19T20:48:43.0991313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c escape.c -o escape.o 2021-05-19T20:48:43.1567447Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c match.c -o match.o 2021-05-19T20:48:43.3787399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c print.c -o print.o 2021-05-19T20:48:43.5217959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c split.c -o split.o 2021-05-19T20:48:43.5973561Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c subst.c -o subst.o 2021-05-19T20:48:43.7362468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c wcwidth.c -o wcwidth.o 2021-05-19T20:48:43.7891740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-19T20:48:43.8471381Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regcomp.c -o onig/regcomp.o 2021-05-19T20:48:45.0221279Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regenc.c -o onig/regenc.o 2021-05-19T20:48:45.2225098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regerror.c -o onig/regerror.o 2021-05-19T20:48:45.3339278Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regexec.c -o onig/regexec.o 2021-05-19T20:48:46.6671317Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regext.c -o onig/regext.o 2021-05-19T20:48:46.7419075Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/reggnu.c -o onig/reggnu.o 2021-05-19T20:48:46.7972906Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regparse.c -o onig/regparse.o 2021-05-19T20:48:48.4543157Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regposerr.c -o onig/regposerr.o 2021-05-19T20:48:48.4960961Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regposix.c -o onig/regposix.o 2021-05-19T20:48:48.5772246Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regsyntax.c -o onig/regsyntax.o 2021-05-19T20:48:48.6255856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regtrav.c -o onig/regtrav.o 2021-05-19T20:48:48.6682591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regversion.c -o onig/regversion.o 2021-05-19T20:48:48.6911449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/st.c -o onig/st.o 2021-05-19T20:48:48.8802560Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/ascii.c -o onig/enc/ascii.o 2021-05-19T20:48:48.8980245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/big5.c -o onig/enc/big5.o 2021-05-19T20:48:48.9559284Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/cp949.c -o onig/enc/cp949.o 2021-05-19T20:48:49.0001366Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_jp.c -o onig/enc/euc_jp.o 2021-05-19T20:48:49.0895911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_kr.c -o onig/enc/euc_kr.o 2021-05-19T20:48:49.1326698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_tw.c -o onig/enc/euc_tw.o 2021-05-19T20:48:49.1798083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/gb18030.c -o onig/enc/gb18030.o 2021-05-19T20:48:49.2799201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/gbk.c -o onig/enc/gbk.o 2021-05-19T20:48:49.3243145Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_1.c -o onig/enc/iso_8859_1.o 2021-05-19T20:48:49.3840452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_10.c -o onig/enc/iso_8859_10.o 2021-05-19T20:48:49.4345856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_11.c -o onig/enc/iso_8859_11.o 2021-05-19T20:48:49.4603448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_13.c -o onig/enc/iso_8859_13.o 2021-05-19T20:48:49.5105215Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_14.c -o onig/enc/iso_8859_14.o 2021-05-19T20:48:49.5658785Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_15.c -o onig/enc/iso_8859_15.o 2021-05-19T20:48:49.6174004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_16.c -o onig/enc/iso_8859_16.o 2021-05-19T20:48:49.6711375Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_2.c -o onig/enc/iso_8859_2.o 2021-05-19T20:48:49.7200468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_3.c -o onig/enc/iso_8859_3.o 2021-05-19T20:48:49.7739648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_4.c -o onig/enc/iso_8859_4.o 2021-05-19T20:48:49.8243281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_5.c -o onig/enc/iso_8859_5.o 2021-05-19T20:48:49.8669799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_6.c -o onig/enc/iso_8859_6.o 2021-05-19T20:48:49.8926304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_7.c -o onig/enc/iso_8859_7.o 2021-05-19T20:48:49.9381709Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_8.c -o onig/enc/iso_8859_8.o 2021-05-19T20:48:49.9632140Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_9.c -o onig/enc/iso_8859_9.o 2021-05-19T20:48:50.0161743Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/koi8_r.c -o onig/enc/koi8_r.o 2021-05-19T20:48:50.0470919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/koi8_u.c -o onig/enc/koi8_u.o 2021-05-19T20:48:50.0779668Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/shift_jis.c -o onig/enc/shift_jis.o 2021-05-19T20:48:50.1740694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/unicode.c -o onig/enc/unicode.o 2021-05-19T20:48:50.6565462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/us_ascii.c -o onig/enc/us_ascii.o 2021-05-19T20:48:50.6808584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_16be.c -o onig/enc/utf_16be.o 2021-05-19T20:48:50.7299110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_16le.c -o onig/enc/utf_16le.o 2021-05-19T20:48:50.7790509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_32be.c -o onig/enc/utf_32be.o 2021-05-19T20:48:50.8241729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_32le.c -o onig/enc/utf_32le.o 2021-05-19T20:48:50.8683883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_8.c -o onig/enc/utf_8.o 2021-05-19T20:48:50.9351990Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1250.c -o onig/enc/windows_1250.o 2021-05-19T20:48:50.9844564Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1251.c -o onig/enc/windows_1251.o 2021-05-19T20:48:51.0308252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1252.c -o onig/enc/windows_1252.o 2021-05-19T20:48:51.0811550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1253.c -o onig/enc/windows_1253.o 2021-05-19T20:48:51.1286539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1254.c -o onig/enc/windows_1254.o 2021-05-19T20:48:51.1842642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1257.c -o onig/enc/windows_1257.o 2021-05-19T20:48:51.2370707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_31j.c -o onig/enc/windows_31j.o 2021-05-19T20:48:51.3366253Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ore.so compile.o escape.o match.o print.o split.o subst.o wcwidth.o zzz.o onig/regcomp.o onig/regenc.o onig/regerror.o onig/regexec.o onig/regext.o onig/reggnu.o onig/regparse.o onig/regposerr.o onig/regposix.o onig/regsyntax.o onig/regtrav.o onig/regversion.o onig/st.o onig/enc/ascii.o onig/enc/big5.o onig/enc/cp949.o onig/enc/euc_jp.o onig/enc/euc_kr.o onig/enc/euc_tw.o onig/enc/gb18030.o onig/enc/gbk.o onig/enc/iso_8859_1.o onig/enc/iso_8859_10.o onig/enc/iso_8859_11.o onig/enc/iso_8859_13.o onig/enc/iso_8859_14.o onig/enc/iso_8859_15.o onig/enc/iso_8859_16.o onig/enc/iso_8859_2.o onig/enc/iso_8859_3.o onig/enc/iso_8859_4.o onig/enc/iso_8859_5.o onig/enc/iso_8859_6.o onig/enc/iso_8859_7.o onig/enc/iso_8859_8.o onig/enc/iso_8859_9.o onig/enc/koi8_r.o onig/enc/koi8_u.o onig/enc/shift_jis.o onig/enc/unicode.o onig/enc/us_ascii.o onig/enc/utf_16be.o onig/enc/utf_16le.o onig/enc/utf_32be.o onig/enc/utf_32le.o onig/enc/utf_8.o onig/enc/windows_1250.o onig/enc/windows_1251.o onig/enc/windows_1252.o onig/enc/windows_1253.o onig/enc/windows_1254.o onig/enc/windows_1257.o onig/enc/windows_31j.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:48:51.3899819Z installing to /home/runner/work/_temp/Library/00LOCK-ore/00new/ore/libs 2021-05-19T20:48:51.3934919Z ** R 2021-05-19T20:48:51.3986852Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:48:51.7740091Z ** help 2021-05-19T20:48:51.8067154Z *** installing help indices 2021-05-19T20:48:51.8368812Z ** building package indices 2021-05-19T20:48:52.0376338Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:48:52.2163180Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:48:52.2350961Z ** testing if installed package can be loaded from final location 2021-05-19T20:48:52.4098707Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:48:52.4105194Z * DONE (ore) 2021-05-19T20:48:52.6439917Z * installing *source* package ‘shades’ ... 2021-05-19T20:48:52.6458813Z ** package ‘shades’ successfully unpacked and MD5 sums checked 2021-05-19T20:48:52.6460328Z ** using staged installation 2021-05-19T20:48:52.6559675Z ** R 2021-05-19T20:48:52.6618068Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:48:53.4350940Z ** help 2021-05-19T20:48:53.4638951Z *** installing help indices 2021-05-19T20:48:53.4945070Z ** building package indices 2021-05-19T20:48:53.6905440Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:48:53.8740704Z ** testing if installed package can be loaded from final location 2021-05-19T20:48:54.0608515Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:48:54.0617171Z * DONE (shades) 2021-05-19T20:48:54.2623778Z * installing *source* package ‘reportr’ ... 2021-05-19T20:48:54.2632058Z ** package ‘reportr’ successfully unpacked and MD5 sums checked 2021-05-19T20:48:54.2633101Z ** using staged installation 2021-05-19T20:48:54.2745291Z ** R 2021-05-19T20:48:54.2782281Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:48:54.6056465Z ** help 2021-05-19T20:48:54.6172037Z *** installing help indices 2021-05-19T20:48:54.6392035Z ** building package indices 2021-05-19T20:48:54.8232110Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:48:54.9982227Z ** testing if installed package can be loaded from final location 2021-05-19T20:48:55.1727765Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:48:55.1733589Z * DONE (reportr) 2021-05-19T20:48:55.1856157Z 2021-05-19T20:48:55.1857045Z The downloaded source packages are in 2021-05-19T20:48:55.1858227Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:48:55.4609630Z 2021-05-19T20:48:55.4611688Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ ... 2021-05-19T20:48:55.4655893Z 2021-05-19T20:48:55.4657649Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa474e1711/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ 2021-05-19T20:48:55.4766797Z 2021-05-19T20:48:55.4767572Z 2021-05-19T20:48:55.4768570Z ─ preparing ‘tractor.base’: 2021-05-19T20:48:55.4769096Z 2021-05-19T20:48:55.4769554Z 2021-05-19T20:48:55.4796703Z checking DESCRIPTION meta-information ... 2021-05-19T20:48:55.4816195Z 2021-05-19T20:48:55.4818120Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:48:55.5241220Z 2021-05-19T20:48:55.5263437Z 2021-05-19T20:48:55.5265838Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:48:55.5273473Z 2021-05-19T20:48:55.5292378Z 2021-05-19T20:48:55.5294313Z ─ checking for empty or unneeded directories 2021-05-19T20:48:55.5327748Z 2021-05-19T20:48:55.5329946Z 2021-05-19T20:48:55.5331747Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:48:55.5393211Z 2021-05-19T20:48:55.5411985Z 2021-05-19T20:48:55.5413927Z ─ building ‘tractor.base_3.3.4.tar.gz’ 2021-05-19T20:48:55.7758240Z 2021-05-19T20:48:55.7761382Z 2021-05-19T20:48:55.7762883Z 2021-05-19T20:48:55.7872072Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:48:55.7872889Z (as ‘lib’ is unspecified) 2021-05-19T20:48:56.1193419Z ERROR: dependency ‘RNifti’ is not available for package ‘tractor.base’ 2021-05-19T20:48:56.1195312Z * removing ‘/home/runner/work/_temp/Library/tractor.base’ 2021-05-19T20:48:56.3171968Z Downloading GitHub repo neuroconductor/dcm2niir@cd9c14f5234e08d13eea0319a25caec3812bb3ab 2021-05-19T20:48:57.3163596Z 2021-05-19T20:48:57.3165390Z Installing 3 packages: R.methodsS3, R.oo, R.utils 2021-05-19T20:48:57.3166687Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-19T20:48:57.3167809Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-19T20:48:57.3168726Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-19T20:48:57.3172403Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:48:57.3173499Z (as ‘lib’ is unspecified) 2021-05-19T20:49:11.5275396Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-19T20:49:12.1223672Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-19T20:49:12.1232327Z ================================================== 2021-05-19T20:49:12.1232869Z downloaded 23 KB 2021-05-19T20:49:12.1233168Z 2021-05-19T20:49:12.1266619Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-19T20:49:12.5303367Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-19T20:49:12.5497375Z ================================================== 2021-05-19T20:49:12.5498236Z downloaded 373 KB 2021-05-19T20:49:12.5498701Z 2021-05-19T20:49:12.5537845Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-19T20:49:12.9387583Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-19T20:49:12.9580590Z ================================================== 2021-05-19T20:49:12.9581127Z downloaded 353 KB 2021-05-19T20:49:12.9581398Z 2021-05-19T20:49:13.1844262Z * installing *source* package ‘R.methodsS3’ ... 2021-05-19T20:49:13.1859957Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-19T20:49:13.1861206Z ** using staged installation 2021-05-19T20:49:13.1978127Z ** R 2021-05-19T20:49:13.2040979Z ** inst 2021-05-19T20:49:13.2048796Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:49:13.6652499Z ** help 2021-05-19T20:49:13.7027845Z *** installing help indices 2021-05-19T20:49:13.7378550Z ** building package indices 2021-05-19T20:49:13.9411278Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:49:14.1204732Z ** testing if installed package can be loaded from final location 2021-05-19T20:49:14.3019143Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:49:14.3028093Z * DONE (R.methodsS3) 2021-05-19T20:49:14.6646935Z * installing *source* package ‘R.oo’ ... 2021-05-19T20:49:14.6717149Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-19T20:49:14.6718355Z ** using staged installation 2021-05-19T20:49:14.6848506Z ** R 2021-05-19T20:49:14.7161965Z ** inst 2021-05-19T20:49:14.7175666Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:49:17.4167520Z ** help 2021-05-19T20:49:17.8884560Z *** installing help indices 2021-05-19T20:49:18.2305256Z ** building package indices 2021-05-19T20:49:18.6883122Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:49:18.8909617Z ** testing if installed package can be loaded from final location 2021-05-19T20:49:19.1719350Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:49:19.1766333Z * DONE (R.oo) 2021-05-19T20:49:19.6926688Z * installing *source* package ‘R.utils’ ... 2021-05-19T20:49:19.7056348Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-19T20:49:19.7057113Z ** using staged installation 2021-05-19T20:49:19.7194035Z ** R 2021-05-19T20:49:19.7855708Z ** inst 2021-05-19T20:49:19.7867146Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:49:25.6643984Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-19T20:49:25.6645381Z ** help 2021-05-19T20:49:25.6646244Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-19T20:49:26.5106443Z *** installing help indices 2021-05-19T20:49:26.9804068Z ** building package indices 2021-05-19T20:49:27.7013397Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:49:27.9419417Z ** testing if installed package can be loaded from final location 2021-05-19T20:49:28.3321691Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:49:28.3396794Z * DONE (R.utils) 2021-05-19T20:49:28.3576932Z 2021-05-19T20:49:28.3578115Z The downloaded source packages are in 2021-05-19T20:49:28.3579506Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:49:28.5356561Z 2021-05-19T20:49:28.5373141Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa4610fa01/neuroconductor-dcm2niir-cd9c14f/DESCRIPTION’ ... 2021-05-19T20:49:28.5391072Z 2021-05-19T20:49:28.5392788Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa4610fa01/neuroconductor-dcm2niir-cd9c14f/DESCRIPTION’ 2021-05-19T20:49:28.5476801Z 2021-05-19T20:49:28.5477225Z 2021-05-19T20:49:28.5477982Z ─ preparing ‘dcm2niir’: 2021-05-19T20:49:28.5478277Z 2021-05-19T20:49:28.5478569Z 2021-05-19T20:49:28.5561954Z checking DESCRIPTION meta-information ... 2021-05-19T20:49:28.5580941Z 2021-05-19T20:49:28.5582318Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:49:28.5831791Z 2021-05-19T20:49:28.5855000Z 2021-05-19T20:49:28.5857028Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:49:28.5863805Z 2021-05-19T20:49:28.5884288Z 2021-05-19T20:49:28.5885848Z ─ checking for empty or unneeded directories 2021-05-19T20:49:28.5893519Z 2021-05-19T20:49:28.5911345Z 2021-05-19T20:49:28.5912691Z ─ building ‘dcm2niir_0.6.9.1.tar.gz’ 2021-05-19T20:49:28.6003416Z 2021-05-19T20:49:28.6005162Z 2021-05-19T20:49:28.6006011Z 2021-05-19T20:49:28.6302914Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:49:28.6304137Z (as ‘lib’ is unspecified) 2021-05-19T20:49:28.8368805Z * installing *source* package ‘dcm2niir’ ... 2021-05-19T20:49:28.8370475Z ** using staged installation 2021-05-19T20:49:28.8546766Z ** R 2021-05-19T20:49:28.8591516Z ** inst 2021-05-19T20:49:28.8599045Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:49:29.5096428Z ** help 2021-05-19T20:49:29.5323899Z *** installing help indices 2021-05-19T20:49:29.5511885Z ** building package indices 2021-05-19T20:49:29.7370350Z ** installing vignettes 2021-05-19T20:49:29.7407892Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:49:30.2414067Z ** testing if installed package can be loaded from final location 2021-05-19T20:49:30.7397030Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:49:30.7403221Z * DONE (dcm2niir) 2021-05-19T20:49:30.9286200Z Downloading GitHub repo neuroconductor/dcmtk@491cbcea629724ddf29fcf21643abe277a816723 2021-05-19T20:49:32.1986828Z 2021-05-19T20:49:32.1988769Z lubridate (NA -> 1.7.10) [CRAN] 2021-05-19T20:49:32.1990528Z Installing 1 packages: lubridate 2021-05-19T20:49:32.1998548Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:49:32.1999634Z (as ‘lib’ is unspecified) 2021-05-19T20:49:46.2643418Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lubridate_1.7.10.tar.gz' 2021-05-19T20:49:46.7154843Z Content type 'binary/octet-stream' length 474741 bytes (463 KB) 2021-05-19T20:49:46.7400391Z ================================================== 2021-05-19T20:49:46.7401108Z downloaded 463 KB 2021-05-19T20:49:46.7401388Z 2021-05-19T20:49:47.0969134Z * installing *source* package ‘lubridate’ ... 2021-05-19T20:49:47.1043377Z ** package ‘lubridate’ successfully unpacked and MD5 sums checked 2021-05-19T20:49:47.1044608Z ** using staged installation 2021-05-19T20:49:47.1223400Z ** libs 2021-05-19T20:49:47.1283651Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o 2021-05-19T20:49:47.5229868Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o 2021-05-19T20:49:48.0371560Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o 2021-05-19T20:49:48.8584912Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o 2021-05-19T20:49:51.0721449Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o 2021-05-19T20:49:51.7759530Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o 2021-05-19T20:49:52.2750617Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o 2021-05-19T20:49:53.0073765Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/zone_info_source.cc -o cctz/src/zone_info_source.o 2021-05-19T20:49:53.0075658Z ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o ./cctz/src/zone_info_source.o 2021-05-19T20:49:53.0077799Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-19T20:49:57.5077895Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c update.cpp -o update.o 2021-05-19T20:50:02.0733455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-19T20:50:02.1521763Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c datetime.c -o datetime.o 2021-05-19T20:50:02.2491688Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c period.c -o period.o 2021-05-19T20:50:02.3303088Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tparse.c -o tparse.o 2021-05-19T20:50:02.5605534Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:50:02.6656944Z installing to /home/runner/work/_temp/Library/00LOCK-lubridate/00new/lubridate/libs 2021-05-19T20:50:02.6712126Z ** R 2021-05-19T20:50:02.7000509Z ** data 2021-05-19T20:50:02.7005555Z *** moving datasets to lazyload DB 2021-05-19T20:50:03.0617583Z ** inst 2021-05-19T20:50:03.0634161Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:50:06.8248215Z ** help 2021-05-19T20:50:07.0021648Z *** installing help indices 2021-05-19T20:50:07.1296668Z *** copying figures 2021-05-19T20:50:07.1298488Z ** building package indices 2021-05-19T20:50:07.4256518Z ** installing vignettes 2021-05-19T20:50:07.4313628Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:50:07.8071302Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:50:07.8272221Z ** testing if installed package can be loaded from final location 2021-05-19T20:50:08.2645318Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:50:08.2682416Z * DONE (lubridate) 2021-05-19T20:50:08.2816805Z 2021-05-19T20:50:08.2817950Z The downloaded source packages are in 2021-05-19T20:50:08.2819347Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:50:08.4614215Z 2021-05-19T20:50:08.4652757Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa18ca6456/neuroconductor-dcmtk-491cbce/DESCRIPTION’ ... 2021-05-19T20:50:08.4653596Z 2021-05-19T20:50:08.4654790Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa18ca6456/neuroconductor-dcmtk-491cbce/DESCRIPTION’ 2021-05-19T20:50:08.4808641Z 2021-05-19T20:50:08.4809127Z 2021-05-19T20:50:08.4810058Z ─ preparing ‘dcmtk’: 2021-05-19T20:50:08.4810341Z 2021-05-19T20:50:08.4810618Z 2021-05-19T20:50:08.4842249Z checking DESCRIPTION meta-information ... 2021-05-19T20:50:08.4860430Z 2021-05-19T20:50:08.4861810Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:50:08.4867180Z 2021-05-19T20:50:08.4884707Z 2021-05-19T20:50:08.4885940Z ─ running ‘cleanup’ 2021-05-19T20:50:08.5245696Z 2021-05-19T20:50:08.5262432Z 2021-05-19T20:50:08.5265148Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:50:08.5272886Z 2021-05-19T20:50:08.5292916Z 2021-05-19T20:50:08.5294851Z ─ checking for empty or unneeded directories 2021-05-19T20:50:08.5301898Z 2021-05-19T20:50:08.5319913Z 2021-05-19T20:50:08.5321743Z ─ building ‘dcmtk_0.6.8.1.tar.gz’ 2021-05-19T20:50:08.6581226Z 2021-05-19T20:50:08.6584431Z 2021-05-19T20:50:08.6585941Z 2021-05-19T20:50:08.6671805Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:50:08.6672585Z (as ‘lib’ is unspecified) 2021-05-19T20:50:08.9395927Z * installing *source* package ‘dcmtk’ ... 2021-05-19T20:50:08.9399058Z ** using staged installation 2021-05-19T20:50:08.9573591Z ** R 2021-05-19T20:50:08.9641497Z ** data 2021-05-19T20:50:08.9647429Z *** moving datasets to lazyload DB 2021-05-19T20:50:09.0043929Z ** inst 2021-05-19T20:50:09.0066295Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:50:10.1254700Z ** help 2021-05-19T20:50:10.1676477Z *** installing help indices 2021-05-19T20:50:10.2086827Z ** building package indices 2021-05-19T20:50:10.4198713Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:50:11.2240892Z ** testing if installed package can be loaded from final location 2021-05-19T20:50:12.0287160Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:50:12.0297889Z * DONE (dcmtk) 2021-05-19T20:50:12.2797900Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-19T20:50:13.8005209Z 2021-05-19T20:50:13.8007210Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-19T20:50:13.8008239Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-19T20:50:13.8009114Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-19T20:50:13.8009980Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-19T20:50:13.8011054Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-19T20:50:13.8011933Z rticles (NA -> 0.19 ) [CRAN] 2021-05-19T20:50:13.8012791Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-19T20:50:13.8013616Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-19T20:50:13.9583435Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-19T20:50:15.1516634Z 2021-05-19T20:50:15.3296034Z 2021-05-19T20:50:15.3318557Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa3e94b248/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-19T20:50:15.3335685Z 2021-05-19T20:50:15.3337457Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa3e94b248/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-19T20:50:15.3494467Z 2021-05-19T20:50:15.3494991Z 2021-05-19T20:50:15.3496181Z ─ preparing ‘RNifti’: 2021-05-19T20:50:15.3496462Z 2021-05-19T20:50:15.3496759Z 2021-05-19T20:50:15.3622661Z checking DESCRIPTION meta-information ... 2021-05-19T20:50:15.3641824Z 2021-05-19T20:50:15.3643218Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:50:15.3649041Z 2021-05-19T20:50:15.3668462Z 2021-05-19T20:50:15.3669699Z ─ cleaning src 2021-05-19T20:50:15.3683150Z 2021-05-19T20:50:15.3706824Z 2021-05-19T20:50:15.3712479Z ─ running ‘cleanup’ 2021-05-19T20:50:15.4161031Z 2021-05-19T20:50:15.4185248Z 2021-05-19T20:50:15.4187603Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:50:15.4527027Z 2021-05-19T20:50:15.4551414Z 2021-05-19T20:50:15.4553841Z ─ checking for empty or unneeded directories 2021-05-19T20:50:15.4578203Z 2021-05-19T20:50:15.4597802Z 2021-05-19T20:50:15.4599659Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-19T20:50:15.7520010Z 2021-05-19T20:50:15.7522981Z 2021-05-19T20:50:15.7524429Z 2021-05-19T20:50:15.7617288Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:50:15.7618354Z (as ‘lib’ is unspecified) 2021-05-19T20:50:16.0879929Z * installing *source* package ‘RNifti’ ... 2021-05-19T20:50:16.0881460Z ** using staged installation 2021-05-19T20:50:16.1044652Z ** libs 2021-05-19T20:50:16.1096897Z 2021-05-19T20:50:33.9393153Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-19T20:50:33.9395843Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-19T20:50:34.0245429Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-19T20:50:34.1097999Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-19T20:50:34.1477923Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-19T20:50:34.2550881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-19T20:50:34.7097016Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-19T20:50:34.7513411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-19T20:50:34.8697022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-19T20:50:35.0200208Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-19T20:50:35.1467652Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-19T20:50:35.3778609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-19T20:50:35.4859348Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-19T20:50:35.9776688Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-19T20:50:36.0703135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-19T20:50:36.3679215Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-19T20:50:36.4039395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-19T20:50:36.4490203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-19T20:50:36.5254414Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-19T20:50:37.6177968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-19T20:50:39.8761576Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:50:40.0695347Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-19T20:50:40.0752452Z ** R 2021-05-19T20:50:40.0827299Z ** inst 2021-05-19T20:50:40.0856724Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:50:40.8539760Z ** help 2021-05-19T20:50:40.9039646Z *** installing help indices 2021-05-19T20:50:40.9379221Z ** building package indices 2021-05-19T20:50:41.1506653Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:50:41.4173769Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:50:41.4424903Z ** testing if installed package can be loaded from final location 2021-05-19T20:50:41.7111394Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:50:41.7122370Z * DONE (RNifti) 2021-05-19T20:50:41.7261345Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-19T20:50:41.7271673Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:50:41.7272459Z (as ‘lib’ is unspecified) 2021-05-19T20:50:55.9959964Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-19T20:50:56.5018260Z Content type 'application/x-tar' length 7843 bytes 2021-05-19T20:50:56.5019577Z ================================================== 2021-05-19T20:50:56.5020375Z downloaded 7843 bytes 2021-05-19T20:50:56.5020818Z 2021-05-19T20:50:56.5057315Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-19T20:50:57.5245155Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-19T20:50:57.5252135Z ================================================== 2021-05-19T20:50:57.5252677Z downloaded 28 KB 2021-05-19T20:50:57.5253038Z 2021-05-19T20:50:57.5254433Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-19T20:50:57.5255964Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-19T20:50:57.5256636Z ================================================== 2021-05-19T20:50:57.5257121Z downloaded 70 KB 2021-05-19T20:50:57.5257460Z 2021-05-19T20:50:57.5258653Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-19T20:50:58.2080720Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-19T20:50:58.2728679Z ================================================== 2021-05-19T20:50:58.2729533Z downloaded 3.1 MB 2021-05-19T20:50:58.2729920Z 2021-05-19T20:50:58.2767258Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-19T20:50:58.7828272Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-19T20:50:58.8151289Z ================================================== 2021-05-19T20:50:58.8152347Z downloaded 1.6 MB 2021-05-19T20:50:58.8152872Z 2021-05-19T20:50:58.8189074Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-19T20:50:59.6126978Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-19T20:50:59.6128338Z ================================================== 2021-05-19T20:50:59.6128969Z downloaded 21 KB 2021-05-19T20:50:59.6129388Z 2021-05-19T20:50:59.6165402Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-19T20:51:00.2713938Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-19T20:51:00.2714740Z ================================================== 2021-05-19T20:51:00.2715205Z downloaded 10 KB 2021-05-19T20:51:00.2715507Z 2021-05-19T20:51:00.4687443Z * installing *source* package ‘base64enc’ ... 2021-05-19T20:51:00.4696513Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:00.4697605Z ** using staged installation 2021-05-19T20:51:00.4798092Z ** libs 2021-05-19T20:51:00.4844849Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:51:00.5910321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-19T20:51:00.6658351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-19T20:51:00.7386470Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:51:00.7617760Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-19T20:51:00.7624724Z ** R 2021-05-19T20:51:00.7654018Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:01.0143387Z ** help 2021-05-19T20:51:01.0364791Z *** installing help indices 2021-05-19T20:51:01.0525203Z ** building package indices 2021-05-19T20:51:01.2379740Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:01.4138724Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:51:01.4315919Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:01.6031931Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:01.6036981Z * DONE (base64enc) 2021-05-19T20:51:01.8181468Z * installing *source* package ‘tinytex’ ... 2021-05-19T20:51:01.8193242Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:01.8194276Z ** using staged installation 2021-05-19T20:51:01.8394145Z ** R 2021-05-19T20:51:01.8462112Z ** inst 2021-05-19T20:51:01.8469343Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:02.5336286Z ** help 2021-05-19T20:51:02.5651572Z *** installing help indices 2021-05-19T20:51:02.5918256Z ** building package indices 2021-05-19T20:51:02.7957399Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:02.9758527Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:03.1671437Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:03.1679894Z * DONE (tinytex) 2021-05-19T20:51:03.3801871Z * installing *source* package ‘abind’ ... 2021-05-19T20:51:03.3814197Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:03.3816522Z ** using staged installation 2021-05-19T20:51:03.3921986Z ** R 2021-05-19T20:51:03.3970293Z ** inst 2021-05-19T20:51:03.3978340Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:03.9405530Z ** help 2021-05-19T20:51:03.9658534Z *** installing help indices 2021-05-19T20:51:03.9876224Z ** building package indices 2021-05-19T20:51:04.1838341Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:05.0263272Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:05.0265104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-19T20:51:05.0267038Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:05.0268509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-19T20:51:05.0269864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:51:05.0270842Z * DONE (abind) 2021-05-19T20:51:05.0271933Z * installing *source* package ‘bitops’ ... 2021-05-19T20:51:05.0273187Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:05.0274165Z ** using staged installation 2021-05-19T20:51:05.0274818Z ** libs 2021-05-19T20:51:05.0342688Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:51:05.0499523Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-19T20:51:05.0514376Z ** R 2021-05-19T20:51:05.0539914Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:05.2721379Z ** help 2021-05-19T20:51:05.2968185Z *** installing help indices 2021-05-19T20:51:05.3145114Z ** building package indices 2021-05-19T20:51:05.5015884Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:05.6752362Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:51:05.6925751Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:05.8613789Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:05.8620110Z * DONE (bitops) 2021-05-19T20:51:06.1045327Z * installing *source* package ‘htmltools’ ... 2021-05-19T20:51:06.1066531Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:06.1068937Z ** using staged installation 2021-05-19T20:51:06.1216368Z ** libs 2021-05-19T20:51:06.1262335Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:51:06.1709909Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-19T20:51:06.2750072Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:51:06.2967254Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-19T20:51:06.2980034Z ** R 2021-05-19T20:51:06.3103391Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:07.6972740Z ** help 2021-05-19T20:51:07.7756739Z *** installing help indices 2021-05-19T20:51:07.8362654Z ** building package indices 2021-05-19T20:51:08.0711783Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:08.2724344Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:51:08.2899942Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:08.5089079Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:08.5105238Z * DONE (htmltools) 2021-05-19T20:51:09.2799479Z * installing *source* package ‘rmarkdown’ ... 2021-05-19T20:51:09.3077015Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:09.3078503Z ** using staged installation 2021-05-19T20:51:09.3347877Z ** R 2021-05-19T20:51:09.3714467Z ** inst 2021-05-19T20:51:09.3933733Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:12.6669193Z ** help 2021-05-19T20:51:12.8613404Z *** installing help indices 2021-05-19T20:51:13.0192750Z *** copying figures 2021-05-19T20:51:13.0194387Z ** building package indices 2021-05-19T20:51:13.3047653Z ** installing vignettes 2021-05-19T20:51:13.3123211Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:13.5508169Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:13.8476753Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:13.8533261Z * DONE (rmarkdown) 2021-05-19T20:51:14.4193415Z * installing *source* package ‘rticles’ ... 2021-05-19T20:51:14.4356087Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:14.4358738Z ** using staged installation 2021-05-19T20:51:14.4569428Z ** R 2021-05-19T20:51:14.4629630Z ** inst 2021-05-19T20:51:14.4855722Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:14.9192896Z ** help 2021-05-19T20:51:14.9568620Z *** installing help indices 2021-05-19T20:51:14.9893643Z ** building package indices 2021-05-19T20:51:15.1897840Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:15.4323389Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:15.6716797Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:15.6758417Z * DONE (rticles) 2021-05-19T20:51:15.6896962Z 2021-05-19T20:51:15.6897765Z The downloaded source packages are in 2021-05-19T20:51:15.6898929Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:51:15.8139499Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-19T20:51:15.8141054Z Use `force = TRUE` to force installation 2021-05-19T20:51:15.9966374Z 2021-05-19T20:51:16.0005460Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa5895a7a5/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-19T20:51:16.0006707Z 2021-05-19T20:51:16.0008076Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa5895a7a5/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-19T20:51:16.0256679Z 2021-05-19T20:51:16.0275130Z 2021-05-19T20:51:16.0279934Z ─ preparing ‘oro.nifti’: 2021-05-19T20:51:16.0289190Z 2021-05-19T20:51:16.0291311Z 2021-05-19T20:51:16.0400164Z checking DESCRIPTION meta-information ... 2021-05-19T20:51:16.0420454Z 2021-05-19T20:51:16.0422439Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:51:16.1752400Z 2021-05-19T20:51:16.1776679Z 2021-05-19T20:51:16.1779405Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:51:16.1788348Z 2021-05-19T20:51:16.1809228Z 2021-05-19T20:51:16.1811442Z ─ checking for empty or unneeded directories 2021-05-19T20:51:16.1814194Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-19T20:51:16.1821204Z 2021-05-19T20:51:16.1823252Z 2021-05-19T20:51:16.1825210Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-19T20:51:16.1926258Z 2021-05-19T20:51:16.1945750Z 2021-05-19T20:51:16.1947645Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-19T20:51:16.6782464Z 2021-05-19T20:51:16.6785592Z 2021-05-19T20:51:16.6787123Z 2021-05-19T20:51:16.6962552Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:51:16.6963354Z (as ‘lib’ is unspecified) 2021-05-19T20:51:17.2168400Z * installing *source* package ‘oro.nifti’ ... 2021-05-19T20:51:17.2169920Z ** using staged installation 2021-05-19T20:51:17.2358537Z ** R 2021-05-19T20:51:17.2789729Z ** demo 2021-05-19T20:51:17.2795820Z ** inst 2021-05-19T20:51:17.2867992Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:51:23.8269708Z 2021-05-19T20:51:23.8271508Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-19T20:51:23.8273109Z ** help 2021-05-19T20:51:24.2005078Z *** installing help indices 2021-05-19T20:51:24.4868506Z ** building package indices 2021-05-19T20:51:24.8973155Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:51:25.4722146Z ** testing if installed package can be loaded from final location 2021-05-19T20:51:26.1589989Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:51:26.1666009Z * DONE (oro.nifti) 2021-05-19T20:51:26.3604093Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-19T20:51:28.2752248Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-19T20:51:28.2753399Z Installing 1 packages: matrixStats 2021-05-19T20:51:28.2760871Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:51:28.2761985Z (as ‘lib’ is unspecified) 2021-05-19T20:51:42.1883005Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-19T20:51:42.6935740Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-19T20:51:42.7065373Z ================================================== 2021-05-19T20:51:42.7066319Z downloaded 190 KB 2021-05-19T20:51:42.7066853Z 2021-05-19T20:51:43.1328938Z * installing *source* package ‘matrixStats’ ... 2021-05-19T20:51:43.1424463Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-19T20:51:43.1426850Z ** using staged installation 2021-05-19T20:51:43.1572729Z ** libs 2021-05-19T20:51:43.1632301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-19T20:51:43.2030311Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-19T20:51:43.2824574Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-19T20:51:43.3816454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-19T20:51:43.4728604Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-19T20:51:43.6036084Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-19T20:51:44.8536622Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-19T20:51:45.1961819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-19T20:51:46.5853568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-19T20:51:46.7862809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-19T20:51:46.8479738Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-19T20:51:47.0406830Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-19T20:51:47.1765334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-19T20:51:47.3200935Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-19T20:51:47.3851987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-19T20:51:48.7216708Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-19T20:51:49.6977734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-19T20:51:50.6764303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-19T20:51:51.5052987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-19T20:51:52.3305746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-19T20:51:54.2442862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-19T20:51:54.3742099Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-19T20:51:55.3091377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-19T20:51:55.8614095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-19T20:51:56.7091647Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-19T20:51:57.0994596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-19T20:51:58.5699845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-19T20:52:10.0326460Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-19T20:52:10.5640107Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-19T20:52:11.1861139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-19T20:52:11.3038466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-19T20:52:11.4120327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-19T20:52:11.6457353Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-19T20:52:11.8084638Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-19T20:52:12.2088642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-19T20:53:02.7727296Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:53:02.8618397Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-19T20:53:02.8724558Z ** R 2021-05-19T20:53:02.8930859Z ** inst 2021-05-19T20:53:02.8977151Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:04.2213098Z ** help 2021-05-19T20:53:04.3554613Z *** installing help indices 2021-05-19T20:53:04.4426616Z ** building package indices 2021-05-19T20:53:04.7016560Z ** installing vignettes 2021-05-19T20:53:04.7059928Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:04.8858724Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:53:04.9092811Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:05.1046485Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:05.1067096Z * DONE (matrixStats) 2021-05-19T20:53:05.1256982Z 2021-05-19T20:53:05.1258087Z The downloaded source packages are in 2021-05-19T20:53:05.1259521Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:53:05.3050886Z 2021-05-19T20:53:05.3066241Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aab242ac9/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-19T20:53:05.3084248Z 2021-05-19T20:53:05.3085992Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aab242ac9/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-19T20:53:05.3330739Z 2021-05-19T20:53:05.3331750Z 2021-05-19T20:53:05.3332722Z ─ preparing ‘neurobase’: 2021-05-19T20:53:05.3333035Z 2021-05-19T20:53:05.3333311Z 2021-05-19T20:53:05.3422188Z checking DESCRIPTION meta-information ... 2021-05-19T20:53:05.3442598Z 2021-05-19T20:53:05.3444575Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:53:05.4249886Z 2021-05-19T20:53:05.4275389Z 2021-05-19T20:53:05.4278163Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:53:05.4287169Z 2021-05-19T20:53:05.4308874Z 2021-05-19T20:53:05.4311229Z ─ checking for empty or unneeded directories 2021-05-19T20:53:05.4323977Z 2021-05-19T20:53:05.4342792Z 2021-05-19T20:53:05.4344764Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-19T20:53:05.4994540Z 2021-05-19T20:53:05.4997486Z 2021-05-19T20:53:05.4999019Z 2021-05-19T20:53:05.5088427Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:53:05.5089227Z (as ‘lib’ is unspecified) 2021-05-19T20:53:05.7965363Z * installing *source* package ‘neurobase’ ... 2021-05-19T20:53:05.7966894Z ** using staged installation 2021-05-19T20:53:05.8137139Z ** R 2021-05-19T20:53:05.8333989Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:08.2239974Z ** help 2021-05-19T20:53:08.3688540Z *** installing help indices 2021-05-19T20:53:08.4700084Z ** building package indices 2021-05-19T20:53:08.7496421Z ** installing vignettes 2021-05-19T20:53:08.7534439Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:09.4580479Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:10.1756990Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:10.1780152Z * DONE (neurobase) 2021-05-19T20:53:10.3960069Z Downloading GitHub repo neuroconductor/fslr@2836c318184779a56162a0b4936ee42d348395a7 2021-05-19T20:53:11.8953837Z 2021-05-19T20:53:12.0784619Z 2021-05-19T20:53:12.0799395Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa289bd579/neuroconductor-fslr-2836c31/DESCRIPTION’ ... 2021-05-19T20:53:12.0817072Z 2021-05-19T20:53:12.0818514Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa289bd579/neuroconductor-fslr-2836c31/DESCRIPTION’ 2021-05-19T20:53:12.1080995Z 2021-05-19T20:53:12.1082332Z 2021-05-19T20:53:12.1083515Z ─ preparing ‘fslr’: 2021-05-19T20:53:12.1084072Z 2021-05-19T20:53:12.1084613Z 2021-05-19T20:53:12.1166091Z checking DESCRIPTION meta-information ... 2021-05-19T20:53:12.1187612Z 2021-05-19T20:53:12.1189691Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:53:12.2754530Z 2021-05-19T20:53:12.2779560Z 2021-05-19T20:53:12.2782280Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:53:12.2791389Z 2021-05-19T20:53:12.2813655Z 2021-05-19T20:53:12.2816274Z ─ checking for empty or unneeded directories 2021-05-19T20:53:12.2851274Z 2021-05-19T20:53:12.2871547Z 2021-05-19T20:53:12.2873518Z ─ building ‘fslr_2.25.0.tar.gz’ 2021-05-19T20:53:12.4113686Z 2021-05-19T20:53:12.4116811Z 2021-05-19T20:53:12.4118343Z 2021-05-19T20:53:12.4235407Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:53:12.4236632Z (as ‘lib’ is unspecified) 2021-05-19T20:53:12.8309711Z * installing *source* package ‘fslr’ ... 2021-05-19T20:53:12.8312942Z ** using staged installation 2021-05-19T20:53:12.8486560Z ** R 2021-05-19T20:53:12.8821880Z ** inst 2021-05-19T20:53:12.8833820Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:15.3774544Z ** help 2021-05-19T20:53:15.7644729Z *** installing help indices 2021-05-19T20:53:16.0794406Z ** building package indices 2021-05-19T20:53:16.5090339Z ** installing vignettes 2021-05-19T20:53:16.5167954Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:17.2635631Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:18.0607891Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:18.0630804Z * DONE (fslr) 2021-05-19T20:53:18.0819918Z Installing 14 packages: base64enc, ore, R.methodsS3, R.oo, bitops, RNifti, R.utils, matrixStats, abind, tinytex, htmltools, shades, reportr, rmarkdown 2021-05-19T20:53:18.0824187Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:53:18.0825210Z (as ‘lib’ is unspecified) 2021-05-19T20:53:33.0692318Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-19T20:53:33.0693927Z Content type 'application/x-tar' length 7843 bytes 2021-05-19T20:53:33.0694578Z ================================================== 2021-05-19T20:53:33.0695060Z downloaded 7843 bytes 2021-05-19T20:53:33.0695360Z 2021-05-19T20:53:33.0696880Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ore_1.6.3.tar.gz' 2021-05-19T20:53:33.2096544Z Content type 'application/x-tar' length 428565 bytes (418 KB) 2021-05-19T20:53:33.2294060Z ================================================== 2021-05-19T20:53:33.2295172Z downloaded 418 KB 2021-05-19T20:53:33.2297979Z 2021-05-19T20:53:33.2330006Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-19T20:53:33.4990049Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-19T20:53:33.5020417Z ================================================== 2021-05-19T20:53:33.5021290Z downloaded 23 KB 2021-05-19T20:53:33.5021814Z 2021-05-19T20:53:33.5056179Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-19T20:53:33.7775063Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-19T20:53:33.7966202Z ================================================== 2021-05-19T20:53:33.7967200Z downloaded 373 KB 2021-05-19T20:53:33.7967774Z 2021-05-19T20:53:33.8005188Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-19T20:53:34.0868163Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-19T20:53:34.0870704Z ================================================== 2021-05-19T20:53:34.0871207Z downloaded 10 KB 2021-05-19T20:53:34.0871491Z 2021-05-19T20:53:34.0909349Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:53:34.3218677Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:53:34.3221281Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-19T20:53:34.3222700Z In addition: Warning messages: 2021-05-19T20:53:34.3223352Z 1: In i.p(...) : 2021-05-19T20:53:34.3224789Z installation of package ‘/tmp/RtmpbwIEqN/filed1aa54293af1/tractor.base_3.3.4.tar.gz’ had non-zero exit status 2021-05-19T20:53:34.3226007Z 2: In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-19T20:53:34.3227999Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-19T20:53:34.3229797Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-19T20:53:34.3230961Z download of package ‘RNifti’ failed 2021-05-19T20:53:34.3232597Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-19T20:53:34.5931669Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-19T20:53:34.6118698Z ================================================== 2021-05-19T20:53:34.6119448Z downloaded 353 KB 2021-05-19T20:53:34.6119842Z 2021-05-19T20:53:34.6159111Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-19T20:53:35.6871640Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-19T20:53:35.7014851Z ================================================== 2021-05-19T20:53:35.7015944Z downloaded 190 KB 2021-05-19T20:53:35.7016446Z 2021-05-19T20:53:35.7049299Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-19T20:53:35.9778020Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-19T20:53:35.9779349Z ================================================== 2021-05-19T20:53:35.9780046Z downloaded 21 KB 2021-05-19T20:53:35.9780820Z 2021-05-19T20:53:35.9887007Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-19T20:53:36.3787055Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-19T20:53:36.3788411Z ================================================== 2021-05-19T20:53:36.3788944Z downloaded 28 KB 2021-05-19T20:53:36.3789391Z 2021-05-19T20:53:36.3828033Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-19T20:53:36.6702887Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-19T20:53:36.6764680Z ================================================== 2021-05-19T20:53:36.6766258Z downloaded 70 KB 2021-05-19T20:53:36.6766854Z 2021-05-19T20:53:36.6811022Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/shades_1.4.0.tar.gz' 2021-05-19T20:53:36.8452346Z Content type 'application/x-tar' length 46488 bytes (45 KB) 2021-05-19T20:53:36.8504377Z ================================================== 2021-05-19T20:53:36.8505278Z downloaded 45 KB 2021-05-19T20:53:36.8505792Z 2021-05-19T20:53:36.8541321Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/reportr_1.3.0.tar.gz' 2021-05-19T20:53:37.0260050Z Content type 'application/x-tar' length 11298 bytes (11 KB) 2021-05-19T20:53:37.0262628Z ================================================== 2021-05-19T20:53:37.0263433Z downloaded 11 KB 2021-05-19T20:53:37.0263955Z 2021-05-19T20:53:37.0305309Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-19T20:53:37.3128583Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-19T20:53:37.3544444Z ================================================== 2021-05-19T20:53:37.3544969Z downloaded 3.1 MB 2021-05-19T20:53:37.3545407Z 2021-05-19T20:53:37.5565701Z * installing *source* package ‘base64enc’ ... 2021-05-19T20:53:37.5573469Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-19T20:53:37.5604471Z ** using staged installation 2021-05-19T20:53:37.5714910Z ** libs 2021-05-19T20:53:37.5761575Z 2021-05-19T20:53:37.5763040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-19T20:53:37.6820239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-19T20:53:37.7557692Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-19T20:53:37.8274630Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:53:37.8496750Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-19T20:53:37.8512769Z ** R 2021-05-19T20:53:37.8542214Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:38.1072217Z ** help 2021-05-19T20:53:38.1292197Z *** installing help indices 2021-05-19T20:53:38.1452514Z ** building package indices 2021-05-19T20:53:38.3323500Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:38.5107032Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:53:38.5283752Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:38.7036611Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:38.7041591Z * DONE (base64enc) 2021-05-19T20:53:39.0461461Z * installing *source* package ‘ore’ ... 2021-05-19T20:53:39.0538963Z ** package ‘ore’ successfully unpacked and MD5 sums checked 2021-05-19T20:53:39.0569526Z ** using staged installation 2021-05-19T20:53:39.1813163Z checking for gcc... gcc 2021-05-19T20:53:39.2386135Z checking whether the C compiler works... yes 2021-05-19T20:53:39.2387391Z checking for C compiler default output file name... a.out 2021-05-19T20:53:39.2745096Z checking for suffix of executables... 2021-05-19T20:53:39.3159172Z checking whether we are cross compiling... no 2021-05-19T20:53:39.3386409Z checking for suffix of object files... o 2021-05-19T20:53:39.3593284Z checking whether we are using the GNU C compiler... yes 2021-05-19T20:53:39.3802218Z checking whether gcc accepts -g... yes 2021-05-19T20:53:39.4163555Z checking for gcc option to accept ISO C89... none needed 2021-05-19T20:53:39.4371968Z checking how to run the C preprocessor... gcc -E 2021-05-19T20:53:39.4609047Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-19T20:53:39.4626882Z checking for egrep... /usr/bin/grep -E 2021-05-19T20:53:39.5673799Z checking for ANSI C header files... yes 2021-05-19T20:53:39.5952526Z checking for sys/types.h... yes 2021-05-19T20:53:39.6274736Z checking for sys/stat.h... yes 2021-05-19T20:53:39.6597263Z checking for stdlib.h... yes 2021-05-19T20:53:39.6937069Z checking for string.h... yes 2021-05-19T20:53:39.7291461Z checking for memory.h... yes 2021-05-19T20:53:39.7648101Z checking for strings.h... yes 2021-05-19T20:53:39.8004627Z checking for inttypes.h... yes 2021-05-19T20:53:39.8358676Z checking for stdint.h... yes 2021-05-19T20:53:39.8747588Z checking for unistd.h... yes 2021-05-19T20:53:39.9130144Z checking sys/time.h usability... yes 2021-05-19T20:53:39.9218036Z checking sys/time.h presence... yes 2021-05-19T20:53:39.9218989Z checking for sys/time.h... yes 2021-05-19T20:53:39.9285366Z checking for unistd.h... (cached) yes 2021-05-19T20:53:39.9667164Z checking sys/times.h usability... yes 2021-05-19T20:53:39.9756765Z checking sys/times.h presence... yes 2021-05-19T20:53:39.9757612Z checking for sys/times.h... yes 2021-05-19T20:53:39.9821588Z checking for stdint.h... (cached) yes 2021-05-19T20:53:40.0478072Z checking size of int... 4 2021-05-19T20:53:40.1097281Z checking size of short... 2 2021-05-19T20:53:40.1725893Z checking size of long... 8 2021-05-19T20:53:40.2350735Z checking size of void*... 8 2021-05-19T20:53:40.2983784Z checking size of long long... 8 2021-05-19T20:53:40.3237574Z checking for an ANSI C-conforming const... yes 2021-05-19T20:53:40.3505613Z checking whether time.h and sys/time.h may both be included... yes 2021-05-19T20:53:40.4263061Z checking for size_t... yes 2021-05-19T20:53:40.4710327Z checking for working alloca.h... yes 2021-05-19T20:53:40.5110045Z checking for alloca... yes 2021-05-19T20:53:40.5750841Z checking for working memcmp... yes 2021-05-19T20:53:40.5921510Z configure: creating ./config.status 2021-05-19T20:53:40.6441656Z config.status: creating src/onig/config.h 2021-05-19T20:53:40.6851348Z ** libs 2021-05-19T20:53:40.6899977Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c compile.c -o compile.o 2021-05-19T20:53:40.8496877Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c escape.c -o escape.o 2021-05-19T20:53:40.9072484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c match.c -o match.o 2021-05-19T20:53:41.1296343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c print.c -o print.o 2021-05-19T20:53:41.2771195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c split.c -o split.o 2021-05-19T20:53:41.3557436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c subst.c -o subst.o 2021-05-19T20:53:41.4965116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c wcwidth.c -o wcwidth.o 2021-05-19T20:53:41.5505246Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-19T20:53:41.6106116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regcomp.c -o onig/regcomp.o 2021-05-19T20:53:42.8064871Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regenc.c -o onig/regenc.o 2021-05-19T20:53:43.0128600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regerror.c -o onig/regerror.o 2021-05-19T20:53:43.1279258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regexec.c -o onig/regexec.o 2021-05-19T20:53:44.4762186Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regext.c -o onig/regext.o 2021-05-19T20:53:44.5519741Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/reggnu.c -o onig/reggnu.o 2021-05-19T20:53:44.6087825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regparse.c -o onig/regparse.o 2021-05-19T20:53:46.2607783Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regposerr.c -o onig/regposerr.o 2021-05-19T20:53:46.3022613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regposix.c -o onig/regposix.o 2021-05-19T20:53:46.3827254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regsyntax.c -o onig/regsyntax.o 2021-05-19T20:53:46.4303291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regtrav.c -o onig/regtrav.o 2021-05-19T20:53:46.4737812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/regversion.c -o onig/regversion.o 2021-05-19T20:53:46.4971428Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/st.c -o onig/st.o 2021-05-19T20:53:46.6868805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/ascii.c -o onig/enc/ascii.o 2021-05-19T20:53:46.7048961Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/big5.c -o onig/enc/big5.o 2021-05-19T20:53:46.7614482Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/cp949.c -o onig/enc/cp949.o 2021-05-19T20:53:46.8059012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_jp.c -o onig/enc/euc_jp.o 2021-05-19T20:53:46.8950651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_kr.c -o onig/enc/euc_kr.o 2021-05-19T20:53:46.9391266Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/euc_tw.c -o onig/enc/euc_tw.o 2021-05-19T20:53:46.9856773Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/gb18030.c -o onig/enc/gb18030.o 2021-05-19T20:53:47.0855805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/gbk.c -o onig/enc/gbk.o 2021-05-19T20:53:47.1285428Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_1.c -o onig/enc/iso_8859_1.o 2021-05-19T20:53:47.1868584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_10.c -o onig/enc/iso_8859_10.o 2021-05-19T20:53:47.2367465Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_11.c -o onig/enc/iso_8859_11.o 2021-05-19T20:53:47.2620882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_13.c -o onig/enc/iso_8859_13.o 2021-05-19T20:53:47.3135123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_14.c -o onig/enc/iso_8859_14.o 2021-05-19T20:53:47.3685425Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_15.c -o onig/enc/iso_8859_15.o 2021-05-19T20:53:47.4211329Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_16.c -o onig/enc/iso_8859_16.o 2021-05-19T20:53:47.4750432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_2.c -o onig/enc/iso_8859_2.o 2021-05-19T20:53:47.5244587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_3.c -o onig/enc/iso_8859_3.o 2021-05-19T20:53:47.5770733Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_4.c -o onig/enc/iso_8859_4.o 2021-05-19T20:53:47.6268190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_5.c -o onig/enc/iso_8859_5.o 2021-05-19T20:53:47.6684981Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_6.c -o onig/enc/iso_8859_6.o 2021-05-19T20:53:47.6932663Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_7.c -o onig/enc/iso_8859_7.o 2021-05-19T20:53:47.7390938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_8.c -o onig/enc/iso_8859_8.o 2021-05-19T20:53:47.7646076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/iso_8859_9.c -o onig/enc/iso_8859_9.o 2021-05-19T20:53:47.8190484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/koi8_r.c -o onig/enc/koi8_r.o 2021-05-19T20:53:47.8511737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/koi8_u.c -o onig/enc/koi8_u.o 2021-05-19T20:53:47.8830603Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/shift_jis.c -o onig/enc/shift_jis.o 2021-05-19T20:53:47.9796432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/unicode.c -o onig/enc/unicode.o 2021-05-19T20:53:48.4640423Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/us_ascii.c -o onig/enc/us_ascii.o 2021-05-19T20:53:48.4885279Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_16be.c -o onig/enc/utf_16be.o 2021-05-19T20:53:48.5382543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_16le.c -o onig/enc/utf_16le.o 2021-05-19T20:53:48.5871480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_32be.c -o onig/enc/utf_32be.o 2021-05-19T20:53:48.6328999Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_32le.c -o onig/enc/utf_32le.o 2021-05-19T20:53:48.6776941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/utf_8.c -o onig/enc/utf_8.o 2021-05-19T20:53:48.7432467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1250.c -o onig/enc/windows_1250.o 2021-05-19T20:53:48.7916938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1251.c -o onig/enc/windows_1251.o 2021-05-19T20:53:48.8376889Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1252.c -o onig/enc/windows_1252.o 2021-05-19T20:53:48.8873806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1253.c -o onig/enc/windows_1253.o 2021-05-19T20:53:48.9349378Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1254.c -o onig/enc/windows_1254.o 2021-05-19T20:53:48.9907079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_1257.c -o onig/enc/windows_1257.o 2021-05-19T20:53:49.0437291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -I/usr/local/include -fpic -g -O2 -c onig/enc/windows_31j.c -o onig/enc/windows_31j.o 2021-05-19T20:53:49.1424637Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ore.so compile.o escape.o match.o print.o split.o subst.o wcwidth.o zzz.o onig/regcomp.o onig/regenc.o onig/regerror.o onig/regexec.o onig/regext.o onig/reggnu.o onig/regparse.o onig/regposerr.o onig/regposix.o onig/regsyntax.o onig/regtrav.o onig/regversion.o onig/st.o onig/enc/ascii.o onig/enc/big5.o onig/enc/cp949.o onig/enc/euc_jp.o onig/enc/euc_kr.o onig/enc/euc_tw.o onig/enc/gb18030.o onig/enc/gbk.o onig/enc/iso_8859_1.o onig/enc/iso_8859_10.o onig/enc/iso_8859_11.o onig/enc/iso_8859_13.o onig/enc/iso_8859_14.o onig/enc/iso_8859_15.o onig/enc/iso_8859_16.o onig/enc/iso_8859_2.o onig/enc/iso_8859_3.o onig/enc/iso_8859_4.o onig/enc/iso_8859_5.o onig/enc/iso_8859_6.o onig/enc/iso_8859_7.o onig/enc/iso_8859_8.o onig/enc/iso_8859_9.o onig/enc/koi8_r.o onig/enc/koi8_u.o onig/enc/shift_jis.o onig/enc/unicode.o onig/enc/us_ascii.o onig/enc/utf_16be.o onig/enc/utf_16le.o onig/enc/utf_32be.o onig/enc/utf_32le.o onig/enc/utf_8.o onig/enc/windows_1250.o onig/enc/windows_1251.o onig/enc/windows_1252.o onig/enc/windows_1253.o onig/enc/windows_1254.o onig/enc/windows_1257.o onig/enc/windows_31j.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:53:49.1977576Z installing to /home/runner/work/_temp/Library/00LOCK-ore/00new/ore/libs 2021-05-19T20:53:49.2003265Z ** R 2021-05-19T20:53:49.2056935Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:49.5804476Z ** help 2021-05-19T20:53:49.6131126Z *** installing help indices 2021-05-19T20:53:49.6433654Z ** building package indices 2021-05-19T20:53:49.8445613Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:50.0264145Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:53:50.0463252Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:50.2243761Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:50.2250552Z * DONE (ore) 2021-05-19T20:53:50.4541658Z * installing *source* package ‘R.methodsS3’ ... 2021-05-19T20:53:50.4557376Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-19T20:53:50.4616104Z ** using staged installation 2021-05-19T20:53:50.4704457Z ** R 2021-05-19T20:53:50.4766802Z ** inst 2021-05-19T20:53:50.4774454Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:50.9400061Z ** help 2021-05-19T20:53:50.9778713Z *** installing help indices 2021-05-19T20:53:51.0124590Z ** building package indices 2021-05-19T20:53:51.2174577Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:51.3953368Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:51.5768010Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:51.5776418Z * DONE (R.methodsS3) 2021-05-19T20:53:51.7769036Z * installing *source* package ‘bitops’ ... 2021-05-19T20:53:51.7778753Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-19T20:53:51.7808448Z ** using staged installation 2021-05-19T20:53:51.7898768Z ** libs 2021-05-19T20:53:51.7945434Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-19T20:53:51.9703529Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-19T20:53:52.0277667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:53:52.0723333Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:53:52.0897706Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-19T20:53:52.0898840Z ** R 2021-05-19T20:53:52.0920028Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:53:52.3107764Z ** help 2021-05-19T20:53:52.3353732Z *** installing help indices 2021-05-19T20:53:52.3529967Z ** building package indices 2021-05-19T20:53:52.5418888Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:53:52.7169102Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:53:52.7346751Z ** testing if installed package can be loaded from final location 2021-05-19T20:53:52.9037369Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:53:52.9042950Z * DONE (bitops) 2021-05-19T20:53:53.3267773Z * installing *source* package ‘matrixStats’ ... 2021-05-19T20:53:53.3364027Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-19T20:53:53.3394363Z ** using staged installation 2021-05-19T20:53:53.3546364Z ** libs 2021-05-19T20:53:53.3608280Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-19T20:53:53.4006612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-19T20:53:53.4796607Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-19T20:53:53.5803892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-19T20:53:53.6720031Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-19T20:53:53.8019759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-19T20:53:55.0610834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-19T20:53:55.4054201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-19T20:53:56.7946934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-19T20:53:56.9970964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-19T20:53:57.0592745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-19T20:53:57.2529177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-19T20:53:57.3904323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-19T20:53:57.5334040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-19T20:53:57.5980052Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-19T20:53:58.9429086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-19T20:53:59.9286401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-19T20:54:00.9060249Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-19T20:54:01.7348267Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-19T20:54:02.5631570Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-19T20:54:04.4801267Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-19T20:54:04.6096119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-19T20:54:05.5464091Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-19T20:54:06.0413021Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-19T20:54:06.8950800Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-19T20:54:07.2883045Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-19T20:54:08.7565225Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-19T20:54:18.9764400Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-19T20:54:19.5141173Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-19T20:54:20.0814419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-19T20:54:20.2067916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-19T20:54:20.3163285Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-19T20:54:20.5506494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-19T20:54:20.7134705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-19T20:54:21.1138378Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-19T20:55:11.9899250Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:55:12.0698508Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-19T20:55:12.0814951Z ** R 2021-05-19T20:55:12.1002337Z ** inst 2021-05-19T20:55:12.1044307Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:13.3166705Z ** help 2021-05-19T20:55:13.4501633Z *** installing help indices 2021-05-19T20:55:13.5371440Z ** building package indices 2021-05-19T20:55:13.7750530Z ** installing vignettes 2021-05-19T20:55:13.7817114Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:13.9632536Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:55:13.9856906Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:14.1778528Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:14.1800998Z * DONE (matrixStats) 2021-05-19T20:55:14.4020219Z * installing *source* package ‘abind’ ... 2021-05-19T20:55:14.4032580Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:14.4063158Z ** using staged installation 2021-05-19T20:55:14.4169810Z ** R 2021-05-19T20:55:14.4214550Z ** inst 2021-05-19T20:55:14.4278895Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:14.9629609Z ** help 2021-05-19T20:55:14.9894797Z *** installing help indices 2021-05-19T20:55:15.0122508Z ** building package indices 2021-05-19T20:55:15.2078711Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:15.3653430Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:15.5303611Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:15.5312852Z * DONE (abind) 2021-05-19T20:55:15.7258724Z * installing *source* package ‘tinytex’ ... 2021-05-19T20:55:15.7271448Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:15.7301862Z ** using staged installation 2021-05-19T20:55:15.7510382Z ** R 2021-05-19T20:55:15.7579083Z ** inst 2021-05-19T20:55:15.7586774Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:16.3857899Z ** help 2021-05-19T20:55:16.4177640Z *** installing help indices 2021-05-19T20:55:16.4448340Z ** building package indices 2021-05-19T20:55:16.6334796Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:16.8165523Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:16.9900971Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:16.9909535Z * DONE (tinytex) 2021-05-19T20:55:17.2050784Z * installing *source* package ‘shades’ ... 2021-05-19T20:55:17.2066908Z ** package ‘shades’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:17.2097770Z ** using staged installation 2021-05-19T20:55:17.2199741Z ** R 2021-05-19T20:55:17.2258926Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:17.7376383Z ** help 2021-05-19T20:55:17.7669935Z *** installing help indices 2021-05-19T20:55:17.7979634Z ** building package indices 2021-05-19T20:55:17.9825582Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:18.1677191Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:18.3452900Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:18.3454167Z * DONE (shades) 2021-05-19T20:55:18.6745896Z * installing *source* package ‘R.oo’ ... 2021-05-19T20:55:18.6809453Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:18.6849251Z ** using staged installation 2021-05-19T20:55:18.6987427Z ** R 2021-05-19T20:55:18.7297966Z ** inst 2021-05-19T20:55:18.7312116Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:21.2530418Z ** help 2021-05-19T20:55:21.6833234Z *** installing help indices 2021-05-19T20:55:22.0127341Z ** building package indices 2021-05-19T20:55:22.4878455Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:22.6756205Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:22.9596930Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:22.9640564Z * DONE (R.oo) 2021-05-19T20:55:23.1955670Z * installing *source* package ‘htmltools’ ... 2021-05-19T20:55:23.1976035Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:23.2005783Z ** using staged installation 2021-05-19T20:55:23.2171642Z ** libs 2021-05-19T20:55:23.2215879Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-19T20:55:23.2619717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-19T20:55:23.3650630Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-19T20:55:23.3898296Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-19T20:55:23.3899767Z ** R 2021-05-19T20:55:23.4005368Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:24.8015934Z ** help 2021-05-19T20:55:24.8805037Z *** installing help indices 2021-05-19T20:55:24.9420434Z ** building package indices 2021-05-19T20:55:25.1833819Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:25.3887202Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-19T20:55:25.4064267Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:25.6299857Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:25.6316061Z * DONE (htmltools) 2021-05-19T20:55:25.8347477Z * installing *source* package ‘reportr’ ... 2021-05-19T20:55:25.8356432Z ** package ‘reportr’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:25.8387052Z ** using staged installation 2021-05-19T20:55:25.8502347Z ** R 2021-05-19T20:55:25.8538643Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:26.1813875Z ** help 2021-05-19T20:55:26.1961259Z *** installing help indices 2021-05-19T20:55:26.2181987Z ** building package indices 2021-05-19T20:55:26.4067003Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:26.5857544Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:26.7648076Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:26.7654336Z * DONE (reportr) 2021-05-19T20:55:27.2865199Z * installing *source* package ‘R.utils’ ... 2021-05-19T20:55:27.2993575Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:27.3024737Z ** using staged installation 2021-05-19T20:55:27.3165692Z ** R 2021-05-19T20:55:27.3836494Z ** inst 2021-05-19T20:55:27.3848658Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:33.3341454Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-19T20:55:33.3347242Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-19T20:55:33.3349179Z ** help 2021-05-19T20:55:34.1863123Z *** installing help indices 2021-05-19T20:55:34.6561490Z ** building package indices 2021-05-19T20:55:35.3823647Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:35.6244339Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:36.0160441Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:36.0237811Z * DONE (R.utils) 2021-05-19T20:55:36.8046162Z * installing *source* package ‘rmarkdown’ ... 2021-05-19T20:55:36.8324389Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-19T20:55:36.8355995Z ** using staged installation 2021-05-19T20:55:36.8634510Z ** R 2021-05-19T20:55:36.9004281Z ** inst 2021-05-19T20:55:36.9223774Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:55:40.2460174Z ** help 2021-05-19T20:55:40.4374120Z *** installing help indices 2021-05-19T20:55:40.5953497Z *** copying figures 2021-05-19T20:55:40.5955213Z ** building package indices 2021-05-19T20:55:40.8847853Z ** installing vignettes 2021-05-19T20:55:40.8921179Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:55:41.1336198Z ** testing if installed package can be loaded from final location 2021-05-19T20:55:41.4346050Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:55:41.4401973Z * DONE (rmarkdown) 2021-05-19T20:55:41.4601186Z 2021-05-19T20:55:41.4602197Z The downloaded source packages are in 2021-05-19T20:55:41.4603509Z ‘/tmp/RtmpbwIEqN/downloaded_packages’ 2021-05-19T20:55:41.8131834Z Downloading GitHub repo jonclayden/tractor@HEAD 2021-05-19T20:55:45.5601502Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/reportr.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/reportr 2021-05-19T20:55:45.5627712Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/reportr'... 2021-05-19T20:55:45.8071407Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/mmand.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/mmand 2021-05-19T20:55:45.8092804Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/mmand'... 2021-05-19T20:55:46.3472197Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNiftyReg.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg 2021-05-19T20:55:46.3490309Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RNiftyReg'... 2021-05-19T20:55:46.8751926Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/corpcor.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/corpcor 2021-05-19T20:55:46.8773576Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/corpcor'... 2021-05-19T20:55:47.1620900Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/Rcpp.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp 2021-05-19T20:55:47.1642460Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/Rcpp'... 2021-05-19T20:55:47.7562950Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/ore.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/ore 2021-05-19T20:55:47.7583294Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/ore'... 2021-05-19T20:55:48.1128221Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/RcppEigen.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen 2021-05-19T20:55:48.1145531Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RcppEigen'... 2021-05-19T20:55:48.8535032Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/RNifti.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RNifti 2021-05-19T20:55:48.8563521Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/RNifti'... 2021-05-19T20:55:49.2397211Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/divest.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/divest 2021-05-19T20:55:49.2414077Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/divest'... 2021-05-19T20:55:49.5966935Z Submodule 'dcm_qa' (https://github.com/neurolabusc/dcm_qa.git) registered for path 'tests/dcm_qa' 2021-05-19T20:55:49.5968970Z Submodule 'dcm_qa_nih' (https://github.com/neurolabusc/dcm_qa_nih.git) registered for path 'tests/dcm_qa_nih' 2021-05-19T20:55:49.5972882Z Submodule 'tests/dcm_qa_stc' (https://github.com/neurolabusc/dcm_qa_stc.git) registered for path 'tests/dcm_qa_stc' 2021-05-19T20:55:49.5974774Z Submodule 'tests/testthat/dcm_qa_uih' (https://github.com/neurolabusc/dcm_qa_uih.git) registered for path 'tests/dcm_qa_uih' 2021-05-19T20:55:49.6019440Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa'... 2021-05-19T20:55:52.0711248Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_nih'... 2021-05-19T20:55:52.5530453Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_stc'... 2021-05-19T20:55:56.0534165Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/lib/divest/tests/dcm_qa_uih'... 2021-05-19T20:56:05.3617291Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/yaml.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/yaml 2021-05-19T20:56:05.3635646Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/yaml'... 2021-05-19T20:56:05.8184019Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/loder.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/loder 2021-05-19T20:56:05.8206599Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/loder'... 2021-05-19T20:56:06.1220254Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/jonclayden/shades.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/shades 2021-05-19T20:56:06.1243005Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/shades'... 2021-05-19T20:56:06.4194693Z '/usr/bin/git' clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/tractor/jsonlite.git /tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite 2021-05-19T20:56:06.4211679Z Cloning into '/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/../lib/jsonlite'... 2021-05-19T20:56:07.2604573Z 2021-05-19T20:56:07.4459745Z 2021-05-19T20:56:07.4475532Z checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ ... 2021-05-19T20:56:07.4493847Z 2021-05-19T20:56:07.4495845Z ✔ checking for file ‘/tmp/RtmpbwIEqN/remotesd1aa5bc1e69e/tractor-tractor-6f92c97/tractor.base/DESCRIPTION’ 2021-05-19T20:56:07.4613082Z 2021-05-19T20:56:07.4614047Z 2021-05-19T20:56:07.4616189Z ─ preparing ‘tractor.base’: 2021-05-19T20:56:07.4619116Z 2021-05-19T20:56:07.4619574Z 2021-05-19T20:56:07.4669728Z checking DESCRIPTION meta-information ... 2021-05-19T20:56:07.4670238Z 2021-05-19T20:56:07.4670910Z ✔ checking DESCRIPTION meta-information 2021-05-19T20:56:07.5138766Z 2021-05-19T20:56:07.5139344Z 2021-05-19T20:56:07.5140619Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:56:07.5141074Z 2021-05-19T20:56:07.5152627Z 2021-05-19T20:56:07.5154939Z ─ checking for empty or unneeded directories 2021-05-19T20:56:07.5185121Z 2021-05-19T20:56:07.5187647Z 2021-05-19T20:56:07.5189789Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:56:07.5252402Z 2021-05-19T20:56:07.5272735Z 2021-05-19T20:56:07.5275700Z ─ building ‘tractor.base_3.3.4.tar.gz’ 2021-05-19T20:56:07.7616028Z 2021-05-19T20:56:07.7619124Z 2021-05-19T20:56:07.7620920Z 2021-05-19T20:56:07.7725811Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-19T20:56:07.7726897Z (as ‘lib’ is unspecified) 2021-05-19T20:56:08.0988116Z * installing *source* package ‘tractor.base’ ... 2021-05-19T20:56:08.0991793Z ** using staged installation 2021-05-19T20:56:08.1128080Z ** R 2021-05-19T20:56:08.1369767Z ** inst 2021-05-19T20:56:08.1408520Z ** byte-compile and prepare package for lazy loading 2021-05-19T20:56:11.7492597Z 2021-05-19T20:56:11.7494597Z in method for ‘coerce’ with signature ‘"MriImage","nifti"’: no definition for class “nifti” 2021-05-19T20:56:11.7496012Z in method for ‘coerce’ with signature ‘"nifti","MriImage"’: no definition for class “nifti” 2021-05-19T20:56:11.7497841Z ** help 2021-05-19T20:56:11.8456798Z *** installing help indices 2021-05-19T20:56:11.9156274Z ** building package indices 2021-05-19T20:56:12.1583604Z ** testing if installed package can be loaded from temporary location 2021-05-19T20:56:12.4981279Z ** testing if installed package can be loaded from final location 2021-05-19T20:56:12.9082671Z ** testing if installed package keeps a record of temporary installation path 2021-05-19T20:56:12.9131692Z * DONE (tractor.base) 2021-05-19T20:56:13.0155356Z Skipping install of 'dcm2niir' from a github remote, the SHA1 (cd9c14f5) has not changed since last install. 2021-05-19T20:56:13.0156773Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.1059904Z Skipping install of 'dcmtk' from a github remote, the SHA1 (491cbcea) has not changed since last install. 2021-05-19T20:56:13.1061027Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.1881476Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-19T20:56:13.1882489Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.2681985Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-19T20:56:13.2683035Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.3549788Z Skipping install of 'fslr' from a github remote, the SHA1 (2836c318) has not changed since last install. 2021-05-19T20:56:13.3550760Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.3572889Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-19T20:56:13.3573768Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.3590277Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-19T20:56:13.3591092Z Use `force = TRUE` to force installation 2021-05-19T20:56:13.7991359Z ##[group]Run options(width = 100) 2021-05-19T20:56:13.7991859Z options(width = 100) 2021-05-19T20:56:13.7992358Z pkgs <- installed.packages()[, "Package"] 2021-05-19T20:56:13.7992991Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-19T20:56:13.7999804Z shell: /usr/local/bin/Rscript {0} 2021-05-19T20:56:13.8000197Z env: 2021-05-19T20:56:13.8000598Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:56:13.8001037Z TIC_DEPLOY_KEY: 2021-05-19T20:56:13.8001787Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:56:13.8003342Z GITHUB_PAT: *** 2021-05-19T20:56:13.8004162Z COVERALLS_TOKEN: *** 2021-05-19T20:56:13.8004623Z continue-on-error: true 2021-05-19T20:56:13.8005060Z VDIFFR_RUN_TESTS: 2021-05-19T20:56:13.8005514Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:56:13.8005917Z TZ: UTC 2021-05-19T20:56:13.8006274Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:56:13.8006690Z NOT_CRAN: true 2021-05-19T20:56:13.8007047Z ##[endgroup] 2021-05-19T20:56:14.2613016Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-19T20:56:14.2613736Z setting value 2021-05-19T20:56:14.2614662Z version R Under development (unstable) (2021-05-17 r80314) 2021-05-19T20:56:14.2615364Z os Ubuntu 20.04.2 LTS 2021-05-19T20:56:14.2616463Z system x86_64, linux-gnu 2021-05-19T20:56:14.2617053Z ui X11 2021-05-19T20:56:14.2617630Z language (EN) 2021-05-19T20:56:14.2618740Z collate C.UTF-8 2021-05-19T20:56:14.2619504Z ctype C.UTF-8 2021-05-19T20:56:14.2620083Z tz UTC 2021-05-19T20:56:14.2620820Z date 2021-05-19 2021-05-19T20:56:14.2621109Z 2021-05-19T20:56:14.2622011Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-19T20:56:14.2622772Z package * version date lib source 2021-05-19T20:56:14.2623693Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2624663Z aghast 0.2.1 2021-05-19 [1] Github (muschellij2/aghast@0c3b853) 2021-05-19T20:56:14.2625628Z askpass 1.1 2019-01-13 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2626479Z base * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2627378Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2628270Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2629129Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2629983Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2630840Z brio 1.1.2 2021-04-23 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2631687Z cachem 1.0.5 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2632550Z callr 3.7.0 2021-04-20 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2633395Z class 7.3-19 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2634243Z cli 2.5.0 2021-04-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2635101Z clipr 0.7.1 2020-10-08 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2635994Z cluster 2.1.2 2021-04-17 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2637077Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2638016Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2638897Z compiler 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2639768Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2640626Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2641473Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2642381Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2643282Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2644134Z datasets * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2645153Z dcm2niir 0.6.9.1 2021-05-19 [1] Github (neuroconductor/dcm2niir@cd9c14f) 2021-05-19T20:56:14.2646242Z dcmtk 0.6.8.1 2021-05-19 [1] Github (neuroconductor/dcmtk@491cbce) 2021-05-19T20:56:14.2647206Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2648161Z desc 1.2.0.9000 2021-05-19 [1] Github (muschellij2/desc@7be86f2) 2021-05-19T20:56:14.2649106Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2649993Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2650868Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2651810Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2652687Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2653594Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2654463Z fansi 0.4.2 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2655326Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2656392Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2657236Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2658174Z fslr 2.25.0 2021-05-19 [1] Github (neuroconductor/fslr@2836c31) 2021-05-19T20:56:14.2659143Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2660019Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2660871Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2661842Z ghtravis 0.15.1 2021-05-19 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-19T20:56:14.2662804Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2663686Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2664552Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2665418Z graphics * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2666309Z grDevices * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2667166Z grid 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2668027Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2668910Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2669873Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2670741Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2671594Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2672494Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2673380Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2674231Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2675118Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2676018Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2676913Z lubridate 1.7.10 2021-02-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2677810Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2678697Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2679547Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2680406Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2681297Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2682183Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2683053Z methods * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2684011Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2684844Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2685860Z neurobase 1.30.1 2021-05-19 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-19T20:56:14.2686864Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2687703Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2688573Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2689464Z ore 1.6.3 2019-11-02 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2690324Z oro.nifti 0.10.3 2021-05-19 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-19T20:56:14.2691200Z parallel 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2691950Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2692714Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2693500Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2694264Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2695023Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2704869Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2705745Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2706523Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2707278Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2708050Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2708848Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2709759Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2710504Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2711259Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2712051Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2712809Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2713576Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2715425Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2716205Z reportr 1.3.0 2018-10-26 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2716972Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2717709Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2718473Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2719335Z RNifti 1.3.1 2021-05-19 [1] Github (neuroconductor/RNifti@929106d) 2021-05-19T20:56:14.2720171Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2720939Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2721701Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2722476Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2723255Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2724162Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2724944Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2725729Z shades 1.4.0 2019-08-02 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2726492Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2727237Z splines 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2727982Z stats * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2728726Z stats4 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2729460Z stringi 1.6.2 2021-05-17 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2730220Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2730975Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-19T20:56:14.2731729Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2732522Z sysreqs 1.0.0.9000 2021-05-19 [1] Github (r-hub/sysreqs@f068afa) 2021-05-19T20:56:14.2733301Z tcltk 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2734061Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2734831Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2735815Z tic 0.10.0 2021-05-19 [1] Github (ropensci/tic@3b4dfb8) 2021-05-19T20:56:14.2736648Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2737424Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2738191Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2739041Z tools 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2739903Z tractor.base 3.3.4 2021-05-19 [1] Github (jonclayden/tractor@6f92c97) 2021-05-19T20:56:14.2740756Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2741503Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2742236Z utils * 4.2.0 2021-05-18 [2] local 2021-05-19T20:56:14.2742956Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2743704Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2744444Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2745197Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2745937Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2746661Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2747403Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2748153Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2748876Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-19T20:56:14.2749163Z 2021-05-19T20:56:14.2749597Z [1] /home/runner/work/_temp/Library 2021-05-19T20:56:14.2752944Z [2] /opt/R/devel/lib/R/library 2021-05-19T20:56:14.2783490Z ##[group]Run Rscript -e 'tic::script()' 2021-05-19T20:56:14.2784019Z Rscript -e 'tic::script()' 2021-05-19T20:56:14.2784530Z ls -l check 2021-05-19T20:56:14.2852239Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-19T20:56:14.2852726Z env: 2021-05-19T20:56:14.2853129Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:56:14.2853565Z TIC_DEPLOY_KEY: 2021-05-19T20:56:14.2854300Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:56:14.2856260Z GITHUB_PAT: *** 2021-05-19T20:56:14.2857010Z COVERALLS_TOKEN: *** 2021-05-19T20:56:14.2857467Z continue-on-error: true 2021-05-19T20:56:14.2857917Z VDIFFR_RUN_TESTS: 2021-05-19T20:56:14.2858365Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:56:14.2858777Z TZ: UTC 2021-05-19T20:56:14.2859125Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:56:14.2859509Z NOT_CRAN: true 2021-05-19T20:56:14.2859848Z ##[endgroup] 2021-05-19T20:56:14.5469256Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:56:14.6766392Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-19T20:56:14.6767461Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-19T20:56:14.6768192Z timeout = Inf, check_dir = "check") 2021-05-19T20:56:14.7391822Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-19T20:56:14.9502892Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-19T20:56:14.9717706Z * preparing ‘dcmsort’: 2021-05-19T20:56:14.9810339Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:56:15.0665835Z * installing the package to build vignettes 2021-05-19T20:56:20.5386706Z * creating vignettes ... OK 2021-05-19T20:56:20.5642135Z * checking for LF line-endings in source and make files and shell scripts 2021-05-19T20:56:20.5649595Z * checking for empty or unneeded directories 2021-05-19T20:56:20.5660745Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-19T20:56:20.5757817Z * building ‘dcmsort_0.3.0.tar.gz’ 2021-05-19T20:56:20.5874923Z 2021-05-19T20:56:20.7185662Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-19T20:56:20.9250816Z * using log directory ‘/home/runner/work/dcmsort/dcmsort/check/dcmsort.Rcheck’ 2021-05-19T20:56:20.9253570Z * using R Under development (unstable) (2021-05-17 r80314) 2021-05-19T20:56:20.9254783Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-19T20:56:20.9255974Z * using session charset: UTF-8 2021-05-19T20:56:20.9466118Z * using option ‘--as-cran’ 2021-05-19T20:56:20.9554621Z * checking for file ‘dcmsort/DESCRIPTION’ ... OK 2021-05-19T20:56:20.9563456Z * checking extension type ... Package 2021-05-19T20:56:20.9564715Z * this is package ‘dcmsort’ version ‘0.3.0’ 2021-05-19T20:56:20.9565615Z * package encoding: UTF-8 2021-05-19T20:56:20.9587741Z * checking package namespace information ... OK 2021-05-19T20:56:35.5737170Z * checking package dependencies ... OK 2021-05-19T20:56:35.5751787Z * checking if this is a source package ... OK 2021-05-19T20:56:35.5752808Z * checking if there is a namespace ... OK 2021-05-19T20:56:35.6578876Z * checking for executable files ... OK 2021-05-19T20:56:35.6586159Z * checking for hidden files and directories ... OK 2021-05-19T20:56:35.6587368Z * checking for portable file names ... OK 2021-05-19T20:56:35.6589381Z * checking for sufficient/correct file permissions ... OK 2021-05-19T20:56:35.6616114Z * checking serialization versions ... OK 2021-05-19T20:56:40.3437676Z * checking whether package ‘dcmsort’ can be installed ... OK 2021-05-19T20:56:40.3487943Z * checking installed package size ... OK 2021-05-19T20:56:40.4257392Z * checking package directory ... OK 2021-05-19T20:56:40.4273628Z * checking for future file timestamps ... OK 2021-05-19T20:56:40.4275084Z * checking ‘build’ directory ... OK 2021-05-19T20:56:40.5859836Z * checking DESCRIPTION meta-information ... OK 2021-05-19T20:56:40.5861756Z * checking top-level files ... OK 2021-05-19T20:56:40.5863298Z * checking for left-over files ... OK 2021-05-19T20:56:40.7520309Z * checking index information ... OK 2021-05-19T20:56:40.8990140Z * checking package subdirectories ... OK 2021-05-19T20:56:40.9409383Z * checking R files for non-ASCII characters ... OK 2021-05-19T20:56:40.9849118Z * checking R files for syntax errors ... OK 2021-05-19T20:56:42.1741748Z * checking whether the package can be loaded ... OK 2021-05-19T20:56:43.2815584Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-19T20:56:44.3945540Z * checking whether the package can be unloaded cleanly ... OK 2021-05-19T20:56:45.5954441Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-19T20:56:46.8766457Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-19T20:56:48.1036795Z * checking loading without being on the library search path ... OK 2021-05-19T20:56:49.3400851Z * checking dependencies in R code ... OK 2021-05-19T20:56:51.2497305Z * checking S3 generic/method consistency ... OK 2021-05-19T20:56:52.4845224Z * checking replacement functions ... OK 2021-05-19T20:56:53.7497151Z * checking foreign function calls ... OK 2021-05-19T20:57:00.5514372Z * checking R code for possible problems ... OK 2021-05-19T20:57:00.7416996Z * checking Rd files ... OK 2021-05-19T20:57:00.7888334Z * checking Rd metadata ... OK 2021-05-19T20:57:00.8482107Z * checking Rd line widths ... OK 2021-05-19T20:57:00.9546702Z * checking Rd cross-references ... OK 2021-05-19T20:57:02.1762805Z * checking for missing documentation entries ... OK 2021-05-19T20:57:05.8447904Z * checking for code/documentation mismatches ... OK 2021-05-19T20:57:07.8661741Z * checking Rd \usage sections ... OK 2021-05-19T20:57:07.9369444Z * checking Rd contents ... OK 2021-05-19T20:57:08.0136986Z * checking for unstated dependencies in examples ... OK 2021-05-19T20:57:08.0176459Z * checking installed files from ‘inst/doc’ ... OK 2021-05-19T20:57:08.0210899Z * checking files in ‘vignettes’ ... OK 2021-05-19T20:57:09.7533235Z * checking examples ... OK 2021-05-19T20:57:09.8169289Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-19T20:57:09.9764328Z * checking tests ... 2021-05-19T20:57:11.5612609Z Running ‘testthat.R’ 2021-05-19T20:57:11.5656398Z OK 2021-05-19T20:57:11.7312872Z * checking for unstated dependencies in vignettes ... OK 2021-05-19T20:57:11.7629133Z * checking package vignettes in ‘inst/doc’ ... NOTE 2021-05-19T20:57:11.7630707Z Package vignette with placeholder title ‘Vignette Title’: 2021-05-19T20:57:11.7631794Z ‘bad-vignette.Rmd’ 2021-05-19T20:57:12.4342291Z * checking re-building of vignette outputs ... OK 2021-05-19T20:57:14.0699720Z * checking PDF version of manual ... OK 2021-05-19T20:57:14.0701503Z * checking for non-standard things in the check directory ... OK 2021-05-19T20:57:14.0702458Z * checking for detritus in the temp directory ... OK 2021-05-19T20:57:14.0703128Z * DONE 2021-05-19T20:57:14.0711960Z 2021-05-19T20:57:14.0712737Z Status: 1 NOTE 2021-05-19T20:57:14.0713304Z See 2021-05-19T20:57:14.0714511Z ‘/home/runner/work/dcmsort/dcmsort/check/dcmsort.Rcheck/00check.log’ 2021-05-19T20:57:14.0715289Z for details. 2021-05-19T20:57:14.0715921Z 2021-05-19T20:57:14.0716294Z 2021-05-19T20:57:14.1571639Z ── R CMD check results ────────────────────────────────────── dcmsort 0.3.0 ──── 2021-05-19T20:57:14.1592543Z Duration: 53.6s 2021-05-19T20:57:14.1594147Z 2021-05-19T20:57:14.1619660Z ❯ checking package vignettes in ‘inst/doc’ ... NOTE 2021-05-19T20:57:14.1621908Z Package vignette with placeholder title ‘Vignette Title’: 2021-05-19T20:57:14.1622678Z ‘bad-vignette.Rmd’ 2021-05-19T20:57:14.1622982Z 2021-05-19T20:57:14.1635113Z 0 errors ✔ | 0 warnings ✔ | 1 note ✖ 2021-05-19T20:57:14.1729566Z total 80 2021-05-19T20:57:14.1730901Z drwxr-xr-x 6 runner docker 4096 May 19 20:57 dcmsort.Rcheck 2021-05-19T20:57:14.1733265Z -rw-r--r-- 1 runner docker 23367 May 19 20:56 dcmsort_0.3.0.tar.gz 2021-05-19T20:57:14.1734578Z -rw-r--r-- 1 runner docker 51758 May 19 20:56 dcmsort_0.3.0_R_x86_64-pc-linux-gnu.tar.gz 2021-05-19T20:57:14.1764837Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-19T20:57:14.1765561Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-19T20:57:14.1808341Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-19T20:57:14.1808826Z env: 2021-05-19T20:57:14.1809224Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:57:14.1809664Z TIC_DEPLOY_KEY: 2021-05-19T20:57:14.1810398Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:57:14.1811957Z GITHUB_PAT: *** 2021-05-19T20:57:14.1812694Z COVERALLS_TOKEN: *** 2021-05-19T20:57:14.1813153Z continue-on-error: true 2021-05-19T20:57:14.1813579Z VDIFFR_RUN_TESTS: 2021-05-19T20:57:14.1814036Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:57:14.1814439Z TZ: UTC 2021-05-19T20:57:14.1814796Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:57:14.1815182Z NOT_CRAN: true 2021-05-19T20:57:14.1815711Z ##[endgroup] 2021-05-19T20:57:14.1918953Z 2021-05-19T20:57:14.1920325Z R Under development (unstable) (2021-05-17 r80314) -- "Unsuffered Consequences" 2021-05-19T20:57:14.1921437Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-19T20:57:14.1922446Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-19T20:57:14.1922979Z 2021-05-19T20:57:14.1923846Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-19T20:57:14.1925429Z You are welcome to redistribute it under certain conditions. 2021-05-19T20:57:14.1927376Z Type 'license()' or 'licence()' for distribution details. 2021-05-19T20:57:14.1927850Z 2021-05-19T20:57:14.1928494Z R is a collaborative project with many contributors. 2021-05-19T20:57:14.1929480Z Type 'contributors()' for more information and 2021-05-19T20:57:14.1930465Z 'citation()' on how to cite R or R packages in publications. 2021-05-19T20:57:14.1930915Z 2021-05-19T20:57:14.1931683Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-19T20:57:14.1932625Z 'help.start()' for an HTML browser interface to help. 2021-05-19T20:57:14.1933357Z Type 'q()' to quit R. 2021-05-19T20:57:14.1933653Z 2021-05-19T20:57:14.1934061Z > library(testthat) 2021-05-19T20:57:14.1934541Z > library(dcmsort) 2021-05-19T20:57:14.1934912Z > 2021-05-19T20:57:14.1935340Z > test_check("dcmsort") 2021-05-19T20:57:14.1936775Z [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] 2021-05-19T20:57:14.1937180Z > 2021-05-19T20:57:14.1937571Z > proc.time() 2021-05-19T20:57:14.1938049Z user system elapsed 2021-05-19T20:57:14.1938518Z 1.490 0.071 1.551 2021-05-19T20:57:14.1967513Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-19T20:57:14.1968056Z Rscript -e "tic::before_deploy()" 2021-05-19T20:57:14.2007636Z shell: /usr/bin/bash -e {0} 2021-05-19T20:57:14.2008004Z env: 2021-05-19T20:57:14.2008403Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:57:14.2008863Z TIC_DEPLOY_KEY: 2021-05-19T20:57:14.2009587Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:57:14.2010783Z GITHUB_PAT: *** 2021-05-19T20:57:14.2011519Z COVERALLS_TOKEN: *** 2021-05-19T20:57:14.2012065Z continue-on-error: true 2021-05-19T20:57:14.2012502Z VDIFFR_RUN_TESTS: 2021-05-19T20:57:14.2012946Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:57:14.2013340Z TZ: UTC 2021-05-19T20:57:14.2013698Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:57:14.2014068Z NOT_CRAN: true 2021-05-19T20:57:14.2014418Z ##[endgroup] 2021-05-19T20:57:14.4576121Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:57:14.5764919Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-19T20:57:14.5765449Z with: 2021-05-19T20:57:14.5766202Z upload_url: https://uploads.github.com/repos/neuroconductor/dcmsort/releases/43244738/assets{?name,label} 2021-05-19T20:57:14.5767136Z asset_path: check/dcmsort_0.3.0_R_x86_64-pc-linux-gnu.tar.gz 2021-05-19T20:57:14.5767772Z asset_name: dcmsort_0.3.0_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-19T20:57:14.5768368Z asset_content_type: application/octet-stream 2021-05-19T20:57:14.5768829Z env: 2021-05-19T20:57:14.5769219Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:57:14.5769665Z TIC_DEPLOY_KEY: 2021-05-19T20:57:14.5770389Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:57:14.5771562Z GITHUB_PAT: *** 2021-05-19T20:57:14.5772308Z COVERALLS_TOKEN: *** 2021-05-19T20:57:14.5772764Z continue-on-error: true 2021-05-19T20:57:14.5773191Z VDIFFR_RUN_TESTS: 2021-05-19T20:57:14.5773646Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:57:14.5774057Z TZ: UTC 2021-05-19T20:57:14.5774415Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:57:14.5774783Z NOT_CRAN: true 2021-05-19T20:57:14.5775646Z GITHUB_TOKEN: *** 2021-05-19T20:57:14.5776006Z ##[endgroup] 2021-05-19T20:57:15.1130301Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-19T20:57:15.1130896Z Rscript -e "tic::deploy()" 2021-05-19T20:57:15.1178411Z shell: /usr/bin/bash -e {0} 2021-05-19T20:57:15.1178827Z env: 2021-05-19T20:57:15.1179300Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:57:15.1179796Z TIC_DEPLOY_KEY: 2021-05-19T20:57:15.1180656Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:57:15.1182405Z GITHUB_PAT: *** 2021-05-19T20:57:15.1183535Z COVERALLS_TOKEN: *** 2021-05-19T20:57:15.1184003Z continue-on-error: true 2021-05-19T20:57:15.1184447Z VDIFFR_RUN_TESTS: 2021-05-19T20:57:15.1184886Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:57:15.1185306Z TZ: UTC 2021-05-19T20:57:15.1185659Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:57:15.1186047Z NOT_CRAN: true 2021-05-19T20:57:15.1186401Z ##[endgroup] 2021-05-19T20:57:15.3748441Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:57:15.4919974Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-19T20:57:15.4920568Z Rscript -e "tic::after_deploy()" 2021-05-19T20:57:15.4964723Z shell: /usr/bin/bash -e {0} 2021-05-19T20:57:15.4965087Z env: 2021-05-19T20:57:15.4965504Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-19T20:57:15.4965939Z TIC_DEPLOY_KEY: 2021-05-19T20:57:15.4966676Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-19T20:57:15.4968095Z GITHUB_PAT: *** 2021-05-19T20:57:15.4968869Z COVERALLS_TOKEN: *** 2021-05-19T20:57:15.4969313Z continue-on-error: true 2021-05-19T20:57:15.4969746Z VDIFFR_RUN_TESTS: 2021-05-19T20:57:15.4970180Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-19T20:57:15.4970592Z TZ: UTC 2021-05-19T20:57:15.4970949Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-19T20:57:15.4971324Z NOT_CRAN: true 2021-05-19T20:57:15.4971675Z ##[endgroup] 2021-05-19T20:57:15.7540577Z ✔ Loading tic stage configuration from tic.R 2021-05-19T20:57:16.0280541Z Post job cleanup. 2021-05-19T20:57:16.0703530Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-19T20:57:16.0806067Z Post job cleanup. 2021-05-19T20:57:16.1750658Z [command]/usr/bin/git version 2021-05-19T20:57:16.1804444Z git version 2.31.1 2021-05-19T20:57:16.1835800Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-19T20:57:16.1877614Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-19T20:57:16.2102612Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-19T20:57:16.2134876Z http.https://github.com/.extraheader 2021-05-19T20:57:16.2142332Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-19T20:57:16.2182996Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-19T20:57:16.2486429Z Cleaning up orphan processes